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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028555 ID=TCONS_00028555|Name=TCONS_00028555|organism=Clytia hemisphaerica|type=transcript|length=948bpRun BLAST on NCBI transcript from alignment at sc0000691:158728..168703- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028555 ID=TCONS_00028555|Name=TCONS_00028555|organism=Clytia hemisphaerica|type=transcript|length=9976bp|location=Sequence derived from alignment at sc0000691:158728..168703- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00028555 vs. Swiss-Prot (Human)
Match: CATIN (Cactin OS=Homo sapiens GN=CACTIN PE=1 SV=3) HSP 1 Score: 201.445 bits (511), Expect = 2.678e-58 Identity = 127/313 (40.58%), Postives = 194/313 (61.98%), Query Frame = 3
Query: 3 ARLRSSIRITNGRAKPIDLLAVYINPEEENLEIQMHEPYAALVGLSIDDLEDLLADITVYLEIDQEKNIDFWEDITIIVKDELAKLKKMRGE---VSNRRDVINSSVQTDVNTIFKGKTYSQLIALQKQIRAKIKAGG-SIDVGYWETLLQQLKAIMAKTRLKERHQXXXXXXXXXXXXXSTVDDDAELPSTKRYKARLGR-LDEEDNNDEPSGGELKETNKESDNEAGPSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXFTEAELNDKAMKEYEEQCYSPKLIHFGDVD-EEKWLKPAEDSLKLSYLREKVK 923
A+LRS IRI +GRAKPIDLLA YI+ E+++L ++MHEPY L GL++ D+EDLL DI VY+E++Q KN DFW D+T I +DE++KL+K+ RR+ +N+SV +DV ++FKGKTY+QL + + I KI+AGG ++D+GYWE+LLQQL+A MA+ RL+ERHQ +L+ KL ++K E V+ + P K+ R L+ ED P G +E GP+ A + EG+ + E E +L +++ +Y+ YSP+L+ ++ + L+P ED +L R++++
Sbjct: 292 AKLRSKIRIRDGRAKPIDLLAKYISAEDDDLAVEMHEPYTFLNGLTVADMEDLLEDIQVYMELEQGKNADFWRDMTTITEDEISKLRKLEASGKGPGERREGVNASVSSDVQSVFKGKTYNQLQVIFQGIEGKIRAGGPNLDMGYWESLLQQLRAHMARARLRERHQDVLRQKLYKLKQEQGVESEPLFPILKQEPQSPSRSLEPEDAAPTPPG---------PSSEGGPAEA--EVDGATPTEGDGDGDGEGEGEGEAVLMEEDLIQQSLDDYDAGRYSPRLLTAHELPLDAHVLEPDEDLQRLQLSRQQLQ 593 The following BLAST results are available for this feature:
BLAST of TCONS_00028555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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