TCONS_00027833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027833
Unique NameTCONS_00027833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length119

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027833 ID=TCONS_00027833|Name=TCONS_00027833|organism=Clytia hemisphaerica|type=transcript|length=119bp
ACCTCCTGTACCACACAGACCACATTTGGCTTTGCATCTCATTTTCATGA
TTGCATTTGAACACATGGAAGTTGGGAAGAATCGACAATTCCTTGATGCA
TCAGAACATGTTGctagaa
Run BLAST on NCBI

transcript from alignment at sc0000647:56266..59319-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027833 ID=TCONS_00027833|Name=TCONS_00027833|organism=Clytia hemisphaerica|type=transcript|length=3054bp|location=Sequence derived from alignment at sc0000647:56266..59319- (Clytia hemisphaerica)
ACCTCCTGTACCACACAGACCACATTTGGCTTTGCATCTCATTTTCATGA
TTGCATTTGAACACATAGAAGTTGGGAAGAATCGACAATTCCTTGATGCA
TCAGAACATGTTGCTAGAAAATATTAAAAAAGATGAGTTTCATACTTGTC
ACGTTAAAAAAAGAATACACCTTTTCGACCGTAGCCGCCAATTTCCACAC
GGGCATTTTTTTGTCCGTTTTACCACCCTAAACTCGATCAAATCCTTCTT
AAACTTAGTAATAAAAGAATTATTAAGAATAAACTTACTCTCGGGTACCT
AATAGCCGGGGTGGGTGGAAAAATACTCAAATCTTAATAAGCTGAGGGGG
ATTGGAATAAAAATGACCTGGGTGGGAAATTTTTGAATAGGAAGCTAATA
CATCAGAATTAGGGCAAAAGAGGGAACTTTCAAAAACATTTTCCCAAAAA
ACAATAAGCAGAGGAGGTTGGAATTAGAATGTCGTGGGTGGGAAATTTTC
GAAAAATTAGTTAGCGGGGGACGCTTATTAGGTACCCGAGAGTTTAGACG
TTATGGAGCAAAAGATAAAATTTCATTAAAAGCTAAGAACAAATTGAAAA
CTTGAGTTACTGTAGAAGCTTTAGGAACTACTTTAATGTATACAGCTTTG
CCATGCATGCCTTTAAGTAAAAAGTGTAAGCAGTTCTAAAAAGAAATTTG
TTCCAACCTGATTGAAAATTTGCAAACCTTTTATAGAAAATAGCAGCTGC
CTAGGTTAAGAAAATATCGACATGTTTTTATAAAAAATAAGTATATTTAT
ATACTTTGTTCCATTGAGCTTAAAGCGCCTGTAAGGCTAGAGAGGAATCT
GTAACCTTTCCAACGGATGCCTTAAGATCTTCGTCGCATTTGGATTTTTG
AACCTAGCGTGTGTTTTATTTTTTTATATTACGTCGTGCATTTCTCGTTT
TATCTTACTTAATACAGCGCTTGTTGAAAACCAATTTGGTCACTCGTTTT
GGATGGGAAATGGGAGACTTGCCTTGTTTGCCATCTAAGAAAATTCCTCT
CTTAGCCTCTTCAGGCTTAAAGTTAAAAAAAAACATACCTGAAACTGTTG
CGATGAAGGCAATCGTCAAGAAAATTAATTTCATCATTTTGGTTGTCAGT
TGTCTTGTCCTTGGAAAAGCTTCGTTGGTAAGATATTTGCTGAGCTGCTG
TCTGGCTACCAGTGGTAGACTTTTTATACGACTAGAATATTTGGACACCT
GCCAGCTGCTTTTAACATTAATTAAGAAAAATCTTTTGCGGAAGAAATAT
ACAACTAATATTTGAGTAACTGCCGTAGCTCAATCTCAGATCCCAGGAAG
TAAATTAAGCCGAAAATTAATTAATTTATTGGCGTCTTTCTGTCACATGG
ATATTACAATAAATATAAAACATAAAAAAATATTGAAAATTGTATTACTA
AGATGCCAGATTTCATTTCCCCAGGAATTTAATGAAAGCTTTTATATTTT
GGATTTGTTTGCTCACCTTTTTTCACTTCAATTTTGGAAAATATTTTTAT
GCCGGCGGAATGGGAGAAGCGAGATTTTAAGGATTATAACAAAGTAATAT
CTAAAGTCAACACTGACGACGGTGTGGTTGTATTCTCCACTACATAATTA
ACAGGGGGTTTCATGGTTGGCGCAGGAGCGAAATCGGCCCTTTTTTGGGA
CGGAGTGGTGGAATTTGACGAAGATTTAGGCGGTATTTCGGAAATTGGTT
CCTCTGACGGAGACGGAAAATTTAAAAACTTTTAGAGCGAAAAAGCGAAA
TTTAGTAGAAAAAGTTTTGACAGAATTTGGGAAAAATTTGGCGGAATTGC
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCACAGAAAAGGCGCGAAAAAGAATTGCCGTCTGCTTAAAAAT
CGCTAGCGAAAAAGCTTCATGCGAGAATTGGAGAGTTCCGATTTTAGCGT
ATTATAATATAGATGAGTAAGCAAACGATATCACTCTTACTTAAAAATAA
AACCTTTAAGAACAATTCAATTTCGTCCCAAAGGAACAACCTTAGCCTCA
AATTTCAGAAGCTGTCTCGAATACCATTTTTAAGCCTCAAAATCACAAAA
CAATAATTAATTTTGATTAAAATTGTTTCTTTATTACCTCCTGTACCACA
CAGACCACATTTGGCTTTGCATCTCATTTTCATGATTGTATTTGAACACA
TGGAAGTTGGGAAGAATCGACAATTCCTTGATGCATCAGAACATGTTGCT
AGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015727XLOC_015727Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027833-exon-sc0000647-1575043694:59256..59319TCONS_00027833-exon-sc0000647-1575043694:59256..59319Clytia hemisphaericaexon
TCONS_00027833-exon-sc0000647-1575043694:56266..56320TCONS_00027833-exon-sc0000647-1575043694:56266..56320Clytia hemisphaericaexon
TCONS_00027833-exon-sc0000647-1510915933:59256..59319TCONS_00027833-exon-sc0000647-1510915933:59256..59319Clytia hemisphaericaexon
TCONS_00027833-exon-sc0000647-1510915933:56266..56320TCONS_00027833-exon-sc0000647-1510915933:56266..56320Clytia hemisphaericaexon
TCONS_00027833-exon-sc0000647-1491911889:59256..59319TCONS_00027833-exon-sc0000647-1491911889:59256..59319Clytia hemisphaericaexon
TCONS_00027833-exon-sc0000647-1491911889:56266..56320TCONS_00027833-exon-sc0000647-1491911889:56266..56320Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000647supercontigsc0000647:56266..59319 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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