TCONS_00059558-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059558-protein
Unique NameTCONS_00059558-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length689

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059558-protein ID=TCONS_00059558-protein|Name=TCONS_00059558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=689bp
MSEDQQNEQNEQNEQNENGSNFPGQNQGPPPMEQRFPGPPPQRPMMPPPM
RPHHDGPPMGMGMRPPHGRFPPPFGQGFPPNQNFPPRMGGPPPFGGPHGP
PGPGPNMPPANTTLPKPPIFDKDGQAWLEACSADGKVYYFNAKTRETKWE
KPDTGEKKDEEKKDDIEEKKETADKEDEPMEEDKQEKQPEPPQQQQQQQQ
QQQQQQQPPKRPNQPPPNMFQRPPRPQMGPPPGMPPPFPMMGGPPGMIPP
GFPPAFNGQGPPRFPPFPSFSPLPPPDFLPKTIGDWTRHRLPDGQIYYYN
NKSKESKWDKPKEFEDNEKEEKKDKKDGNTSDSKDDKKEGSKEGEQKKPV
ASRPISGTIWHLVWTGDGRVFFFSPSTKTSIWERPKELEDNTTIDDLLRM
GPPGKDEESKIDKKPGIVVDVGQEKAEPMDTGSNESKIEEIEPVPKKKKR
NTHEPNDIRTLPILQDNQPPPQQQQQQNQGKGGNNKQQVDPMKEADVKRS
IIPLEERMTMFTQLLREKQVSAFSTWEKELHKILFDPRYLLLTMKERKNC
YEKYVRVRAVEERKERVQKLKEKKEEFKQLLDEVVNSSRLSFSDFASKNS
KDSRYKGIEKMRERENLFNEFMTDFRKHEKERLRAREQKQSRNAIAKLPI
HVFLFNEYYILYMDGSYAPTSSNFSANSTTWTKLQNGVK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037475XLOC_037475Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059558TCONS_00059558Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002713FF_domain
IPR001202WW_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 560..590
NoneNo IPR availableCOILSCoilCoilcoord: 156..176
NoneNo IPR availableGENE3D2.20.70.10coord: 2..135
e-value: 6.7E-7
score: 28.7
NoneNo IPR availableGENE3D2.20.70.10coord: 372..392
e-value: 0.051
score: 12.7
coord: 299..324
e-value: 3.1E-4
score: 19.8
NoneNo IPR availableGENE3D2.20.70.10coord: 231..298
e-value: 6.7E-9
score: 35.0
NoneNo IPR availableGENE3D1.10.10.440coord: 503..568
e-value: 2.0E-12
score: 46.8
NoneNo IPR availableGENE3D1.10.10.440coord: 569..628
e-value: 1.5E-11
score: 43.7
NoneNo IPR availableGENE3D2.20.70.10coord: 136..157
e-value: 2.0E-7
score: 30.3
NoneNo IPR availableGENE3D2.20.70.10coord: 329..371
e-value: 2.4E-5
score: 23.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 422..499
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 139..354
NoneNo IPR availableCDDcd00201WWcoord: 360..387
e-value: 4.73763E-4
score: 37.5074
NoneNo IPR availableCDDcd00201WWcoord: 284..311
e-value: 4.97388E-6
score: 43.2854
NoneNo IPR availableCDDcd00201WWcoord: 127..153
e-value: 1.18208E-5
score: 42.1298
IPR002713FF domainSMARTSM00441FF_2coord: 570..624
e-value: 1.9E-8
score: 44.0
coord: 504..557
e-value: 8.7E-10
score: 48.5
IPR002713FF domainPFAMPF01846FFcoord: 511..554
e-value: 7.1E-9
score: 35.6
coord: 572..621
e-value: 3.6E-8
score: 33.4
IPR002713FF domainPROSITEPS51676FFcoord: 502..557
score: 9.158
IPR002713FF domainPROSITEPS51676FFcoord: 569..624
score: 10.146
IPR002713FF domainSUPERFAMILY81698FF domaincoord: 501..563
IPR002713FF domainSUPERFAMILY81698FF domaincoord: 564..631
IPR001202WW domainSMARTSM00456ww_5coord: 355..387
e-value: 0.014
score: 24.6
coord: 281..313
e-value: 2.6E-5
score: 33.7
coord: 122..154
e-value: 8.4E-5
score: 32.0
IPR001202WW domainPFAMPF00397WWcoord: 126..152
e-value: 2.2E-8
score: 33.9
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 127..154
score: 12.846
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 360..387
score: 11.507
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 280..313
score: 12.373
IPR001202WW domainSUPERFAMILY51045WW domaincoord: 285..316
IPR001202WW domainSUPERFAMILY51045WW domaincoord: 126..154
IPR001202WW domainSUPERFAMILY51045WW domaincoord: 349..387

Blast
[Close]
BLAST of TCONS_00059558-protein vs. Swiss-Prot (Human)
Match: TCRG1 (Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 1.378e-65
Identity = 172/469 (36.67%), Postives = 247/469 (52.67%), Query Frame = 0 
Query:  226 PQMGPP-----PGMPPPFP---MM----------------GGPPGMIPPGFPPAFNGQGPPRFPPFPSFSPLPPPDFLPKTIGDWTRHRLPDGQIYYYNNKSKESKWDKPKEFEDNEKEEKKDKK-------------------------DGNTSDSKDDKKEGSKEGEQKKPVASRPISGTIWHLVWTGDGRVFFFSPSTKTSIWERPKELEDNTTIDDLLRMGPPGKD--EESKIDKKPGIVVDVGQEKAEPMDTGSNESKI-EEI---EPVPKKKKRNTHEPNDIRTLPILQDNQPPPQQQQQQNQGKGGNNKQQVDPMKEADVKRSIIPLEERMTMFTQLLREKQVSAFSTWEKELHKILFDPRYLLLTMKERKNCYEKYVRVRAVEERKERVQKLKEKKEEFKQLLDEVVNSSRLSFSDFASKNSKDSRYKGIEKMRERENLFNEFMTDFRKHEKERLRAREQK 639
            P M PP     PGMP P P   MM                G  PGM PP  P            P  + +  P        + +WT ++  DG+ YYYNN++ ES W+KP+E ++ EK E+K K+                         +      +++  E  K  ++ KPVA+ PI GT W +VWTGD RVFF++P+T+ S+W+RP +L     +D +++  PP K   EE K  + P   +   Q+    M     E ++ EEI   EPV K KKR   +  DI                   +  K    + ++   +E    R+I+PLE RM  F  +L E+ VSAFSTWEKELHKI+FDPRYLLL  KERK  +++YV+ RA EER+E+  K+ + KE+FK++++E   + R +FS+FA+K++KDSR+K IEKM++RE LFNEF+   RK EKE  + R +K
Sbjct:  360 PVMVPPFRVPLPGMPIPLPGVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVP---------MIHPQVAIAASPATLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLEEKIKEPIKEPSEEPLPMETEEEDPKEEPIKEIKEEPKEEEMTEEEKAAQKAKPVATAPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQ-EPPHKKGMEELKKLRHPTPTMLSIQKWQFSMSAIKEEQELMEEINEDEPV-KAKKRKRDDNKDI-------------------DSEKEAAMEAEIKAARE----RAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRGEK 794
The following BLAST results are available for this feature:
BLAST of TCONS_00059558-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TCRG11.378e-6536.67Transcription elongation regulator 1 OS=Homo sapie... [more]
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