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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027999 ID=TCONS_00027999|Name=TCONS_00027999|organism=Clytia hemisphaerica|type=transcript|length=3137bp
taaatGCCCTTTTTGTGATAAGAAACTAACAGACTTACGAAACCATTTGA
AAAAGGTGCATCAGTATGAACGTAAGAAAACCAAAAACGAAGTAAAGAAA
GATGCGATTTTCCAGTGCCATATCTGCCAGGAGAAGCAGTCAGACTTAAC
GGGACATTTACAATTGGAGCATGATTATTTACGTCATAATGCTAGATTTG
AACAAAAGCAACAGGAATGTATACAACACTGTCAAGCTAAGCATCATGGG
CAACATGTTATACTACCGTGTGATCGTTGCGAGATATGGCTTTGTGAACC
TACCCTTATTCAACATATCAAGAAATCACATCGTATGACGATGATAGGAG
CTGATATTAAAGACTTGATACAGAAATATTGGGCAGGTCACAGAATCACA
GCCAAAAAACTTGACCAGTATGGAAATGTTGTGGTTAGACCATCGAAGTT
AAAAAGAAAAGCTACGGATCTGCTAAACCAATCGAAATTGAAACATAAAA
CTACGACAAcgacaacaaaaacaaaagagcaAACTAAATCTGGTGTTGCT
ACACGTGGGAAACAGTCAAACGAGGTTAGAAAGACATCTGAGAAAGCACA
GAAAACTGCAACTGAAACTCTAGCTGTATCACCAGAAAAATCGCCAGAAG
AGATTGCAAAAATGGCAAAGGAGATTGAGGATATGTCAAATATCAATAAA
ACACTGTTGAACATCGGTCAGAAGACTGACTCTATAAACGAAAGCAGGGA
AACGAGTGATTCAGCAGTTGATATTGACATTATTAGCAAGAATCGTTTAA
AACCTGCAACTGTTAAAATTGAAGTTATTGAGATTATGAGTAGCGATGAG
GATGGTGAGAAGGAGGATAAGGAAACTATCAATACTCGCAAACGAGCAAA
TTTAGATATCGATTCTCTTCCTCAAGatgaagaaattcaaacaaagaaat
caaaaactgaaaaagtaatCGATTCCGTAAATGTGACAAATTCATCCGAA
AGTTCTAAACGTTTTACTGATTTACAAAAGTCTGCATCTAATGAGCAAGA
TGTAAAACAAATTAACCATGAGCCTACGAAATCGAACCAGATAAAAGTTA
CCGAACCTTTAAAGGACGTTTCAAAATCAGCTGACGAACAATCTATAAAT
GCTTCCACTAcctctacaaaaatacccgTACAGCCTTCACAAGCatcaaa
tgtcaaaaacttaACAACTATAAAACTAACATCAGGCAAAGTCGTACAGC
TTGCAAAACGAACTGGAACGGTATTGAAAAAACCTCTAGAACAACCAACG
AACAAAGATTCACATCCTACCAAACCACTAGCTACCAAAGACAAGAAACC
TCCAAATCCACCTAATGCAAGAGTTAAACTATCTACATTAGAATTGAAGT
CGAATGATTCACACACACTAACAGGGCTTTGTTCACTCGATTCCATTCCA
ACTGAACATAGGACAATCCAAAGAACGACTGGAGCAAAATTTCTCTATCA
ATGTCCTCATTGCGAAGGTCAATATTTCTCATTAGCGACTTATTTGATAC
ACCATTTAGCATTTTATCACTATTACGATACTAAGATAGCGACATTTGAA
ACACTCAAACAGCAACAAGTTTATCGTTGTAATGTAAACCATGGTGGGAT
ACACACACCTTTGCCATGTGAGATTTGCAATGTTTGGTTTTGTAATGTTC
GATTTGTTAATCATTATTTAAATGaacataaaatgaaatattgtcAGATA
TATGCTTTGATGAATGAATATTTAGAGTATTATTGGGATGGTATTGCTGT
TGTTGCTAAAGAAATTAAGTTCGGTTCGAAAGAGGTGAAAGATATACAAT
GGAATAAGATTGATTATGCAGCTATTGATGAGAGATTACAAACTCCAGAT
TCACCAGAACCGTTAGATACCGACTCTCTAATAActgaagaagcaaaaaa
gtctGAACCTCTGAATCAGAAAATATCCACTCCATGTGAAATCTCGGAAA
TATCTCAGATAAACGTTCAACAGAAGACCCCCAATCAAATCGAGGCAAAG
ACCGTCAAGCCATCACAATGTAACGTTGATATTTTCCAATCCCCTAAttc
atcagaaaaaaatccACAATATTCACCTACTCAGAGCAAATGTAAACACT
TTGTGGAGAATCCAGATTCAGTAGCTTTAGAACTTTCAAAAGAGAAATCT
TTCCAGCCTGCAAGCGAACCAAAAGCCATGGATCCTCACCAACCCGTCCA
AGAGAAAATCACACTACCAAATAAATATACGGAGTCGTCTACGCCAAATC
CAGTTGATACCAAACTGGTTAAAACCACGCAGCCGTCCCAAATTGAAGAA
CCTCCATCCAAAGCAATAGACGCATCACCAAAACCAATCCACACGAAAGC
TATTCTAACTGCAAGTACAATACCACCGCAGATGAAAACTACTCTTAATG
CAGTACCACCACAGACGAAAGTAGCTCCAGTTACGAAATCATTCCAGACC
AAGACAACTCCAGCTGCAAAACCAACTAAAACCAATGCAACTCCATCTGC
AAAACCAACCAAAACCAATGCAACTACATCTGCAAAACCAACCATAGCTA
ATGCAACTCCAGAAGGAAAACCAACAAAGACGAAAGCAGCTTCGGCTACA
AAGCCATCTCAGCCCAAGGCAACTCAAGCTAAAAAGCCAACGCAGAACAC
TTCAACTActaaaccaaaccaaacaaaagcAAGCCAGACCAAAACTATTC
CATCTGCAAAACCAGTCCAGATAAAAGATACTCTAATAACAAAACCAACC
AAGACGAAAGCTACTCCACCAGAAAAACCATCCATAACGAAGGCAACTCC
AACTGCTGAAACAACCGAGACGAAAACCTCTCCAGCTGTAAAACCATCCG
TAACGAAGGCAACACCAACTGCTAAGCCAACCGAGACGAAAATCTCTCCA
GCTGTAAAACCATCCGTAACGAAGGCAACTCCAGCTGCAAAGCCATCCGT
AACGAAGGCCACTCCAGCTGCGAAAACAACCGAGACGAAAAGCTCTCCAG
CTTTAAAACCATCCGTAACGAAGGCAACTCCAGCTGCGAAACCATCCGTA
ACGAAGGCAACCCCAGCTGCAAAACCATCCGTAACGA Run BLAST on NCBI transcript from alignment at sc0000661:24458..28551+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027999 ID=TCONS_00027999|Name=TCONS_00027999|organism=Clytia hemisphaerica|type=transcript|length=4094bp|location=Sequence derived from alignment at sc0000661:24458..28551+ (Clytia hemisphaerica)
taaatGCCCTTTTTGTGATAAGAAACTAACAGACTTACGAAACCATTTGA
AAAAGGTGCATCAGTATGAACGTAAGAAAACCAAAAACGAAGTAAAGAAA
GATGCGATTTTCCAGTGCCATATCTGCCAGGAGAAGCAGTCAGACTTAAC
GGGACATTTACAATTGGAGCATGATTATTTACGTCATAATGCTAGATTTG
AACAAAAGCAACAGGAATGTATACAACACTGTCAAGCTAAGCATCATGGG
CAACATGTTATACTACCGTGTGATCGTTGCGAGATATGGCTTTGTGAACC
TACCCTTATTCAACATATCAAGAAATCACATCGTATGACGATGATAGGAG
CTGATATTAAAGACTTGATACAGAAATATTGGGCAGGTCACAGAATCACA
GCCAAAAAACTTGACCAGTATGGAAATGTTGTGGTTAGACCATCGAAGTT
AAAAAGAAAAGCTACGGATCTGCTAAACCAATCGAAATTGAAACATAAAA
CTACGACAAcgacaacaaaaacaaaagagcaAACTAAATCTGGTGTTGCT
ACACGTGGGAAACAGTCAAACGAGGTTAGAAAGACATCTGAGAAAGCACA
GAAAACTGCAACTGAAACTCTAGCTGTATCACCAGAAAAATCGCCAGAAG
AGATTGCAAAAATGGCAAAGGAGATTGAGGATATGTCAAATATCAATAAA
ACACTGTTGAACATCGGTCAGAAGACTGACTCTATAAACGAAAGCAGGGA
AACGAGTGATTCAGCAGTTGATATTGACATTATTAGCAAGAATCGTTTAA
AACCTGCAACTGTTAAAATTGAAGTTATTGAGATTATGAGTAGCGATGAG
GATGGTGAGAAGGAGGATAAGGAAACTATCAATACTCGCAAACGAGCAAA
TTTAGATATCGATTCTCTTCCTCAAGatgaagaaattcaaacaaagaaat
caaaaactgaaaaagtaatCGATTCCGTAAATGTGACAAATTCATCCGAA
AGTTCTAAACGTTTTACTGATTTACAAAAGTCTGCATCTAATGAGCAAGA
TGTAAAACAAATTAACCATGAGCCTACGAAATCGAACCAGATAAAAGTTA
CCGAACCTTTAAAGGACGTTTCAAAATCAGCTGACGAACAATCTATAAAT
GCTTCCACTAcctctacaaaaatacccgTACAGCCTTCACAAGCatcaaa
tgtcaaaaacttaACAACTATAAAACTAACATCAGGCAAAGTCGTACAGC
TTGCAAAACGAACTGGAACGGTATTGAAAAAACCTCTAGAACAACCAACG
AACAAAGATTCACATCCTACCAAACCACTAGCTACCAAAGACAAGAAACC
TCCAAATCCACCTAATGCAAGAGTTAAACTATCTACATTAGAATTGAAGT
CGAATGATTCACACACACTAACAGGGCTTTGTTCACTCGATTCCATTCCA
ACTGAACATAGGACAATCCAAAGAACGACTGGAGCAAAATTTCTCTATCA
ATGTCCTCATTGCGAAGGTCAATATTTCTCATTAGCGACTTATTTGATAC
ACCATTTAGCATTTTATCACTATTACGATACTAAGATAGCGACATTTGAA
ACACTCAAACAGCAACAAGTTTATCGTTGTAATGTAAACCATGGTGGGAT
ACACACACCTTTGCCATGTGAGATTTGCAATGTTTGGTTTTGTAATGTTC
GATTTGTTAATCATTATTTAAATGaacataaaatgaaatattgtcAGATA
TATGCTTTGATGAATGAATATTTAGAGTATTATTGGGATGGTATTGCTGT
TGTTGCTAAAGAAATTAAGTTCGGTTCGAAAGAGGTGAAAGATATACAAT
GGAATAAGATTGATTATGCAGCTATTGATGAGAGATTACAAACTCCAGAT
TCACCAGAACCGTTAGATACCGACTCTCTAATAActgaagaagcaaaaaa
gtctGAACCTCTGAATCAGAAAATATCCACTCCATGTGAAATCTCGGAAA
TATCTCAGATAAACGTTCAACAGAAGACCCCCAATCAAATCGAGGCAAAG
ACCGTCAAGCCATCACAATGTAACGTTGATATTTTCCAATCCCCTAAttc
atcagaaaaaaatccACAATATTCACCTACTCAGAGCAAATGTAAACACT
TTGTGGAGAATCCAGATTCAGTAGCTTTAGAACTTTCAAAAGAGAAATCT
TTCCAGCCTGCAAGCGAACCAAAAGCCATGGATCCTCACCAACCCGTCCA
AGAGAAAATCACACTACCAAATAAATATACGGAGTCGTCTACGCCAAATC
CAGTTGATACCAAACTGGTTAAAACCACGCAGCCGTCCCAAATTGAAGAA
CCTCCATCCAAAGCAATAGACGCATCACCAAAACCAATCCACACGAAAGC
TATTCTAACTGCAAGTACAATACCACCGCAGATGAAAACTACTCTTAATG
CAGTACCACCACAGACGAAAGTAGCTCCAGTTACGAAATCATTCCAGACC
AAGACAACTCCAGCTGCAAAACCAACTAAAACCAATGCAACTCCATCTGC
AAAACCAACCAAAACCAATGCAACTACATCTGCAAAACCAACCATAGCTA
ATGCAACTCCAGAAGGAAAACCAACAAAGACGAAAGCAGCTTCGGCTACA
AAGCCATCTCAGCCCAAGGCAACTCAAGCTAAAAAGCCAACGCAGAACAC
TTCAACTActaaaccaaaccaaacaaaagcAAGCCAGACCAAAACTATTC
CATCTGCAAAACCAGTCCAGATAAAAGATACTCTAATAACAAAACCAACC
AAGACGAAAGCTACTCCACCAGAAAAACCATCCATAACGAAGGCAACTCC
AACTGCTGAAACAACCGAGACGAAAACCTCTCCAGCTGTAAAACCATCCG
TAACGAAGGCAACACCAACTGCTAAGCCAACCGAGACGAAAATCTCTCCA
GCTGTAAAACCATCCGTAACGAAGGCAACTCCAGCTGCAAAGCCATCCGT
AACGAAGGCCACTCCAGCTGCGAAAACAACCGAGACGAAAAGCTCTCCAG
CTTTAAAACCATCCGTAACGAAGGCAACTCCAGCTGCGAAACCATCCGTA
ACGAAGGCAACTCCAACAGCGAAATCAACCGAGACGAAAACCGCTCCAGC
TGTAAAACCATCCGTAACGAAGGCAACTTTAGCTGTAAAAACATCCGTAA
CGAAGGCAACTCCAGCTGCAAAGCCATCCGTAACGAAGGCCACTCCAGCT
GCGAAAACAGCCGAGACGAAAAGCTCTCCAGATTTAAAACCATCCGTAAC
GAAGGCAACTCCAGCTGCGAAACCATCCGTAACGAAGGCAACTCCAACAG
CGAAATCAACCGAGACGAAAACCTCTCCAGCTGTAAAACCACCCGGAACG
AAGGCATCTTTAGCTGTAAAAACATCCGTAACGAAGGCAACTCCAGCTGC
AAAGCCATCCGTAACGAAGACCACTCCAGCTGCAAAAACAACCGAAACGA
AGGCAACTCCACCTGCAAAACTATCCGTAACGAAGGCAACTCCACCTGCA
AAACTATCCGTAACGAAGACTGCTCAAGCTGCAAAACTATCCGTAACGAA
GGCAACTCCAGCTGCAAAGCCATCCGTAACGAAGGCAACTCCACCTGCAA
AACTATCCGTAACGAAGGCAACTCTAGCTGCAAAAACAACCGTAACGAAG
GCAACTCCACCTGCAAAACTATCCGTAACGAAGGCAACTCCACCTGCAAA
ACTATCCGTAACGAAGGCAACTCTAGCTGCAAAAACATCCGTAACGAAGG
CAACTCCAGCTGCAAAGCCATCCGTAACGAAGGCCACTCCAGCTGCAAAA
ACAACCGAAACGAAGGCAACTCCACCTGCAAAACCATCCGTAACGAAGGC
CACTCCAGCTGCAAAAACAACCGAAACGAAGGCAACTCCACCTGCAAAAC
CATCCGTAACGAAGGCAACTCCAGCTGCAATAACAACCGTAACGAAGGCA
ACTCCAGCTGCAAAGCCATCCGTAACGAAGGCCACTCCAGCTGCAAAAAC
AACCGAAATGAAGGCAACCCCAGCTGCAAAACCATCCGTAACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027999-exon-sc0000661-1491911889:24458..27563 | TCONS_00027999-exon-sc0000661-1491911889:24458..27563 | Clytia hemisphaerica | exon |
| TCONS_00027999-exon-sc0000661-1510915933:24458..27563 | TCONS_00027999-exon-sc0000661-1510915933:24458..27563 | Clytia hemisphaerica | exon |
| TCONS_00027999-exon-sc0000661-1575043694:24458..27563 | TCONS_00027999-exon-sc0000661-1575043694:24458..27563 | Clytia hemisphaerica | exon |
| TCONS_00027999-exon-sc0000661-1491911889:28521..28551 | TCONS_00027999-exon-sc0000661-1491911889:28521..28551 | Clytia hemisphaerica | exon |
| TCONS_00027999-exon-sc0000661-1510915933:28521..28551 | TCONS_00027999-exon-sc0000661-1510915933:28521..28551 | Clytia hemisphaerica | exon |
| TCONS_00027999-exon-sc0000661-1575043694:28521..28551 | TCONS_00027999-exon-sc0000661-1575043694:28521..28551 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000661 | supercontig | sc0000661:24458..28551 + |
Blast
The following BLAST results are available for this feature:
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