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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028546 ID=TCONS_00028546|Name=TCONS_00028546|organism=Clytia hemisphaerica|type=transcript|length=664bp
CTAAAAAGCAGTTTCAAAAAAACCTTGTGTACTATAACTTCTGAAtaaca
tttttgtaaacaaaataatttcgtTTGAGATAGATTATTCTGCAAAGTTT
TTTTGTGCATGAAAGTTATTTGACAAGGTGTTGAGATTTTCTCTATTAGc
acTAAAGTGATGTTGCGTGTACATGGACATTgtttaaatttcaaggaaat
taACCCTAAACTAAgAGTTACAAATCCTTTTGTTTGCACAAGTGAAACCA
ACTGGTTAGCCGAGCTATAACTTGGAACCTTGACGTAAAGAAATTATCAA
ACGGCTGAACAAGACAACATTTTGGCTGGTGATGAATAAAGATTCAGACG
CCAGCGACTTTAATATAAGCATAATGATCAAATGATTGATAAATATATAC
TGTATTGTGTCACAGACCCGTTGGTACTTCTACATACTGTAAAAATCAGA
CAAATTGTACCCGGTTAGAGAACCCACCCGGTGATCTATAATGAAGGTTT
TTTTAGCCTTGGGATGttgttaactttttttcttttaaaatcctaagaat
atttttaatttcatcttTTAACGGGTATTTTATCCATTTTCAGAGAAATT
GGGTCTAAAatgttctttcattttaacaaACTATAACTATATAgctataa
ctctctaacttcag Run BLAST on NCBI transcript from alignment at sc0000691:63852..66310+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028546 ID=TCONS_00028546|Name=TCONS_00028546|organism=Clytia hemisphaerica|type=transcript|length=2459bp|location=Sequence derived from alignment at sc0000691:63852..66310+ (Clytia hemisphaerica)
CTAAAAAGCAGTTTCAAAAAAACCTTGTGTACTATAACTTCTGAAtaaca
tttttgtaaacaaaataatttcgtTTGAGATAGATTATTCTGCAAAGTTT
TTTTGTGCATGAAAGTTATTTGACAAGGTGTTGAGATTTTCTCTATTAGG
caagttaaattttttagataaaTCTTTAATTATAAGTGCAAGTTTATGCT
AATCGGTAACCAGTCAGTTAGCCATGGCCAGATATATTTTGGATTGTATT
TCCATTATCCTGTTTAGCCTGAATGTCTTGGTTGTAAACTGTTTTTGATC
TTTCTTCTATTAACTCTGCCTAAATCCTTGTTGTAAGGCCATGACCAAAA
AATCTGTAGCTTCACCCAACAATTGAATTAGCACTTTTTGTTATTTAATG
CTAATAATTATAaagtatttatatttattttttattttagcacTAAAGTG
ATGTTGCGTGTACATGGACATTgtttaaatttcaaggaaattaACCCTAA
ACTAAGTAAGTCATTATTATGTCGCAACATGGTCTTACTCAGTATTTTga
ctctcaaaattttattttacttccTCTCCAATGAAGAAAGTGTTCAGTAA
AAGACTActttaaaacaatagaaattctttCCCCGTTGGTTTTTTGATGG
AAATGTTCATCCCCACTGTGAGAAGAAGTTCCACCGGCGCTGcaagacag
gggtgttattaataaaaacaaagcttgAGTTAAAAGAAGAGTTCAAGAGT
TAAAATACCTGGACTTTttcatcagtgaaatatttttccctaaaatgtct
atcaaaaaaaaattttgaatcaccTCTAGATATGATTCTCAATAAGTTCG
CTCAGTCTGTAAATGTAACTTTTCAAATTGGTGGCCCCTCCCAAatgttt
tcatcaaaagtttcaaaagacacccctgtctcactgcctCTTTGGAACTT
TTGCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNaatcccaatgggaatagaaattatattgttccaaggttaaaag
atccagtggggatggtttttgaatgcaacttttaaacattgaatttagaa
tggggatgaaatgaaagtcaatttttataGTGGACTGGAATCTCAGGGTA
ATTTTCCATCGGGGACGAAGAGAATTTGACCTATTATTAGAACACATACC
GTCTGGTCCCTCAAGTGTAAGGTTTTACTTATGATGTAAAGTACGATTTA
GCTGGTGAAGAACTTGTGATGTCACTTAAACTataagattttgtttttgt
tcctttttaggAGTTACAAATCCTTTTGTTTGCACAAGTGAAACCAACTG
GTTAGCCGAGGTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttgtttcacttttcaaa
gatatttaacCATATGAACACTTGAGCTGATTTGTAACTCTcaaatagcg
ctccgcaacgcatacgtcataattattacttttaaatgttttacatttgt
acgagttgcaatgcTGCTCAATTAAAGATGCATGCAAGTTCTTacatatc
ttttgtcaaatgatgcaattaatGTGCAAAGAAACGCAAAAGGATTGTag
ctcgtacaaacacatcaagAAGAGTAATTATTATGTCAAAAGTGTGCGCT
ATGTAAACCTTAAAAGATGCTTACCCTATTTCCCCGCCTATTTCCCATTC
AAGCTaccaaattgacaaaattttggaactccttctgaaaattttatttt
gtctttcagCTATAACTTGGAACCTTGACGTAAAGAAATTATCAAACGGC
TGAACAAGACAACATTTTGGCTGGTGATGAATAAAGATTCAGACGCCAGC
GACTTTAATATAAGCATAATGATCAAATGATTGATAAATATATACTGTAT
TGTGTCACAGACCCGTTGGTACTTCTACATACTGTAAAAATCAGACAAAT
TGTACCCGGTTAGAGAACCCACCCGGTGATCTATAATGAAGGTTTTTTTA
GCCTTGGGATGttgttaactttttttcttttaaaatcctaagaatatttt
taatttcatcttTTAACGGGTATTTTATCCATTTTCAGAGAAATTGGGTC
TAAAatgttctttcattttaacaaACTATAACTATATAgctataactctc
taacttcag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028546-exon-sc0000691-1491911889:63852..64000 | TCONS_00028546-exon-sc0000691-1491911889:63852..64000 | Clytia hemisphaerica | exon |
| TCONS_00028546-exon-sc0000691-1510915933:63852..64000 | TCONS_00028546-exon-sc0000691-1510915933:63852..64000 | Clytia hemisphaerica | exon |
| TCONS_00028546-exon-sc0000691-1575043694:63852..64000 | TCONS_00028546-exon-sc0000691-1575043694:63852..64000 | Clytia hemisphaerica | exon |
| TCONS_00028546-exon-sc0000691-1491911889:64292..64356 | TCONS_00028546-exon-sc0000691-1491911889:64292..64356 | Clytia hemisphaerica | exon |
| TCONS_00028546-exon-sc0000691-1510915933:64292..64356 | TCONS_00028546-exon-sc0000691-1510915933:64292..64356 | Clytia hemisphaerica | exon |
| TCONS_00028546-exon-sc0000691-1575043694:64292..64356 | TCONS_00028546-exon-sc0000691-1575043694:64292..64356 | Clytia hemisphaerica | exon |
| TCONS_00028546-exon-sc0000691-1491911889:65262..65311 | TCONS_00028546-exon-sc0000691-1491911889:65262..65311 | Clytia hemisphaerica | exon |
| TCONS_00028546-exon-sc0000691-1510915933:65262..65311 | TCONS_00028546-exon-sc0000691-1510915933:65262..65311 | Clytia hemisphaerica | exon |
| TCONS_00028546-exon-sc0000691-1575043694:65262..65311 | TCONS_00028546-exon-sc0000691-1575043694:65262..65311 | Clytia hemisphaerica | exon |
| TCONS_00028546-exon-sc0000691-1491911889:65911..66310 | TCONS_00028546-exon-sc0000691-1491911889:65911..66310 | Clytia hemisphaerica | exon |
| TCONS_00028546-exon-sc0000691-1510915933:65911..66310 | TCONS_00028546-exon-sc0000691-1510915933:65911..66310 | Clytia hemisphaerica | exon |
| TCONS_00028546-exon-sc0000691-1575043694:65911..66310 | TCONS_00028546-exon-sc0000691-1575043694:65911..66310 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000691 | supercontig | sc0000691:63852..66310 + |
Blast
The following BLAST results are available for this feature:
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