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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028053 ID=TCONS_00028053|Name=TCONS_00028053|organism=Clytia hemisphaerica|type=transcript|length=3300bpRun BLAST on NCBI transcript from alignment at sc0000662:22562..46384+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028053 ID=TCONS_00028053|Name=TCONS_00028053|organism=Clytia hemisphaerica|type=transcript|length=23823bp|location=Sequence derived from alignment at sc0000662:22562..46384+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00028053 vs. Swiss-Prot (Human)
Match: RGL1 (Ral guanine nucleotide dissociation stimulator-like 1 OS=Homo sapiens GN=RGL1 PE=1 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 4.254e-77 Identity = 177/476 (37.18%), Postives = 259/476 (54.41%), Query Frame = 2
Query: 230 QWEMVKVKQMKAGTLEKLVEHLTPVSLEVSEFDPGFFLAFLCTYKSFTTTKAVVDLLLKRFEYFETSITEPVKDREG---------VIRR-ICSVARIWIEQYPRDFDEPPEYASLNALIHFAA--------QRRHIPVVEKLWM----LCDGKLNTLTVSPFNDERPLMFKFCSCTSVVGCTCESRNDFIDGYIDSLDIFSFPSELVAIQLTLIDAELFQRVVPRECMASFWGKRDVSKGSK-AQSIKLTVDQFNAVSLKVISTILNAKEKKSKEHTTNARVKAITKWLEIALELRQLKNFSSLKAVISGLQSSAIYRLPRSWELVSKSSHELYQDMQDIFSGELNNKAFRELLVMEGXXXXXXXXXXXXXXXXXXXXXXMKE---GVTHGTVPYLGTFLTDLMMIDTAFPNKIKDDLINFEKRRKEFEIVAQIKLLQQSAKNYRFEADQQFCTWFNSLPTYGDKDGYERSKEVE 1579
Q+E K++ +KAGTLEKLVE+L + D + FL TY+ F +TK V++LLL R+ ++T P + +G VIR I S+ R W++Q DF EPP + L L+ + +RR ++E+ +G NT++ S + +S + F +LVA QLT +DA+LF++VVP C+ W +RD + A +I+ T+ QFN ++ V+STIL KE K+++ R K I KW+ IA E R LKNFSSL+A++S LQS++IYRL ++W V + +++++ DIFS N+ RELL+ EGTSK++ S K + L + GV GTVPYLGTFLTDL M+DTA + I+ LINFEKRR+EFE++AQIKLLQ + +Y DQ+F WF +++ Y S E+E
Sbjct: 60 QYETCKIRTIKAGTLEKLVENLLTA---FGDNDFTYISIFLSTYRGFASTKEVLELLLDRY----GNLTSPNCEEDGSQSSSESKMVIRNAIASILRAWLDQCAEDFREPPHFPCLQKLLDYLTRMMPGSDPERRAQNLLEQFQKQEVETDNGLPNTISFS------------------------LEEEEELEGGESAEFTCFSEDLVAEQLTYMDAQLFKKVVPHHCLGCIWSRRDKKENKHLAPTIRATISQFNTLTKCVVSTILGGKELKTQQ-----RAKIIEKWINIAHECRLLKNFSSLRAIVSALQSNSIYRLKKTWAAVPRDRMLMFEELSDIFSDHNNHLTSRELLMKEGTSKFANLDSSVKENQKRTQRRLQLQKDMGVMQGTVPYLGTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQIKLLQSACNSYCMTPDQKFIQWFQRQQLLTEEESYALSCEIE 499 The following BLAST results are available for this feature:
BLAST of TCONS_00028053 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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