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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028571 ID=TCONS_00028571|Name=TCONS_00028571|organism=Clytia hemisphaerica|type=transcript|length=1270bp
ATACCCCTTATATTCTTACGTCTGGCTCACATCacacaaaagaaagaaag
gaagATCACCAAAGTTCTTACAGAAATTTTCTGGTCCACATCAAATAATT
GAGCTTATTCCGCCAGTCAATTATAGATTAAAGACACCAAACGGATCTGT
GCTGAAAAGTCCTGTTCATCATGACCGTCTAAAAAAACACGTTGGCGAAG
CTCCAGAACCAACGCTAACAGAAGCGCTGAAACCGATAGAGGAAGAAACG
TGGGAGGAAGAGGATGATATATCATTAAAGGAACTAAAAAGGAGActtaa
ggaagaagaagaagacaaCCTTACGCTCGCTGAGCTAAAACAAAAACTGA
GGAAAGATTAatcgaaattattttctttttagacTAGAACAatgaaaaac
tttatatatCTATCAATAATCGTATCAATATGGTATCCAGCTTCGACGCA
AACGTTGAAGGAAACTTGTTACACCGTTGGAAAATTAAGTAATTGCCAAA
CTATAACCCCTCTTGGCTATTATACCTTACCAAAGATAAAAGGATGTGCA
GATATTGACAATAAACAAGACAGACTCGAAACTTTCAAAGGTAGAGTTCT
GAGATATAAACCGACCATGACGACCTTTACTCTTTGGAAATGTAAATTAA
TTTATGTACGAACAGAATGCTCCGTTTGGGGAGAAACTTCTATTAAAACT
CTGTTCACCACCGTCACAAGAAACGATTGCCATGACATGATCAAGCTGGA
AAGAACAACTGGATATTATAAAGAAACACTCCACAAATTTGGACGCCACT
ATTACAAGAGCATGCCAAGGAAACCTGCACCTTGCCACACCTTTTCTAAG
GCAAATACTCATTACGCAGCTCATTATGAGATCCAGGGATACACCGTCGA
AGTAATTGGAAATTCAAGTATAATANCCACACCTTTTCTAAGGCAAATAC
TCATTACGCAGCTCATTATGAGATCCAGGGATACACCGTCGAAGTAATTG
GAAATTCAAGTATAATACAACAGACTATCACACGAGATAGACTTTATCTG
GATAAATCGAATCCAGAATTACTAGACTTTCATGTACCTTCAGAACAACC
AAAAGTAATGTTGGCCTGGTATCTTGCCAATGCACGAAGCCATGACTGGA
TCGATCTCAAACCAATTTCAGACCTTACCACCATCCAAAAGATTGGTGAA
TTCATCCACGTACCAAGCCTTGAAGTAGGAGGACAAATATTGTATGATCA
TCCAATGAAGCCAATCAACA Run BLAST on NCBI protein sequence of TCONS_00028571-protein >TCONS_00028571-protein ID=TCONS_00028571-protein|Name=TCONS_00028571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
YPLYSYVWLTSHKRKKGRSPKFLQKFSGPHQIIELIPPVNYRLKTPNGSV
LKSPVHHDRLKKHVGEAPEPTLTEALKPIEEETWEEEDDISLKELKRRLK
EEEEDNLTLAELKQKLRKD Run BLAST on NCBI transcript from alignment at sc0000691:242491..243760 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028571 ID=TCONS_00028571|Name=TCONS_00028571|organism=Clytia hemisphaerica|type=transcript|length=1270bp|location=Sequence derived from alignment at sc0000691:242491..243760 (Clytia hemisphaerica)
TGTTGATTGGCTTCATTGGATGATCATACAATATTTGTCCTCCTACTTCA
AGGCTTGGTACGTGGATGAATTCACCAATCTTTTGGATGGTGGTAAGGTC
TGAAATTGGTTTGAGATCGATCCAGTCATGGCTTCGTGCATTGGCAAGAT
ACCAGGCCAACATTACTTTTGGTTGTTCTGAAGGTACATGAAAGTCTAGT
AATTCTGGATTCGATTTATCCAGATAAAGTCTATCTCGTGTGATAGTCTG
TTGTATTATACTTGAATTTCCAATTACTTCGACGGTGTATCCCTGGATCT
CATAATGAGCTGCGTAATGAGTATTTGCCTTAGAAAAGGTGTGGNTATTA
TACTTGAATTTCCAATTACTTCGACGGTGTATCCCTGGATCTCATAATGA
GCTGCGTAATGAGTATTTGCCTTAGAAAAGGTGTGGCAAGGTGCAGGTTT
CCTTGGCATGCTCTTGTAATAGTGGCGTCCAAATTTGTGGAGTGTTTCTT
TATAATATCCAGTTGTTCTTTCCAGCTTGATCATGTCATGGCAATCGTTT
CTTGTGACGGTGGTGAACAGAGTTTTAATAGAAGTTTCTCCCCAAACGGA
GCATTCTGTTCGTACATAAATTAATTTACATTTCCAAAGAGTAAAGGTCG
TCATGGTCGGTTTATATCTCAGAACTCTACCTTTGAAAGTTTCGAGTCTG
TCTTGTTTATTGTCAATATCTGCACATCCTTTTATCTTTGGTAAGGTATA
ATAGCCAAGAGGGGTTATAGTTTGGCAATTACTTAATTTTCCAACGGTGT
AACAAGTTTCCTTCAACGTTTGCGTCGAAGCTGGATACCATATTGATACG
ATTATTGATAGatatataaagtttttcatTGTTCTAgtctaaaaagaaaa
taatttcgatTAATCTTTCCTCAGTTTTTGTTTTAGCTCAGCGAGCGTAA
GGttgtcttcttcttcttccttaagTCTCCTTTTTAGTTCCTTTAATGAT
ATATCATCCTCTTCCTCCCACGTTTCTTCCTCTATCGGTTTCAGCGCTTC
TGTTAGCGTTGGTTCTGGAGCTTCGCCAACGTGTTTTTTTAGACGGTCAT
GATGAACAGGACTTTTCAGCACAGATCCGTTTGGTGTCTTTAATCTATAA
TTGACTGGCGGAATAAGCTCAATTATTTGATGTGGACCAGAAAATTTCTG
TAAGAACTTTGGTGATcttcctttctttcttttgtgtGATGTGAGCCAGA
CGTAAGAATATAAGGGGTAT Coding sequence (CDS) from alignment at sc0000691:242491..243760 >TCONS_00028571 ID=TCONS_00028571|Name=TCONS_00028571|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0000691:242491..243760 (Clytia hemisphaerica)
tTAATCTTTCCTCAGTTTTTGTTTTAGCTCAGCGAGCGTAAGGttgtctt
cttcttcttccttaagTCTCCTTTTTAGTTCCTTTAATGATATATCATCC
TCTTCCTCCCACGTTTCTTCCTCTATCGGTTTCAGCGCTTCTGTTAGCGT
TGGTTCTGGAGCTTCGCCAACGTGTTTTTTTAGACGGTCATGATGAACAG
GACTTTTCAGCACAGATCCGTTTGGTGTCTTTAATCTATAATTGACTGGC
GGAATAAGCTCAATTATTTGATGTGGACCAGAAAATTTCTGTAAGAACTT
TGGTGATcttcctttctttcttttgtgtGATGTGAGCCAGACGTAAGAAT
ATAAGGGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028571-exon-sc0000691-1491911889:242491..243760 | TCONS_00028571-exon-sc0000691-1491911889:242491..243760 | Clytia hemisphaerica | exon |
| TCONS_00028571-exon-sc0000691-1510915933:242491..243760 | TCONS_00028571-exon-sc0000691-1510915933:242491..243760 | Clytia hemisphaerica | exon |
| TCONS_00028571-exon-sc0000691-1575043694:242491..243760 | TCONS_00028571-exon-sc0000691-1575043694:242491..243760 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000691 | supercontig | sc0000691:242491..243760 . |
Blast
The following BLAST results are available for this feature:
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