TCONS_00064378-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064378-protein
Unique NameTCONS_00064378-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064378-protein ID=TCONS_00064378-protein|Name=TCONS_00064378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
MVSIMATQCLQPTNTGSSGRRTRSSRNNSIDSERFTSVDSQQVTCPGTPS
ADNFGTKVATSTPASSASLNENVCRNQPKPQVKRKLDLEHKTILQPQPQQ
PQPQIIYATFKPPTKVTAIKPKPASGPNRRSRPRSMPLPIAPAAPTNTGM
TIQKPLEPITNKPPLKSPHGGERRYETSLGILTKRFVSLLRSSTNGILDL
NNAAEILDVQKRRIYDITNVLEGIGVIEKNSKNNIKWVGAKHLEKTDETN
SPQEEAVIGAKLLTLHQEISDLRLAESRLDELIEDCQGEMKHCSAAKHVN
KHSYVTYQDIRGVQDFNDKTVIAIKAPPETKLEVPDPAESIQIWLKSNNG
PIDVYLXSISSFKKLPFSAIISEKSNNCSFYLKHPTGKDRKIIDGNSSKQ
KYTYLAS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040363XLOC_040363Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064378TCONS_00064378Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003316E2F_WHTH_DNA-bd_dom
IPR011991WHTH_DNA-bd_dom
IPR032198E2F_CC-MB
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0046983protein dimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005667transcription factor complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 265..285
NoneNo IPR availableSUPERFAMILY144074E2F-DP heterodimerization regioncoord: 263..357
IPR003316E2F/DP family, winged-helix DNA-binding domainSMARTSM01372E2F_TDP_2coord: 174..239
e-value: 8.7E-34
score: 128.2
IPR003316E2F/DP family, winged-helix DNA-binding domainPFAMPF02319E2F_TDPcoord: 176..239
e-value: 7.8E-24
score: 83.4
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 168..242
e-value: 3.7E-25
score: 87.4
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 174..238
IPR032198E2F transcription factor, CC-MB domainPFAMPF16421E2F_CC-MBcoord: 265..356
e-value: 2.5E-30
score: 104.6
IPR032198E2F transcription factor, CC-MB domainCDDcd14660E2F_DDcoord: 260..356
e-value: 8.01946E-43
score: 146.124

Blast
[Close]
BLAST of TCONS_00064378-protein vs. Swiss-Prot (Human)
Match: E2F2 (Transcription factor E2F2 OS=Homo sapiens GN=E2F2 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.057e-60
Identity = 111/219 (50.68%), Postives = 142/219 (64.84%), Query Frame = 0 
Query:  139 PIAPAAPTNTGMTIQKPLEPITNKPPLKSPHGGERRYETSLGILTKRFVSLLRSSTNGILDLNNAAEILDVQKRRIYDITNVLEGIGVIEKNSKNNIKWVGAKHLEKTDETNSPQEEAVIGAKLLTLHQEISDLRLAESRLDELIEDCQGEMKHCSAAKHVNKHSYVTYQDIRGVQDFNDKTVIAIKAPPETKLEVPDPAE-SIQIWLKSNNGPIDVYL 356
            P+ P  PT  G  I+    P    P  KSP G + RY+TSLG+LTK+F+ LL  S +G+LDLN AAE+LDVQKRRIYDITNVLEGI +I K +KNNI+WVG    E        Q+          L QE+ +L   E  LD+LI+ C    KH +  K   + +YVTYQDIR V +F ++TVIA+KAPP+T+LEVPD  E ++QI+LKS  GPI+VYL
Sbjct:   97 PVVPEFPTPKGKCIRVDGLPSPKTP--KSP-GEKTRYDTSLGLLTKKFIYLLSESEDGVLDLNWAAEVLDVQKRRIYDITNVLEGIQLIRKKAKNNIQWVGRGMFEDPTRPGKQQQ----------LGQELKELMNTEQALDQLIQSCSLSFKHLTEDKANKRLAYVTYQDIRAVGNFKEQTVIAVKAPPQTRLEVPDRTEDNLQIYLKSTQGPIEVYL 302
The following BLAST results are available for this feature:
BLAST of TCONS_00064378-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
E2F22.057e-6050.68Transcription factor E2F2 OS=Homo sapiens GN=E2F2 ... [more]
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