TCONS_00027930 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00027930
Unique Name	TCONS_00027930
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1049

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000657:71139..76678-

transcript sequence

>TCONS_00027930 ID=TCONS_00027930|Name=TCONS_00027930|organism=Clytia hemisphaerica|type=transcript|length=1049bp
AGGGTACCAACAAAGTGGCTATTAAGATAATGCCCAAACGAAACGAAGCC
GAGATTTCAAACGAATTCAAGGCAATGAGAAGAGCTAAAGGCTCTGCAAA
TATTGTCGAAATTTACGGCAAATTCAATGGTATCGAAAATACCTATCTTA
TCATGGAATTCTGTCATGGTGGCGATTTGACCAATCATTTGGAAACCGTT
TACAAAGATTCTCCATATCTTAGTGAATCCAAAGCTAAAGAATACTTCAG
GAGTATTGCAACAGGAGTCAAATATTGCCATGATCATGGCATCGCTCATC
GCGATCTCAAATTTGAGAACGTCTTAGTTGACCGATATGGAGTTGTAAAG
CTTGCAgATTTCGGATCGGCCGAATTTCCCGATCACTATCCCGATGGTCT
CCTAGACACATTTATCGGCACACCTTCGTACATGGCCCCCGAAGTCGTAC
TCGGCTACCTCGATAAAGGCCAAGCGTATGATGGTTACAAGGCAGATAGC
TGGAGTGTTGGAATCATCCTGTTCAAATTGTTGACAGGCAAACAACCCTA
CGCACCGTTGCCATGGCAACTACTCTACAATTTGATTCAAAAGAAGACTT
TCAAACAACGTCTTCCAGCGGATGTAAACCTAACCCCAGAATGTATCAAC
CTTCTTGGAAGACTTTTAGACAGAGATGCGAAAAGCAGAGCATCACTTCA
AGAAATATTGGAACATCCGTGGTTGAAGTTGGAAGAGgtcgatgagaaaa
agaaaaatgttccagTAAAGTTGATGGATGAAAAAAGGCCCTTGCAGGTC
CAAAAGCAATCGCAAGACGTTCGGGCAAAAAACGGAAATAACGCATTAAA
TACTCTAATTGTCGTCAAAGGAAAAATCGTCCACAGAGATGAGAGAAAAC
CATTCAGACGAGCATTCTATCCTAATGGCCATCATTTCACTCCACAAGAA
TGGTGGGAATGACTCATCATAACCACACCGTCAACAGCAACAATAAAACC
CACAATGCAACAAAATCCACATAACTCCAAATCAATCTATCAATCCCtc

Run BLAST on NCBI

transcript from alignment at sc0000657:71139..76678-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00027930 ID=TCONS_00027930|Name=TCONS_00027930|organism=Clytia hemisphaerica|type=transcript|length=5540bp|location=Sequence derived from alignment at sc0000657:71139..76678- (Clytia hemisphaerica)
AGGGTACCAACAAAGTAAGTTTAAATCTTTTCATACAGTTTTTCTAATAA
ATGATTTTGCGTTACTTGCAGAATTAAATTCTTACCAAGTAAGAATTTTT
TAAGATTTTTACTCCTCTTAAAAATATTTTTATTGACTATTTATTATTTT
ACAGATTATTTATTTGTGCTGTAATTAGAAAAAAACATCATTAGCGTGAG
GATCTTTAGTTTCTATGGATAACTTACTTCGTCTTTTTTTAAGGTGGCTA
TTAAGATAATGCCCAAACGAAACGAAGCCGAGATTTCAAACGAATTCAAG
GCAATGAGAAGAGCTAAAGGCTCTGCAAATATTGTAAGTATAGCCTTTAT
ATTACATATTATCATTTTTTTATGTTTTGAAGGTTAAGCTTCAGTACGTT
TATCATAATGTTTCTGTAGTGGAAACCACAATCATACACTAAATATTTGA
GATAAAGGGGAGTTCCCGGTGTAATTTTGAACACCACGATTGATTTTTAA
GCGCATTAGTTTTAACTCTGAGTTTTAACATGAGACTTAAGACTTACGAC
CTTAGGATCTCAGGATTTAAAAGCTCAAATTTGCTCGAATGAGGCTTGGA
ATATAGCCTAGAAGCCACCAAACCCCTCTAAAATCGAAATATTCAATGGA
AGAAAGTGGAAGTGCTAAAATAGCAATTCTCGCCCGAACTTTAATTTCTG
AAAAACGTTAAAATACACTAAAATCTCAATATATTTCGAGGGTGATTGCA
GGTTGGGGTTTACTTATGCAACGGATATACACGTTTTTTTATAAGAACAA
ACTATATAAGAACGGCTTCGATGGCCAAATTATTAAGAAAAAGTTAAAAA
CATTTTAAGGCTTCGTGGGCTCGCTCTAAAAAGCTTGATTTCTTAGGAAA
TTGCACAAAAATACTCACAAAATGGTGAAGCTAAGAACATCCTGAGAACA
TTTTTAGGCTCAAAACTCAAAAAGTTAGGAGAATCCTTAGGCTTCAAAAA
TTTTGGATATTCTTATAAAAAAACGTGTACCTTTTTCACCACCATGAGTT
CAAAATAACCAAAATAAAAATAGCTCTCTTTTTTGGAAATTTGGGAAGAT
GGCAATTTCTTTGAGATTAGTTATATAATGAAATTAATCCCCATTCGCAA
ATTTATGTGCCGAGTAGAGTCCATTTTTCGAAGCTCAGCAGGACCCTGTC
GATCAGCAAGGAGAGTAACTCCCATCATCATGGCGTTCTTATTTTACAAG
CCTAGTGAAATTTAAGCTACTGCACACGTGCTAGGCCTGGATAAATAAAT
AGGTTACCCTGGAAGCTGAGTCGAGCCTTTTTCATTAATGATAAATCTAT
ACTTTTATACATAGGTCGAAATTTACGGCAAATTCAATGGTATCGAAAAT
ACCTATCTTATCATGGAATTCTGTCATGGTGGCGATTTGACCAATCATTT
GGAAACCGTTTACAAAGATTCTCCATATCTTAGTGAATCCAAAGCTAAAG
AATACTTCAGGAGTATTGCAACAGGAGTCAAATATTGCCATGATCATGGC
ATCGCTCATCGGTGAGTTACTTTATAGTTAGCAGAGTTCATCAAATAACT
TCCGTCAGTACAAAAATTCAGCTGTACTCGCTCAAAAGTATTTTGTATTT
TTTACGTAGTATAAGTGATTTAAACATAAAACGAATTCGCGCAGTAGTTA
CACCAATCGGTCCTATTAAAATACTTTATCCAATGGTATTTTGACTTACC
TTGTCTATCCAGACAATTGTGAGTTATAGGTATAGTTATATGAAATATGT
TCTAAGACTTCAAACAGCACAAGCCTACGATTACAGTAATTTTAAATATC
ATTTTCTTTCCCGATTCTATTTTAGCGATCTCAAATTTGAGAACGTCTTA
GTTGACCGATATGGAGTTGTAAAGCTTGCAGGTAAAATTCTTTTAAAACT
TCGTTCTTTTCGAAATTTTGGTTATCTATCGATCCNCTTGCAGGTAAAAA
TCTTTAAAAACTTAACTACATTCTGTTCGAAATTTTGGTTATCTATCGAT
CCATCGAATGAGCTATTCCATATTAAAAACACCTCCGTATGTTAAGAATT
TCAAGCTTTCACAGAATTTTTGGCTTTTCCACGAATGAAAAATATGATCT
GAAGGGTTAATTTTTTTCTGGAATGGCCAATTACGTCGTTTACACAATTT
TCACCACAAGCATTCACATATTCCGTTTCTATACGTTTTAGATTTCGGAT
CGGCCGAATTTCCCGATCACTATCCCGATGGTCTCCTAGACACATTTATC
GGCACACCTTCGTACATGGCCCCCGAAGTCGTACTCGGCTACCTCGATAA
AGGCCAAGCGTATGATGGTTACAAGGCAGATAGCTGGAGTGTGTAAGTTG
TCCAAAGTTCGTCTTTTCATAAGTACGCTAAGTTTATGCAAGTAAAACAC
TTATCATAGCACTCATTCTGAAAAATAAAATGAGATTTTGTCTAGTATAC
CGACCGACTGCCTAACGATCTGCCCGTAGAACAACAAATTAAATTTGTCT
CGCCTAAAAGAGGATTTCAATATTGAAAATCCTGGAATACATATTACAAA
CTATTTTAAATTACACTATTGATATTACTGGACTTTCATATTCGATTTTG
CTAAGCTTGTAGGTTTAGAACGCCATGATTCTGGGAGAAACTCTCCTTGT
TGACCGACAGGGTCCTGCTATCTTATGGATGTTACTATATTGCATGGTAT
TATTTTTCTCCTTCCAGTGGAATCATCCTGTTCAAATTGTTGACAGGCAA
ACAACCCTACGCACCGTTGCCATGGCAACTACTCTACAATTTGATTCAAA
AGAAGACTTTCAAACAACGTCTTCCAGCGGATGTAAACCTAACCCCAGGT
AATTTGCGATTCGATTTTAGTAGAGGCAGATCAGCTTATAAAATTTAAAT
ATCCTGCCCTGGATTTGCGTCTGCATTTAACCGATCGGAATCACCTGAAA
AGGCCGGTAATTTGACCACTGTTATGCTATTTTAGTCAAATTCAAACTTT
TTTCGAGTATTGCCGATAGAAAAAAAGAAGTAATTTTTATGAAAAAACCT
AAATTTTCCTCTTCGTCGGTAAAATCGCTTACATTTCCTAATTCGCCGTA
CCAGAATTAAAAAGCTTCCGTCGTGCCTGCGTATAAACAAGAAAAGACAG
CTCAAAGATTTCTTCTCAATAGACGATAAGATTGACAAAGACTTTCAATC
CAAGAGCAAATAATTTCTGGAAGTTCCCATTGTCTTTAAAAAATCTTCTT
TTTTTTATGACTTTTTTTTTCTCAATTTTATTCACCGGCTAGTTGGTTGT
CTGTACACAGACCCGATAACTACGGCTAATTTCAAAATTCATTGTCTTAG
AGACGATAAACGTGAGATACACTCTGGTACAGAGTAGCTAGTTGGGAAGA
CATATCTAAATAACCATTATATTCTCTTACCTCTTGAATAGAATGTATCA
ACCTTCTTGGAAGACTTTTAGACAGAGATGCGAAAAGCAGAGCATCACTT
CAAGAAATATTGGAACATCCGTGGTTGAAGTTGGAAGAGGTAAAGAAGGT
AATCTATGGGGGCGTACGGGCTTTGCGATTTCCGAAATACCGAATAATTT
AGCCAAAATTTCCGAAATTTCATAAAAAAATACTTGCAATTCCGATATAC
CGATTTGTTGGGTATTTTTCCTCGTTTTGACTAATTTTCCATCAAATTTG
ATTTTTCATGTATGAATTCAGAAAAAGGGTGACAAAAACTTTATAATACC
GAAATTTAGAAGCAAAAATTCATGGATTTCTGATACCGAAACAATTTAAG
AATTCCAAAATACCGAAAGAATTTTCTCCGATTTCCGACATTCTGAAGAA
AAAAGGTTCGATTTCCGCAATTCCGAAATACCGTACGCCCCCACATCTAT
AAACTCTGATTTTCTAGTGATACCTTGAAAAAATGTTCTCGTTAGTTTTC
AAAAGCCGAGATGTTGAGATGTTCAATTAATTACTACAGTTAGGTATCTT
ATTTTCCACTTAAGTACGAAAACAATTAATGAGCCTTGTAAGGAATCACT
GTTTCAATTGCCGTAACTACTACCAAAATACTACTTTTTACTCAACACTG
TAGAAGAGAATTTTACAGGTGAAAACTCTCAAAGAATCTGATTATCCCTT
TACATTTTTTTTATTAGAACAAACATTATAAGAACATAAGACTTCGATGG
CCAAAATGTTAAGTACAAGTTAAGAACATTTTAAGGCTTCGTTGACTCTA
AAANGAACAAACATTATAAGAACATAAGACTTCGATGGCCAAAATGTTAA
GAACAAGTTAAGAACATTTTAAGGCTTCGTGGACTCTAAAAAACTAAATT
TCTTAGGAGAATGGACAAAAATACTAAAAAATAGCGAAAATAAGAACATG
ATAAGAACGTTTTTAGGCTTAAAACTCAGCCTCACTTACAAGGATTTTAT
TGTTTTGTTTTTCATACCTCACAATTTTTACACAACTTCAAATTAGAAAA
AACTTCATTTTTTAGGTCGATGAGAAAAAGAAAAATGTTCCAGTAAAGTT
GATGGATGAAAAAAGGCCCTTGCAGGTAAGTAAAGTTAACTTTTATTCAT
TTTTTACACATTTTTTTTTACACATTTTACCCCAATTTTCGACTCAAGGC
TGGACTTGCCAAGGATTTATATTCGCCACAAAAAAACCTCGCCTCACTTT
GCCTATTATTATTTGTTAAAGTGCTTGAATTTACTTTTACATTTCAGGTC
CAAAAGCAATCGCAAGACGTTCGGGCAAAAAACGGAAATAACGCATTAAA
TACTCTAATTGTCGTCAAAGGAAAAATGTAAGAAGGAACATATTTATTTG
GACTCCGATTCTGCACTAGATATTTTTTTCCCAGGAAAATCACGTGATAT
ACTTTTAACCAATAAAATTTGATAATTTCGAGAGGAAAGTGAACACTAAA
ACACTTTCAAAACCAATGAGATATATAGGGCTAAAAAGGAATTCTCGACC
ACTCCTAGGCAAGGGGAAGTCAATAATATTTGCGCTGAAGTTCGGATAAC
AGATTGATTCTAAGTTTTTCTTTGTTTTTCTTGCGTGGCATGTTTTTAAA
AATTTGTTGGTAATGTTACTTTTTATCTACAGTGGAATTCGTGTGAAAAC
CACGCGGGCCAAGAAAACTTATGTTTGAAGCCTACATAGGATATTCGGTT
CCAGCTCTCGGCTATATTAATACAGGTGGTTCTGAAATAGCATGAAAGCA
ATTTAAGGATTATTGACATACTAGATGAGGCAATTAAATGAAACTCGTTC
TTTTCATTCTCATTTTAGCGTCCACAGAGATGAGAGAAAACCATTCAGAC
GAGCATTCTATCCTAATGGCCATCATTTCACTCCACAAGAATGGTGGGAA
TGACTCATCATAACCACACCGTCAACAGCAACAATAAAACCCACAATGCA
ACAAAATCCACATAACTCCAAATCAATCTATCAATCCCTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_015793	XLOC_015793	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000657	supercontig	sc0000657:71139..76678 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.155839	0	0	0	0.0787542	0.259299	0.134268	0	0	0	0	0	0	0	0	0	0	0.0381014	0	0	0	0	0	0.0616286	0	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00027930 vs. Swiss-Prot (Human)
Match: SNRK (SNF-related serine/threonine-protein kinase OS=Homo sapiens GN=SNRK PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 4.558e-35
Identity = 92/260 (35.38%), Postives = 138/260 (53.08%), Query Frame = 3

Query:   12 KVAIKIMPKRN-----EAEISNEFKAMRRAKGSANIVEIYGKFNGIENTYLIMEFCHGGDLTNHLETVYKDSPYLSESKAKEYFRSIATGVKYCHDHGIAHRDLKFENVL-VDRYGVVKLADFGSAEFPDHY-PDGLLDTFIGTPSYMAPEVVLGYLDKGQAYDGYKADSWSVGIILFKLLTGKQPYAPLPWQLLYNLIQKKTFKQRLPADVNLTPECINLLGRLLDRDAKSRASLQEILEHPWLK-LEEVDEKKKNVPV 767
            KVA+K++ K          +  E + M+  +   NIV +Y   +     YLI+E   GGD+ ++   + K    L+E  AK+YF  I   + YCH   + HRDLK ENV+  ++ G+VKL DFG   F + + P   L T  G+ +Y APE++L     G  YD    D WS+G+ILF L+ G+ P+          +I     K  +P+ V  + EC +L+ R+L RD K RASL+EI  HPWL+ ++     K N+P+
Sbjct:   41 KVAVKVIDKTKLDTLATGHLFQEVRCMKLVQ-HPNIVRLYEVIDTQTKLYLILELGDGGDMFDY---IMKHEEGLNEDLAKKYFAQIVHAISYCHKLHVVHRDLKPENVVFFEKQGLVKLTDFG---FSNKFQPGKKLTTSCGSLAYSAPEILL-----GDEYDAPAVDIWSLGVILFMLVCGQPPFQEANDSETLTMIMD--CKYTVPSHV--SKECKDLITRMLQRDPKRRASLEEIENHPWLQGVDPSPATKYNIPL 284

The following BLAST results are available for this feature:

BLAST of TCONS_00027930 vs. Swiss-Prot (Human)

BLAST of TCONS_00027930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SNRK	4.558e-35	35.38	SNF-related serine/threonine-protein kinase OS=Hom...	[more]

You are here

TCONS_00027930 (transcript) - C. hemisphaerica