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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027963 ID=TCONS_00027963|Name=TCONS_00027963|organism=Clytia hemisphaerica|type=transcript|length=1056bp
GGAAGTTTTATAATTATTGTGTCAATGAGGATGAACTCAAACAATGGGGA
GAATTTTTACATGGATTGGGAATATTCGCAAATCCTATCCATTCTCAACC
CTTGTTTAATTTTGTGATGAACTCATTCTTGAGGCAATGCATTTCTGCTT
TGATAGTAATGAATGAGAAGAGCATCAGTCTTGAAGacatcaaattaaat
aaaagcgAAGAAGAAACTCTCTATTACGTTGCTGGATATATTGTATTTTC
CCtgaagaaaaatgtgaaaaataaactgTCCCTCGACAGTAAAGCAACAA
TTTCTCTTTAGGAGACATGGGGCTGTAAAGGAGACAACGAGTTTGGAGAT
ATAACAATTGAGGAATATACTCGTGCTTGGTTGGAGAAGGTTAACCGTGG
TGGTTTGTTCCATGTTAACCaccaattttttgattttattgttgCTATTG
AAAAAACTGCAAGGacaattttaaatatttccttgtTTTCCACATACTCT
GGAGAAAATTTGAAGGAAGTGCTTCAAAAGAAGTTTGAAGACAATATTGC
GATCCAAAATGCTTGGAAGCAGCTATCAAGCAGTATGACATCTGAtattt
taaaaagcaaattgtTCAATAAACTATTAGGAAAATGGATAAATCTCAGA
GCATACGCCTTTGTCAAAGTTTGGATGCAACAATTTAAAATGGACCAAAG
GAGATTGGGAGAAGAGGTGGCCGAACAAGGAGAACCTGCACTGAGGAAAG
GCCTCAAGAAAAAAACAGCTAGAAAGGTCGATAGAACTTTGATATCTCCA
AAGACTTCTAGTAAAGTCAAGACAGCCAAAGATAAAACATTGAAATCCAG
TGTTGCTGCGTCTAAACTCAAGAAAGCAAAGAAcactttaaaaaacaaaa
agtaaattaattttgattttttcttcctttttttgtaaacagctaatttt
ggcaatttttaatGTATAATATCTTAGGAGATTTTTATTATCTAAGCtga
cttgaaaataaattctcttttgtttttgaattaggACATTATTACCAACA
TGCTCA Run BLAST on NCBI protein sequence of TCONS_00027963-protein >TCONS_00027963-protein ID=TCONS_00027963-protein|Name=TCONS_00027963-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MTSDILKSKLFNKLLGKWINLRAYAFVKVWMQQFKMDQRRLGEEVAEQGE
PALRKGLKKKTARKVDRTLISPKTSSKVKTAKDKTLKSSVAASKLKKAKN
TLKNKK Run BLAST on NCBI transcript from alignment at sc0000658:183163..184218 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027963 ID=TCONS_00027963|Name=TCONS_00027963|organism=Clytia hemisphaerica|type=transcript|length=1056bp|location=Sequence derived from alignment at sc0000658:183163..184218 (Clytia hemisphaerica)
TGAGCATGTTGGTAATAATGTcctaattcaaaaacaaaagagaatttatt
ttcaagtcaGCTTAGATAATAAAAATCTCCTAAGATATTATACattaaaa
attgccaaaattagctgtttacaaaaaaaggaagaaaaaatcaaaattaa
tttactttttgttttttaaagtgTTCTTTGCTTTCTTGAGTTTAGACGCA
GCAACACTGGATTTCAATGTTTTATCTTTGGCTGTCTTGACTTTACTAGA
AGTCTTTGGAGATATCAAAGTTCTATCGACCTTTCTAGCTGTTTTTTTCT
TGAGGCCTTTCCTCAGTGCAGGTTCTCCTTGTTCGGCCACCTCTTCTCCC
AATCTCCTTTGGTCCATTTTAAATTGTTGCATCCAAACTTTGACAAAGGC
GTATGCTCTGAGATTTATCCATTTTCCTAATAGTTTATTGAacaatttgc
tttttaaaataTCAGATGTCATACTGCTTGATAGCTGCTTCCAAGCATTT
TGGATCGCAATATTGTCTTCAAACTTCTTTTGAAGCACTTCCTTCAAATT
TTCTCCAGAGTATGTGGAAAacaaggaaatatttaaaattgtCCTTGCAG
TTTTTTCAATAGcaacaataaaatcaaaaaattggtGGTTAACATGGAAC
AAACCACCACGGTTAACCTTCTCCAACCAAGCACGAGTATATTCCTCAAT
TGTTATATCTCCAAACTCGTTGTCTCCTTTACAGCCCCATGTCTCCTAAA
GAGAAATTGTTGCTTTACTGTCGAGGGAcagtttatttttcacatttttc
ttcaGGGAAAATACAATATATCCAGCAACGTAATAGAGAGTTTCTTCTTc
gcttttatttaatttgatgtCTTCAAGACTGATGCTCTTCTCATTCATTA
CTATCAAAGCAGAAATGCATTGCCTCAAGAATGAGTTCATCACAAAATTA
AACAAGGGTTGAGAATGGATAGGATTTGCGAATATTCCCAATCCATGTAA
AAATTCTCCCCATTGTTTGAGTTCATCCTCATTGACACAATAATTATAAA
ACTTCC Coding sequence (CDS) from alignment at sc0000658:183163..184218 >TCONS_00027963 ID=TCONS_00027963|Name=TCONS_00027963|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0000658:183163..184218 (Clytia hemisphaerica)
ttactttttgttttttaaagtgTTCTTTGCTTTCTTGAGTTTAGACGCAG
CAACACTGGATTTCAATGTTTTATCTTTGGCTGTCTTGACTTTACTAGAA
GTCTTTGGAGATATCAAAGTTCTATCGACCTTTCTAGCTGTTTTTTTCTT
GAGGCCTTTCCTCAGTGCAGGTTCTCCTTGTTCGGCCACCTCTTCTCCCA
ATCTCCTTTGGTCCATTTTAAATTGTTGCATCCAAACTTTGACAAAGGCG
TATGCTCTGAGATTTATCCATTTTCCTAATAGTTTATTGAacaatttgct
ttttaaaataTCAGATGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027963-exon-sc0000658-1491911889:183163..184218 | TCONS_00027963-exon-sc0000658-1491911889:183163..184218 | Clytia hemisphaerica | exon |
| TCONS_00027963-exon-sc0000658-1510915933:183163..184218 | TCONS_00027963-exon-sc0000658-1510915933:183163..184218 | Clytia hemisphaerica | exon |
| TCONS_00027963-exon-sc0000658-1575043694:183163..184218 | TCONS_00027963-exon-sc0000658-1575043694:183163..184218 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000658 | supercontig | sc0000658:183163..184218 . |
Blast
The following BLAST results are available for this feature:
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