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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028549 ID=TCONS_00028549|Name=TCONS_00028549|organism=Clytia hemisphaerica|type=transcript|length=593bp
ATTGAtataaaatgtttgtttttgtacTTCGTATAACAACACACTGAGAG
GGATTTTCTACAAGTTGATATGAAACTATTTTTTGATGTAAAGAGAAATT
AAAACTacgtattaaaaaaaactttaaaaaaattactgaaAGTAATCAAA
TTTACAGACCAGCCAATCAGCAACCAAGATGTGTTACAAAGTCACTTGTC
AGAAATGCCAAAAACCAACATGGCAAGGATGTGGAAATCATATTGAACAA
GCTTTGAAAGACGTTCCTGCAGAAGATAGATGCAAATGCCCTCGATAAAT
GGTTGATCTTTGCAACTGAAGAGACGTTATGATTCTGTAAATAGTTGACG
CATATAATATCTATTTAATCTTTTTAATAAGCATTTTACTTATAAACTAT
TATACAATGTGGTATTCAAAAAGAATGACGAGAGTACTGCCATATTGTAA
GAGAGCTCTACAAACAGGGTCATTGAACATACTGTTCATTACTGAAATCC
TAATTCACATCTGATAATTGTCTTTGTTACCTTTGTGGCTTGTTTTTTTC
AGCTATTTCTCTTCTCGAACACGACATCAAAAATCCTAATTCA Run BLAST on NCBI transcript from alignment at sc0000691:125472..129483+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028549 ID=TCONS_00028549|Name=TCONS_00028549|organism=Clytia hemisphaerica|type=transcript|length=4012bp|location=Sequence derived from alignment at sc0000691:125472..129483+ (Clytia hemisphaerica)
ATTGAtataaaatgtttgtttttgtacTTCGTATAACAACACACTGAGAG
GGATTTTCTACAAGTTGATATGAAACTATTTTTTGATGTAAAGAGGTAAC
TACCACATGAGattttttggttttcttattcCTTGTACCGCATCTTAAAA
GAACTTATTACTTAAATGCTTTATCCTAGTTTATGCATACAGAGGAATTA
CATCTTTATTTGGACACCGAATATTCTCTATTTATGCCAGTGTTTTCTTG
TACTTTTTGCTTTTATACACTTTTCAACTTTCAAGAGGTTATTTTAGCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGTTTTTAACCTtagaataatagaatttctatccccattagcatt
tcaataggaaattttatctcaactgaggaaaaaggttccTCTGGGGCTGT
GAAACACCCATATGTTTCAATTTAATTGTTCTGCTTTTATATActggaat
aaaaaatgttttcgaagttgaatgctttgttttttgtaaagaaccgtgga
taactggatagaaaagaaatagcaaGCTGTATAGTAAATTATAggtgaaa
aataaccaatcaatcttTGCAATAACTAAAGTAGAGCAGAGCAAAAGTGT
CTTGACTGTTTCTGCGTCTTTATCTAGAATAGATAGAGATAGATCAGGTT
CATCGACAGCTTAAATAACCAGAGTTggcattttgttgaaagtccaaAGA
CCCGCATTCTTCTAACCGAATTCCAAAATAAGCCTTATTTAGGTGGTCAC
tatgctaaaatgtcaaaataaattttagtacatgtgtactaaaattcctt
tttcaaaaattaggtgggggtatgtcaaaaatcgtcaaaaaacctTGTAG
TACTCATATGTCCATATGTCTttggattttagtaccgaccccccccctga
tttTAGGCCTTGTTGTATAACAGACGTATTCTCATTAACTTTCAATTATA
CTCTATGTAGTGTATATACccgggagggggtactaggtttgcgaggtgac
gggtatgtccgagccaaaaatcgacccttagagagacttttctcaaactt
gttgtcaatttttactcgatttttgtccacattttggaaaatcacgaccc
ttttgagagaagaaattttgaatttcgtggTTTTtagacccttacagaga
ctcaattttcttAATGGTTTTTGAAGCcatttgagagacttttgagggtg
TTAAAAAGgaacccttatggctcgcacatacccggcatccattttgccta
agtaccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCCCCCCCCTGATTTTAGGCCTTGTTGTATA
ACAGACGTATTCTCATTAACTTTCAATTATACTCTATGTAGTGTATATAC
ccgggagggggtactaggtttgcgaggtgacgggtatgtccgagccaaaa
atcgacccttagagagacttttctcaaacttgttgtcaatttttactcga
tttttgtccacattttggaaaatcacgacccttttgagagaagaaatttt
gaatttcgtggTTTTtagacccttacagagactcaattttcttAATGGTT
TTTGAAGCcatttgagagacttttgagggtgTTAAAAAGgaacccttatg
gctcgcacatacccggcatccattttgcctaagtacccccccctggATGT
GTATAAGTATTGTCCATTTTCCTTTGCTTTTTCTCTTAGAAATTAAAACT
acgtattaaaaaaaactttaaaaaaattactgaaAGTAATCAAATTTACA
GACCAGCCAATCAGCAACCAAGATGTGTTACAAAGTCACTTGTCAGAAAT
GCCAAAAACCAACATGGCAAGGTAtaactacatttttttatgagaaccag
AAAACATTATGCAACATTGAGACTTAGCTTGAGTTGACACACTTTCGTGA
TATCAAATAAAGTAATTCCTAAAACCATTCATATTCATACCAAAACAAAT
ATTTCGGCAGTAGAACCTTTTGTCAATTGAGGATTTTTTATTTAACGGAC
ATTGTGTTGGGAACAccattttatcatgattagtgAATTATTGTTATATT
GTTTTATATAAGGATGTGGAAATCATATTGAACAAGCTTTGAAAGACGTT
CCTGCAGAAGATAGATGCAAATGCCCTCGATAAATGGTTGATCTTTGTAA
GTTTATTTTCCGGGGGTACTTACTGTGGAAGTAAACAAATGTTCATTGTT
GCATCCAGTTTTTCTTCTTACAACAGTTAGAGTGCACTACCGAAGGCCGT
ACCATTATCCAAAAACGTCTTCGTCTTATTGCCCTTTATTACGCCGGAGT
TTATTGGCGTTATCTTTTGGCCTGTGGcggaatacactcttctcgagatg
cataaatttattgttgtcctcgttttcaaacagatttcattgctacattg
atctcgagaagagtgtattaagaCCGGTgtaaaattggctaaaatttaga
ttttttaacctAATAGCAGCGTTGACCTGTTTTTCTAATTAATCCTAAAT
AAAACGCAAGGCCTTTCCGAGGATTCATGATCCGGGGGACAAAAGACGTC
ATCCATCATCAAACTTTTAAATGGTTGAGAATTCCTGAAACTTGGTAAGG
CATAATCATGCAAAGTTTGAATCGCAAAAACACAAAATGTGAGGCTAAAC
aaaagttagaaaaatttaTGAGATTTCTCATGGCTTTATCTGAAGTGATT
TAGGTCCGGCAAAAAAAGGGGAAACTTTAACGCACCTTAACGGATTGTTC
TTTCATCGTTTTGTATCTTTTTGTTTCTAGGCAACTGAAGAGACGTTATG
ATTCTGTAAATAGTTGACGCATATAATATCTATTTAATCTTTTTAATAAG
CATTTTACTTATAAACTATTATACAATGTGGTATTCAAAAAGAATGACGA
GAGTACTGCCATATTGTAAGAGAGCTCTACAAACAGGGTCATTGAACATA
CTGTTCATTACTGAAATCCTAATTCACATCTGATAATTGTCTTTGTTACC
TTTGTGGCTTGTTTTTTTCAGCTATTTCTCTTCTCGAACACGACATCAAA
AATCCTAATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028549-exon-sc0000691-1491911889:125472..125566 | TCONS_00028549-exon-sc0000691-1491911889:125472..125566 | Clytia hemisphaerica | exon |
| TCONS_00028549-exon-sc0000691-1510915933:125472..125566 | TCONS_00028549-exon-sc0000691-1510915933:125472..125566 | Clytia hemisphaerica | exon |
| TCONS_00028549-exon-sc0000691-1575043694:125472..125566 | TCONS_00028549-exon-sc0000691-1575043694:125472..125566 | Clytia hemisphaerica | exon |
| TCONS_00028549-exon-sc0000691-1491911889:128111..128242 | TCONS_00028549-exon-sc0000691-1491911889:128111..128242 | Clytia hemisphaerica | exon |
| TCONS_00028549-exon-sc0000691-1510915933:128111..128242 | TCONS_00028549-exon-sc0000691-1510915933:128111..128242 | Clytia hemisphaerica | exon |
| TCONS_00028549-exon-sc0000691-1575043694:128111..128242 | TCONS_00028549-exon-sc0000691-1575043694:128111..128242 | Clytia hemisphaerica | exon |
| TCONS_00028549-exon-sc0000691-1491911889:128484..128567 | TCONS_00028549-exon-sc0000691-1491911889:128484..128567 | Clytia hemisphaerica | exon |
| TCONS_00028549-exon-sc0000691-1510915933:128484..128567 | TCONS_00028549-exon-sc0000691-1510915933:128484..128567 | Clytia hemisphaerica | exon |
| TCONS_00028549-exon-sc0000691-1575043694:128484..128567 | TCONS_00028549-exon-sc0000691-1575043694:128484..128567 | Clytia hemisphaerica | exon |
| TCONS_00028549-exon-sc0000691-1491911889:129202..129483 | TCONS_00028549-exon-sc0000691-1491911889:129202..129483 | Clytia hemisphaerica | exon |
| TCONS_00028549-exon-sc0000691-1510915933:129202..129483 | TCONS_00028549-exon-sc0000691-1510915933:129202..129483 | Clytia hemisphaerica | exon |
| TCONS_00028549-exon-sc0000691-1575043694:129202..129483 | TCONS_00028549-exon-sc0000691-1575043694:129202..129483 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000691 | supercontig | sc0000691:125472..129483 + |
Blast
The following BLAST results are available for this feature:
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