TCONS_00028502 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028502
Unique NameTCONS_00028502
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028502 ID=TCONS_00028502|Name=TCONS_00028502|organism=Clytia hemisphaerica|type=transcript|length=3575bp
GAGCGAGAACAAGGTTCAAATTTCCACAAACAAGAAATTCAGTTACTAAA
GCTGATTTAGACCATTACCCGGCAAACACATGAcataaatttgaacaaaa
tactttttaccatttttcaggTGTACATGAGTGTGGTGATTTTCATGCTT
GCATACAAATACTTATTACACGAAATGAAAAAGTCCATTCAGCACAAACC
AAAATTCAACAACATGGCAAACTGCAATGTGCAAGTTCCACCCCCTACAA
CTCAACACCGAATCAAAGAGACAGAGatttaGTAAATCTGTCAAACGAAG
AAATCTTACAGCTTTGTAAAGAGAAGAAACTTGCTTTGCATAGCTTGGAA
GCCACGCTCAACGATCACAAGAGAGCTGTCGAAATAAGACGATCATTTGT
GACAGCTGAGATTGGAAAAGAAGCGGACGCACTGGATGATCTACCGTACG
AAAATTACAATTATGAAAAGGTTTATGGTGTCTGTTGTGAAAATGTCATT
GGTTACTGCACTATTCCTTTGGGCGTCGCGGGGCCTCTGTTGCTAGACAA
CAACAAATTCTATGTTCCCATGGCAACAACTGAAGGTTGTTTGGTTGCGA
GTACTAACCGTGGTTGTTCAGCATTGAGGGCGTCTGGTGGTGTATTCAGT
TACTTGATCGGTGACGGAATGACTCGTGGTCCAGTCGTACGTATGGCGTC
GGCTCGTGAAGCGTGTCTGGTACGTGAGTGGATTGAAGAACAAGATAATT
TCGTCATTCTTTCAGAAGCATTCAATCAAAGTAGCAGGTTCACTGAACTT
CAAGAGATCTAGTGTGCGATGGCTGGCAAACTATTATTTCTTCGTTTCAA
AGCTTCCACTGGTGACGCTATGGGAATGAATATGGTCTCAAAGGGTACTG
AACACGCGCTGAAATATTTGAAGATTCAATTCCCAAGTATGGAAGTGGTC
AGTCTCAGTGGCAATTATTGTACCGACAAAAAACCGAGTGCTATCAACtg
GATTGATGGTCGTGGTAAAGGTGTCATTTGTGAAGCTACCATCCCTGGTG
AAATCGTCCGAAAGTTGTTGGGTTTGGACGAGATCCGTGGAATGCCCGGG
AAAATTATTAGCCGGTGAACTATCTCTTCTCTCAGCACTAGCGTCGAATC
ACTTGTTGAAAAGTCACATGAAATTAAACAGACAATCCACTCCATCATCG
ACTGGTGATAAACCTACGACCACATGTCCTGTCCTGTGATTGATGGAAAG
TAGTTTTAGGATTACAGTTTAGACTCTTTTTAATTGGAACCTATCTCATT
AATGTGAGATGTGAGATAATTGATGTGAGATATGTGCGATATTTGATGTC
ATTGTTTCGGCGCGCTCGataatacagggtgtccggaaaaaagtatcgag
tcgtaccacttctatagaaagttcttgtgtgtgtttcactagattttcaa
tgtttatcaaagctTTTATCATGACACAGAGAGTCATATTAATTGTCCAG
AGACcttttttatgaataacttttacaaaaaacaattctcaataacttta
acgtcatgaaatGTAATTCTTCTTAATCATAATACAGTAGTTCCATttat
attaccgagtttatgtaattgcacttttgaggacggtagagtgactgaag
cgatttggaaaaacccgcaattccgccccgcaaaatcgagggcagtaaaa
gtgctgatttaccgtcgtcctcagcgggtcaggatctactcaaattagaa
ccttaccgtctccgtcgctgaaaaacacacatacataaactcgctattat
acTGAGACGGAACGACGGAAAAGTCGTCTGAGacaaaaagtttgtaaaat
ttgatctgtggaggagatcctatatattgaaacatgaatggaaagtatac
tcctccataatgctcgtctcagacaaattaatcgtctcagtataaataga
actataacgactgttgtaaaaacaattattgtgttggtatatattttctt
acattttgttaaacacacgcaacaaccttctactcagaatcatgttcgaa
ctcgatactttttttccggacaccctgtacagtACTTATTTCTGACGTTA
TTCAGCCAAATGAGCTTCAACTAAATCTTCTGTTGTAAAAAATTGAGAGA
TGTACTATTCCAGAAATGATCTACACAAGAGAGGTTTCAAAGAGCAAATA
TTTCTAGATAGAGAGTTCCTACAATtatcaaaaaattatgaaatttatga
atgagtgtatattttttttttggatttacatacaattttattttttattt
ggaaaatttttgaaaatatcatttttttatttatctaaGCCATCATGTAT
GTTGGAAAGACTGGACTGGATGTGTCGCTAAACATCTTTGTGCTCGACTC
AATGGCAATAGAAAAGTAATTGTCATGATTATGCTTGTGAGCTTGACCCT
TGGAAAgacaaaattgctaaaaaagtgacccttagagagacattttcaca
aaaatttcgtCGATTATCAAAAGAATTCCCCAAAACATTCGgttgaactc
atgtaattcgaactcctataattcgaacaGATTCTGTGGTCCCCTCAGAA
TTTACCTCGAAACCCTTACAAGAAAactcctataattcgaacccatgTAA
TTCGAAAAATCACGTAAATCGAACAGATTTTCCGGTCCCATCTAGAAATT
TTGATcgtgtaattcgaattttcgaattttcgatttttttgagtttttga
agcTGACAAACTCGACATTTTGTCAATCCAACGTTTTGACGTTCGAATAA
TTGTTTGCCAatagaatgttttctttttttatattcgATTGGAGCTCGTC
CACTGCTTTTGCCTTCTATTCTTCCATTTCTTATCAAGACAAGAtgggaa
aaagaaaacataacgAGAAGTCACTTTAAAAAGGAAATATGAAGCTCTCC
GTGATTTGGAGGATAGTATGTCCAATAAAGACGCAAAAGTAAAATTGGGA
AAGACTTTTTTCATCGAATTAGGTCAAAAATACGAAAACTCATCTAGTTC
GAAACTcgtgtaattcgaacaaaattctcggtcccttgagaattcgaatt
acatAAGTTCAACTgcgctgatttttgcaacccttaagttaaagagactt
tgaaaggtttaaaacccgacccttaccgtccggaCATACCCAGCATTCAT
TTTTTGCCTAAGACCATCTCCCCCCCCCTCTTCCGGGGTTAGCTTTTTGA
ACATTGTCTTCGTTCTTCCTtatgtttaaattttcaattcttctttttat
ttggtttttcaTTACTTTGTCACGTGAAGGTGTTGAAATTCtactctttt
gtttttcttttttgatcaGAGTGTAAAAAGAAGCCGATTTACTTTCCAAT
AAAAACATTGGCTATTTCaatcacttttttataagaaccaccTAGTCAAA
CAGCCAAAGCTATTTGCATGAATATTCATGCTATTTATTGTAAGAATTTC
TAGGAAACACTCCGGTTTTTGCACCATAGTAGTGGTGAATCTTAAACAAT
ATTTCTGTAGTctgcgcgcatcccc
Run BLAST on NCBI

transcript from alignment at sc0000683:61553..69494-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028502 ID=TCONS_00028502|Name=TCONS_00028502|organism=Clytia hemisphaerica|type=transcript|length=7942bp|location=Sequence derived from alignment at sc0000683:61553..69494- (Clytia hemisphaerica)
GAGCGAGAACAAGGTTCAAATTTCCACAAACAAGAAATTCAGTTACTAAA
GCTGATTTAGACCATTACCCGGCAAACACATGACATAAATTTGAACAAAA
TACTTTTTACCATTTTTCAGGTGTACATGAGTGTGGTGATTTTCATGCTT
GCATACAAATACTTATTACACGAAATGAAAAAGTCCATTCAGCACAAACC
AAAATTCAACAACATGGCAAACTGCAATGTGCAAGTTCCACCCCCTACAA
CTCAACACCGAATCAAAGAGACAGAGGTTTGAAATTTATTCAAATAATTA
ATCTAAAAATCTTTAAACATGCTACTTTTGTTTTATTGATTTTGGTGTCT
TCAGCCGCGGAACTTTGCCAAAGTTGCTAACAATCATAGGAATACTAACA
ATTTCTACTAACAATAAGAGCTTTCCCTAGGATTGTCTCCTTGCTTATTT
TGCTTCGGTTTGAAAATGCAAGTGGATGATTAAAAAAATATCGAAAATCA
AGGCCTCGTTGAGAATAGTGCTAATTTGAAAAGACAATAATTATAATTGA
GGGTCCGGTTCGGGGGTCTTCATAAAATCTGAGTGCAAATAGATAGAGTC
GATATTTTACGTGGATAGCCCAGACAGTCTTTCAATTGTTTTCACGTGGT
CTACGGACAGCTGAACGGATCATTGGAAATAGGATTCGAACCTTTAGTTT
GTACCACTGACGCCGTTGATCACTTAAAATATGAATGATTTTTTTCTAAG
ATTTAGTAAATCTGTCAAACGAAGAAATCTTACAGCTTTGTAAAGAGAAG
AAACTTGCTTTGCATAGCTTGGAAGCCACGCTCAACGATCACAAGAGAGC
TGTCGAAATAAGGTGCGTATATATTCAGGGATTTTTCTAAGCACTTTGAG
CTGGGGTTTTTTTTGTAAACTTAGATTGAGTTTGTAATATGCCTGAAAGG
GAATTTTCGGAACAAAGTTGTACCATAATGTCGACATCCCCCTTCTAATT
TCGACACCCTTCTTTAGAGATATGAATGATTGGAAGGTCGGAATTGCTGG
TGGAAACTATTTTTCTTTGCTTATCGATGAGAGGGTGGCCGGTATACGGA
CATAAAAAGTGCTTAGAAAAATCCCTGATATTTGGTTGTCAGTTTCTCAT
TGAAGATTTTCAAAAGACTCGATAAATTGCACAATGTAACGAAGTTATCT
GACTTTTCAGATTTACGTAGCCGATTTGTCCATTCTGTCTGTGTATTTTG
GAAGCAATTAAAGTCCATTAGAATTAGTCTGCATCCTCTTTTGCTACCGT
GTGGAAACCATGTAGCGCACTTAATTAATCTAATCCCCTTGATTTTGGCT
TCAAGAAGTTTGCAGTGGGAGGTCTGGTAACCCAGCCCTCGTTTTTGGGG
AATGGCGGGTCCAACCGAAATATTTTTAGCTTTACGCGCAGGGGTAGTTG
AACCCGACTTGGGATGTGGCAAAGGACGACTATCATAACTCTCCGATGGG
AAATTGGCCTGCTCCTTTAGAGCTATAGCGTGGGCGACCACCGATCCACC
ATTGGAATATCAGATAGATTGATTTTTCACTTTGACTTTTCAGACGATCA
TTTGTGACAGCTGAGATTGGAAAAGAAGCGGACGCACTGGATGATCTACC
GTACGAAAATTACAATTATGAAAAGGTCAGGATTACTAAGCTGCTAATTT
ACAGAACTTACTCTACTTGCACTATTTTAGCTTTTCTCGAGAATGTTAAC
ATCGCTCTCTAGCCCTCATTCCCAAAAAATGCAGTATAAATCGACATCGA
GCGCTTCCATAAAGCGAACCTGTTTTTCCCTTCCCCCTTTCAGACATTTT
TGTCTCTATTATTTGAACGGAGATTATTGATGTTCAAGTTGTGAATGTTC
AACACTCCGATGTCTCCAACTGACTTTAACCTTTATTTTGTCTCTGGTTC
TTTTAGCCCCATCGCGTACGACCTTAAAAACTCCTGATCTTGAATACAAG
TTTTTTTTATTTTTGAAGCCTTGGGATGTATTTTACTTTTTTAGTTTTAC
GCCTAAAAGTAAAAATGTTCTTAACATATTCTTATTTTCATCATTTTGTG
AATGTGTTTGTGCAATTTTCTTATAAGAAATCGGGTGTTTTGGAGTTTGC
AAAGCCTTAAAATGCTCTTAACTTGTTCTTAATATTGTAGCCATCGAAGC
CTTTTGTTCTTATATAGTTTGTTCTTATAAAAAACGTTTTTTTTATAGTT
TTATAGTTTGTTCTTATAATTAAAACGTGTATTGTCAAATCATTTTTCAG
GTTTATGGTGTCTGTTGTGAAAATGTCATTGGTTACTGCACTATTCCTTT
GGGCGTCGCGGGGCCTCTGTTGCTAGACAACAACAAATTCTATGTTCCCA
TGGCAACAACTGAAGGTTGTTTGGTTGCGAGTACTAACCGTGGTTGTTCA
GCATTGAGGGTACGTTTCTTCGAATTTTATGCTTTCCGTCCAAAATGATC
ATCTTTGACCTCTGGTGGTAATGATTCATAATCGTGTGGATAATTGTTTT
TTTATAACCACTCTATTTTCATTGTTTTCGATAGTAGAAATCAAAAAAAT
TGCACTTGAAAGTAGAGTGCCATAGGAAGCAATTTAATATTGGGGGGGGG
CATAAGTTCAGTGACACCGCGAGGGCCAACTATGGTTTTGCCCGAGGGGG
GAAATCTTGAAATCTAGAGCTCTAAAAACTAAAATAATTCGAATAAAGGC
AAAATTTAAAGGTAAAATATTCCATTTTATGAAAAAAAATCGCTTTCAAA
ACAATTATTGGGGGGGGGGCTAGCGAGGTAGCTAAGGCACTGATGAGTAG
TAAACGATTATTTTTTAAAGTGAAAATGATTGGACCATACTTTACAATTG
ATTTATTCCGTTACAAATTCCTCTAGAAATTAACCATGGGAAGATTTTCC
TCACTTTCCTCAGGCTAGATAGAACCGGATCGATATAATTCTTTAAGATT
TTACCAATCATTAATGGCAATGTACATTGCTCTTCTCATTTTCTTCTCCC
GGGGCATCTTCCAGGCGTCTGGTGGTGTATTCAGTTACTTGATCGGTGAC
GGAATGACTCGTGGTCCAGTCGTACGTATGGCGTCGGCTCGTGAAGCGTG
TCTGGTACGTGAGTGGATTGAAGAACAAGATAATTTCGTCATTCTTTCAG
AAGCATTCAATCAAAGTAGCAGGTTAGATTTTAAGGATCTATTTTGTTTT
GATTTCGACACACTGGTCACATAGAATGCCACCCCCACCCCCCACCTGAG
CTTAGAGGGGGGAGCTAAACCATTTTTGCTTATGATGAATTTTTCAAAAA
TACTGGGGGCTAGCTTGCTAGGGGGCCGAGTGTTGTGTAATAGAACTGGG
GGCAGAGCTGATAGGTTGAAGATATTTTAAATTACGTTAAAAATCTATGC
TTTGGGGAAGGTTTTATCCCTCTTCAAAAAAATGTTTAACTGCGGCACAA
TAAATTTATCGAGAACTTGCATGCAAAATTTCTTTGATATTTTGCTTTGT
GAAGGTGGGGGCTATATGTTTCTAGAATTTAGCCGGGGGCTTTATGTTTC
TAGAATTTAGCCGGGGGCTATTTTCCTTAGCCCCCCCCCCCTGAAAAATG
CTGGGGCTGGACTCCTCTGCACACTATGGACCATTCTTACCATCAAGAAT
GTCGAAAACCAAATAGTTTAAGTACAAGCGGGTTGGACATTCAAGTCCTT
ATTAAAAGATATTTATAACAGTGAAGTTCAAAAAGAGGCTTTTCCTTCAC
AAAAATTGAGCAAAATCAAGTAAAATGCTAAGAATTTGAAACTGTGTTAG
TAATTTTTTCAAAATTTCGTTTGAGACGAAAGACTTTGCTTTTACCACTA
ATAAAAAGACCGTCATTTTCGAAAGTCTTCTCTGTAAAACATTTTGTCGC
CCTTTTTTATCACCATAGGTTCACTGAACTTCAAGAGATCTAGTGTGCGA
TGGCTGGCAAACTATTATTTCTTCGTTTCAAAGCTTCCACTGGTGACGCT
ATGGGAATGAATATGGTCTCAAAGGTAAGATGATATTTTTGCTCGTTATG
TTCTTTTTTTAATTACCTTCTAAATTAGATCCCCTTAAAGCCAGATTGAC
ATTATGTTTTCCGAGGTCTGAATCGCTGGTTCAAAAACGCTGAGCTTGCA
TAAAGATCGCAGTTATTCAACCAATCGTCAAAACAAAAGATAGCGCGTGA
CGTAACTTAATTGTTCGATTCAACACTGCAATGTCTTCACTTTAATAAAC
ATTTTAATGACCAGAGAGTTTACAATGTTTTGACTGCAAAGTGCCGAATA
AGAATTAGAATGAATCTTCTGCGTTTTTAATGGAGCTGTGGAATGTTTTG
GCAGAATAAGCAAACAGACTCATGAATAGATATACTGGCTTTAAAATTTT
TTAAGAAAAGTTCTACTTCCCAAAAATTTTACTCTTTGAACTACCAAATT
AATCAACTCTGATTAATTTGATATTGCCATAAAAGGCAATTACCCTTATT
TTGTGATCAATATTGTTTAGCTTATGACACGAAAAAGATTTTTATACACG
TCTTCTTTATTGTAGGGTACTGAACACGCGCTGAAATATTTGAAGATTCA
ATTCCCAAGTATGGAAGTGGTCAGTCTCAGTGGCAATTATTGTACCGACA
AAAAACCGAGTGCTATCAACTGGTAAATTATTTTTCTCATTATCCTCTCA
GTCTATAAGATCCCCCCTTCTTTTGGCTATTTGTAAACATAACAGGCTCA
AAGGTTATACCACGCCAAATACAAAATGTTATTCGACGCCTCTCTGTATA
TTTGATGTGCCATCCAGTCTATAAAAAAGTTGTATGTAAGTGGATTCCGG
GCTAACCTTCGGGTAGGCAGTTAAGAAAAGGAAGGTATCGGGTTGCCCTC
GACACCGAATTCACATACGTCTATAAAAGTTATATTCTTCTTCTTTTATG
TTTTAGGATTGATGGTCGTGGTAAAGGTGTCATTTGTGAAGCTACCATCC
CTGGTGAAATCGTCCGAAAGGTAGGTATTATGTAAGCAATTTCACTGATC
AATATTATCGTCTTTGTTAGTCTATGTGTATACGTAACTCAAACATGCAT
GGGGAACACAAATTTGTTCGAGCTAAGGAAATTTCGAGTTGCGGTGTAAG
GTTTATAAAGCAGAAGGGACATACAACTTTTGGTAAGTACTTCATGTCTT
CTTGCATGAAAAATGTCTAATGAATGAATGCAATTTCAGAAGGATGGAAA
AAAATATTTCCACCCTATATAAACAGTTTTCTCATGTTAACATTTTGATT
TTAGTTGTACCATATAGAATAACAGATTGTTTCGTGCCGTTTCGGAATAG
AATAACAGATTGTATGTTTATTCTTTTTCAGTTGTTGGGTTTGGACGAGA
TCCGTGGAATGCCCGGGAAAATTATTAGCCGGTGAACTATCTCTTCTCTC
AGCACTAGCGTCGAATCACTTGTTGAAAAGTCACATGAAATTAAACAGAC
AATCCACTCCATCATCGACTGGTGATAAACCTACGACCACATGTCCTGTC
CTGTGATTGATGGAAAGTAGTTTTAGGATTACAGTTTAGACTCTTTTTAA
TTGGAACCTATCTCATTAATGTGAGATGTGAGATAATTGATGTGAGATAT
GTGCGATATTTGATGTCATTGTTTCGGCGCGCTCGATAATACAGGGTGTC
CGGAAAAAAGTATCGAGTCGTACCACTTCTATAGAAAGTTCTTGTGTGTG
TTTCACTAGATTTTCAATGTTTATCAAAGCTTTTATCATGACACAGAGAG
TCATATTAATTGTCCAGAGACCTTTTTTATGAATAACTTTTACAAAAAAC
AATTCTCAATAACTTTAACGTCATGAAATGTAATTCTTCTTAATCATAAT
ACAGTAGTTCCATTTATATTACCGAGTTTATGTAATTGCACTTTTGAGGA
CGGTAGAGTGACTGAAGCGATTTGGAAAAACCCGCAATTCCGCCCCGCAA
AATCGAGGGCAGTAAAAGTGCTGATTTACCGTCGTCCTCAGCGGGTCAGG
ATCTACTCAAATTAGAACCTTACCGTCTCCGTCGCTGAAAAACACACATA
CATAAACTCGCTATTATACTGAGACGGAACGACGGAAAAGTCGTCTGAGA
CAAAAAGTTTGTAAAATTTGATCTGTGGAGGAGATCCTATATATTGAAAC
ATGAATGGAAAGTATACTCCTCCATAATGCTCGTCTCAGACAAATTAATC
GTCTCAGTATAAATAGAACTATAACGACTGTTGTAAAAACAATTATTGTG
TTGGTATATATTTTCTTACATTTTGTTAAACACACGCAACAACCTTCTAC
TCAGAATCATGTTCGAACTCGATACTTTTTTTCCGGACACCCTGTACAGT
ACTTATTTCTGACGTTATTCAGCCAAATGAGCTTCAACTAAATCTTCTGT
TGTAAAAAATTGAGAGATGTACTATTCCAGAAATGATCTACACAAGAGAG
GTTTCAAAGAGCAAATATTTCTAGATAGAGAGTTCCTACAATTATCAAAA
AATTATGAAATTTATGAATGAGTGTATATTTTTTTTTTGGATTTACATAC
AATTTTATTTTTTATTTGGAAAATTTTTGAAAATATCATTTTTTTATTTA
TCTAAGCCATCATGTATGTTGGAAAGACTGGACTGGATGTGTCGCTAAAC
ATCTTTGTGCTCGACTCAATGGCAATAGAAAAGTAATTGTCATGATTATG
CTTGTGAGCTTGACCCTTGGAAAGACAAAATTGCTAAAAAAGTGACCCTT
AGAGAGACATTTTCACAAAAATTTCGTCGATTATCAAAAGAATTCCCCAA
AACATTCGGTTGAACTCATGTAATTCGAACTCCTATAATTCGAACAGATT
CTGTGGTCCCCTCAGAATTTACCTCGAAACCCTTACAAGAAAACTCCTAT
AATTCGAACCCATGTAATTCGAAAAATCACGTAAATCGAACAGATTTTCC
GGTCCCATCTAGAAATTTTGATCGTGTAATTCGAATTTTCGAATTTTCGA
TTTTTTTGAGTTTTTGAAGCTGACAAACTCGACATTTTGTCAATCCAACG
TTTTGACGTTCGAATAATTGTTTGCCAATAGAATGTTTTCTTTTTTTATA
TTCGATTGGAGCTCGTCCACTGCTTTTGCCTTCTATTCTTCCATTTCTTA
TCAAGACAAGATGGGAAAAAGAAAACATAACGAGAAGTCACTTTAAAAAG
GAAATATGAAGCTCTCCGTGATTTGGAGGATAGTATGTCCAATAAAGACG
CAAAAGTAAAATTGGGAAAGACTTTTTTCATCGAATTAGGTCAAAAATAC
GAAAACTCATCTAGTTCGAAACTCGTGTAATTCGAACAAAATTCTCGGTC
CCTTGAGAATTCGAATTACATAAGTTCAACTGCGCTGATTTTTGCAACCC
TTAAGTTAAAGAGACTTTGAAAGGTTTAAAACCCGACCCTTACCGTCCGG
ACATACCCAGCATTCATTTTTTGCCTAAGACCATCTCCCCCCCCCTCTTC
CGGGGTTAGCTTTTTGAACATTGTCTTCGTTCTTCCTTATGTTTAAATTT
TCAATTCTTCTTTTTATTTGGTTTTTCATTACTTTGTCACGTGAAGGTGT
TGAAATTCTACTCTTTTGTTTTTCTTTTTTGATCAGAGTGTAAAAAGAAG
CCGATTTACTTTCCAATAAAAACATTGGCTATTTCAATCACTTTTTTATA
AGAACCACCTAGTCAAACAGCCAAAGCTATTTGCATGAATATTCATGCTA
TTTATTGTAAGAATTTCTAGGAAACACTCCGGTTTTTGCACCATAGTAGT
GGTGAATCTTAAACAATATTTCTGTAGTCTGCGCGCATCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016150XLOC_016150Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028502-exon-sc0000683-1575043694:69219..69494TCONS_00028502-exon-sc0000683-1575043694:69219..69494Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1575043694:68633..68744TCONS_00028502-exon-sc0000683-1575043694:68633..68744Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1575043694:67820..67901TCONS_00028502-exon-sc0000683-1575043694:67820..67901Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1575043694:67036..67194TCONS_00028502-exon-sc0000683-1575043694:67036..67194Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1575043694:66273..66430TCONS_00028502-exon-sc0000683-1575043694:66273..66430Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1575043694:65421..65526TCONS_00028502-exon-sc0000683-1575043694:65421..65526Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1575043694:64773..64879TCONS_00028502-exon-sc0000683-1575043694:64773..64879Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1575043694:64425..64488TCONS_00028502-exon-sc0000683-1575043694:64425..64488Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1575043694:61553..64063TCONS_00028502-exon-sc0000683-1575043694:61553..64063Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1510915933:69219..69494TCONS_00028502-exon-sc0000683-1510915933:69219..69494Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1510915933:68633..68744TCONS_00028502-exon-sc0000683-1510915933:68633..68744Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1510915933:67820..67901TCONS_00028502-exon-sc0000683-1510915933:67820..67901Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1510915933:67036..67194TCONS_00028502-exon-sc0000683-1510915933:67036..67194Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1510915933:66273..66430TCONS_00028502-exon-sc0000683-1510915933:66273..66430Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1510915933:65421..65526TCONS_00028502-exon-sc0000683-1510915933:65421..65526Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1510915933:64773..64879TCONS_00028502-exon-sc0000683-1510915933:64773..64879Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1510915933:64425..64488TCONS_00028502-exon-sc0000683-1510915933:64425..64488Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1510915933:61553..64063TCONS_00028502-exon-sc0000683-1510915933:61553..64063Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1491911889:69219..69494TCONS_00028502-exon-sc0000683-1491911889:69219..69494Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1491911889:68633..68744TCONS_00028502-exon-sc0000683-1491911889:68633..68744Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1491911889:67820..67901TCONS_00028502-exon-sc0000683-1491911889:67820..67901Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1491911889:67036..67194TCONS_00028502-exon-sc0000683-1491911889:67036..67194Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1491911889:66273..66430TCONS_00028502-exon-sc0000683-1491911889:66273..66430Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1491911889:65421..65526TCONS_00028502-exon-sc0000683-1491911889:65421..65526Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1491911889:64773..64879TCONS_00028502-exon-sc0000683-1491911889:64773..64879Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1491911889:64425..64488TCONS_00028502-exon-sc0000683-1491911889:64425..64488Clytia hemisphaericaexon
TCONS_00028502-exon-sc0000683-1491911889:61553..64063TCONS_00028502-exon-sc0000683-1491911889:61553..64063Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000683supercontigsc0000683:61553..69494 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.3195	3.5067	1.45876	0.83503	4.89533	4.53747	4.4659	6.55022	4.78097	4.21559	7.13082	5.45351	9.90327	9.15066	4.85419	4.40293	2.93159	4.82051	3.85898	3.12933	4.50875	4.70168	6.17363	5.64985	11.4199	12.0934	1.68154	1.94616	3.73468	4.70729
Blast
[Close]
BLAST of TCONS_00028502 vs. Swiss-Prot (Human)
Match: HMDH (3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Homo sapiens GN=HMGCR PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 1.373e-88
Identity = 141/261 (54.02%), Postives = 191/261 (73.18%), Query Frame = 3 
Query:  288 LSNEEILQLCKEKKLALHSLEATLNDHKRAVEIRRSFVTAEIGKEADALDDLPYENYNYEKVYGVCCENVIGYCTIPLGVAGPLLLDNNKFYVPMATTEGCLVASTNRGCSALRASGGVFSYLIGDGMTRGPVVRMASAREACLVREWIEEQDNFVILSEAFNQSSRFTELQEI*CAMAGKLLFLRFKASTGDAMGMNMVSKGTEHALKYLKIQFPSMEVVSLSGNYCTDKKPSAINWIDGRGKGVICEATIPGEIVRKLL 1070
            LS+ EI+QL   K +  + LE  +  H+R V IRR  ++ ++  E  +L  LPY +YNY  V G CCENVIGY  IP+GVAGPL LD  +F VPMATTEGCLVASTNRGC A+   GG  S ++ DGMTRGPVVR+  A ++  V+ W+E  + F ++ EAF+ +SRF  LQ++  ++AG+ L++RF++ +GDAMGMNM+SKGTE AL  L   FP M+++++SGNYCTDKKP+AINWI+GRGK V+CEA IP ++VR++L
Sbjct:  462 LSDAEIIQLVNAKHIPAYKLETLMETHERGVSIRRQLLSKKL-SEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVL 721
The following BLAST results are available for this feature:
BLAST of TCONS_00028502 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMDH1.373e-8854.023-hydroxy-3-methylglutaryl-coenzyme A reductase OS... [more]
back to top