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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027944 ID=TCONS_00027944|Name=TCONS_00027944|organism=Clytia hemisphaerica|type=transcript|length=436bp
TTCAAAGGCAAGCATATCATGGGAGATATTTCATTGGGAATGATGTTCAT
AAGATGTTGAAAGAAGTAAACATCAAGAAGTTATGTAACAGTATCCCCAT
GTTAGTATATGAAGAATTTGGTTTGGTAGATACTCACGCACATAGACAGG
CATGGGACATCAGGAAACGATACAAAGAACTGATGGACAACTATGGCGTT
TGTCACCGCCTGATGAATTCATCAGATTACTTTGACGATGAAAAGATTCA
CAAATTAGATTCATCAATGAAGACGTTTTTTGACCATTATCGAGAAAATT
TCAAGCAGTCAATAACAATAAAGCTTCATTTGCTGGAGTGTCATGTCctc
aaattcatcaaaaaatggCGAATCGGCATGGGGATGTATGGTGAACAGGG
TGCAGAAAGCTTTCGTCCAGAGTTCAACAATCTGAG Run BLAST on NCBI protein sequence of TCONS_00027944-protein >TCONS_00027944-protein ID=TCONS_00027944-protein|Name=TCONS_00027944-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
QRQAYHGRYFIGNDVHKMLKEVNIKKLCNSIPMLVYEEFGLVDTHAHRQA
WDIRKRYKELMDNYGVCHRLMNSSDYFDDEKIHKLDSSMKTFFDHYRENF
KQSITIKLHLLECHVLKFIKKWRIGMGMYGEQGAESFRPEFNNL Run BLAST on NCBI transcript from alignment at sc0000658:126763..127535- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027944 ID=TCONS_00027944|Name=TCONS_00027944|organism=Clytia hemisphaerica|type=transcript|length=773bp|location=Sequence derived from alignment at sc0000658:126763..127535- (Clytia hemisphaerica)
TTCAAAGGCAAGCATATCATGGGAGATATTTCATTGGGAATGATGTTCAT
AAGATGTTGAAAGTAAGTTTTTTTCTCCAAAATTTAAAATAACTGACAAA
TTCATTCAAAATTCAAAACTTTTCATGAAAATATATGTTTTTGTAAGAAG
TAAAAAAAATTCTTAAAAATAGTTCTCTTCTCCATTTCTTTAGGAAGTAA
ACATCAAGAAGTTATGTAACAGTATCCCCATGTTAGTATATGAAGAATTT
GGTTTGGTAGATACTCACGCACATAGACAGGCATGGGACATCAGGAAACG
ATACAAAGAACTGATGGACAACTATGGCGTTTGTCACCGCCTGATGAATT
CATCAGATTACTTTGACGATGAAAAGATTCACAAATTAGGTATATCTTAT
CAAATTTAATCTTTGGTCTACCTAGGTTTTTTAGGAAAAAAACCCCTTTG
CAGCTAAAATACTGGATTATAAAAGACTTCTCGCCAAATTTGCTGCTCGT
CAAAATTGTTTCAGCAAAATTCTTCATCATAAAAATAAACATTAAAGGTT
AAACGCCATAACTCACCAGGATAGTGTTTATGTTCTTTTCCTCAGATTCA
TCAATGAAGACGTTTTTTGACCATTATCGAGAAAATTTCAAGCAGTCAAT
AACAATAAAGCTTCATTTGCTGGAGTGTCATGTCCTCAAATTCATCAAAA
AATGGCGAATCGGCATGGGGATGTATGGTGAACAGGGTGCAGAAAGCTTT
CGTCCAGAGTTCAACAATCTGAG Coding sequence (CDS) from alignment at sc0000658:126763..127535- >TCONS_00027944 ID=TCONS_00027944|Name=TCONS_00027944|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at sc0000658:126763..127535- (Clytia hemisphaerica)
ATTCATCAATGAAGACGTTTTTTGACCATTATCGAGAAAATTTCAAGCAG
TCAATAACAATAAAGCTTCATTTGCTGGAGTGTCATGTCCTCAAATTCAT
CAAAAAATGGCGAATCGGCATGGGGATGTATGGTGAACAGGGTGCAGAAA
GCTTTCGTCCAGAGTTCAACAATCTGGAAGTAAACATCAAGAAGTTATGT
AACAGTATCCCCATGTTAGTATATGAAGAATTTGGTTTGGTAGATACTCA
CGCACATAGACAGGCATGGGACATCAGGAAACGATACAAAGAACTGATGG
ACAACTATGGCGTTTGTCACCGCCTGATGAATTCATCAGATTACTTTGAC
GATGAAAAGATTCACAAATTAGCAAAGGCAAGCATATCATGGGAGATATT
TCATTGGGAATGATGTTCATAAGATGTTGAAAATTCATCAATGAAGACGT
TTTTTGACCATTATCGAGAAAATTTCAAGCAGTCAATAACAATAAAGCTT
CATTTGCTGGAGTGTCATGTCCTCAAATTCATCAAAAAATGGCGAATCGG
CATGGGGATGTATGGTGAACAGGGTGCAGAAAGCTTTCGTCCAGAGTTCA
ACAATCTGGAAGTAAACATCAAGAAGTTATGTAACAGTATCCCCATGTTA
GTATATGAAGAATTTGGTTTGGTAGATACTCACGCACATAGACAGGCATG
GGACATCAGGAAACGATACAAAGAACTGATGGACAACTATGGCGTTTGTC
ACCGCCTGATGAATTCATCAGATTACTTTGACGATGAAAAGATTCACAAA
TTAGCAAAGGCAAGCATATCATGGGAGATATTTCATTGGGAATGATGTTC
ATAAGATGTTGAAAATTCATCAATGAAGACGTTTTTTGACCATTATCGAG
AAAATTTCAAGCAGTCAATAACAATAAAGCTTCATTTGCTGGAGTGTCAT
GTCCTCAAATTCATCAAAAAATGGCGAATCGGCATGGGGATGTATGGTGA
ACAGGGTGCAGAAAGCTTTCGTCCAGAGTTCAACAATCTGGAAGTAAACA
TCAAGAAGTTATGTAACAGTATCCCCATGTTAGTATATGAAGAATTTGGT
TTGGTAGATACTCACGCACATAGACAGGCATGGGACATCAGGAAACGATA
CAAAGAACTGATGGACAACTATGGCGTTTGTCACCGCCTGATGAATTCAT
CAGATTACTTTGACGATGAAAAGATTCACAAATTAGCAAAGGCAAGCATA
TCATGGGAGATATTTCATTGGGAATGATGTTCATAAGATGTTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027944-exon-sc0000658-1575043694:127474..127535 | TCONS_00027944-exon-sc0000658-1575043694:127474..127535 | Clytia hemisphaerica | exon |
| TCONS_00027944-exon-sc0000658-1575043694:127147..127342 | TCONS_00027944-exon-sc0000658-1575043694:127147..127342 | Clytia hemisphaerica | exon |
| TCONS_00027944-exon-sc0000658-1575043694:126763..126940 | TCONS_00027944-exon-sc0000658-1575043694:126763..126940 | Clytia hemisphaerica | exon |
| TCONS_00027944-exon-sc0000658-1510915933:127474..127535 | TCONS_00027944-exon-sc0000658-1510915933:127474..127535 | Clytia hemisphaerica | exon |
| TCONS_00027944-exon-sc0000658-1510915933:127147..127342 | TCONS_00027944-exon-sc0000658-1510915933:127147..127342 | Clytia hemisphaerica | exon |
| TCONS_00027944-exon-sc0000658-1510915933:126763..126940 | TCONS_00027944-exon-sc0000658-1510915933:126763..126940 | Clytia hemisphaerica | exon |
| TCONS_00027944-exon-sc0000658-1491911889:127474..127535 | TCONS_00027944-exon-sc0000658-1491911889:127474..127535 | Clytia hemisphaerica | exon |
| TCONS_00027944-exon-sc0000658-1491911889:127147..127342 | TCONS_00027944-exon-sc0000658-1491911889:127147..127342 | Clytia hemisphaerica | exon |
| TCONS_00027944-exon-sc0000658-1491911889:126763..126940 | TCONS_00027944-exon-sc0000658-1491911889:126763..126940 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000658 | supercontig | sc0000658:126763..127535 - |
Blast
The following BLAST results are available for this feature:
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