TCONS_00027851 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027851
Unique NameTCONS_00027851
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027851 ID=TCONS_00027851|Name=TCONS_00027851|organism=Clytia hemisphaerica|type=transcript|length=305bp
CTNTTATcggacttgcagaaagcggactgcggAAAGTTATGAGAAATGGt
ttctagattttttaatgAAGTATATATACCAATAccatcaagttacacaa
catggcCACTATCTGGCAAATGTGTTTTTCTAGAGTGTACGGTTTGTGAC
TACTGTAGCTTAAAATTGTTAATGGCGACCAGTTACAATTTCTGGTAGGA
GATGCAGAGAATTGTGACAACAAGGCtcaaaataacaatttcaagtgggt
cggacaaaatgtccaatcagggttgctttagcttgaaaattatgattttt
gtgtN
Run BLAST on NCBI

transcript from alignment at sc0000647:43457..43761

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027851 ID=TCONS_00027851|Name=TCONS_00027851|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at sc0000647:43457..43761 (Clytia hemisphaerica)
Nacacaaaaatcataattttcaagctaaagcaaccctgattggacatttt
gtccgacccacttgaaattgttattttgaGCCTTGTTGTCACAATTCTCT
GCATCTCCTACCAGAAATTGTAACTGGTCGCCATTAACAATTTTAAGCTA
CAGTAGTCACAAACCGTACACTCTAGAAAAACACATTTGCCAGATAGTGg
ccatgttgtgtaacttgatggTATTGGTATATATACTTcattaaaaaatc
tagaaaCCATTTCTCATAACTTTccgcagtccgctttctgcaagtccgAT
AANAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015740XLOC_015740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027851-exon-sc0000647-1491911889:43457..43761TCONS_00027851-exon-sc0000647-1491911889:43457..43761Clytia hemisphaericaexon
TCONS_00027851-exon-sc0000647-1510915933:43457..43761TCONS_00027851-exon-sc0000647-1510915933:43457..43761Clytia hemisphaericaexon
TCONS_00027851-exon-sc0000647-1575043694:43457..43761TCONS_00027851-exon-sc0000647-1575043694:43457..43761Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000647supercontigsc0000647:43457..43761 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.84635	1.44038	2.15021	2.07029	1.99192	3.93511	0.485052	3.55567	2.17823	1.92721	1.12236	0.245931	2.21031	1.78533	2.34254	3.37534	3.0493	3.97783	2.37534	1.2323	1.42812	1.59066	0.430827	1.55446	0.792937	2.47687	1.01906	0	0.819721	1.67033
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027851 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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