TCONS_00049223-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049223-protein
Unique NameTCONS_00049223-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length215

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049223-protein ID=TCONS_00049223-protein|Name=TCONS_00049223-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
PIRRVQCIFLVFQDKMYGKPSNHQTLRQLSNEHCVQDVEEAQPTAEWTVH
PANMKFRTKDEGLNHGHLKGEGNAQYPQFAVTNPTPNTLFMASVCMLVTD
EDGHYIHPHAVVDKKTKTEVGARCFCVPPHSTTTVDIKDLAIRRILQKYF
RYFIKKLTDENDNLYTAEDIYQVYDFKHSIESQLDLDNLPKEAHKGYKQG
GKQGKENKSEFHRFV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031257XLOC_031257Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049223TCONS_00049223Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011539RHD_DNA_bind_dom
IPR008967p53-like_TF_DNA-bd
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011539Rel homology domain (RHD), DNA-binding domainGENE3D2.60.40.340coord: 33..210
e-value: 1.1E-8
score: 34.6
IPR011539Rel homology domain (RHD), DNA-binding domainPFAMPF00554RHD_DNA_bindcoord: 53..157
e-value: 2.1E-6
score: 27.7
IPR011539Rel homology domain (RHD), DNA-binding domainPROSITEPS50254REL_2coord: 40..151
score: 11.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 192..215
IPR008967p53-like transcription factor, DNA-bindingSUPERFAMILY49417p53-like transcription factorscoord: 48..176

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049223-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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