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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027814 ID=TCONS_00027814|Name=TCONS_00027814|organism=Clytia hemisphaerica|type=transcript|length=648bp
GAAAcatttcttattttcttgttatgAACTAATTAATGTCTTAATGATGG
CAATCAGTAACCGAGTGAAGTTATGAATCAATTATGAAGCTTGCTAAAAA
CAGTATCATATCGACTATTCTCTTGACTTTCTGAACACAAGCAGCAAGTA
GTTGTCGTTTTAAAGAAAGCTTGAAAGAATTCCTTGATGAGAATACGAAA
GCGGACAGCAACCACTTCGAGCGTGGATACAGATGATGTGTCGTATGATC
TGTTCATAGCGACCACCATGGTGGTGCCGTCGAAAGGACCAGCCTACATC
TTACTAAAAGACACAGTTGGCCTTAAAAGAGCCAAACGTCGTATCGGTGT
ACGATTTGGTTCGCAAACCATCTTCACTGCGCATGCAGGAGCCATCTACC
TTGCCAACAAAGATGATAAACAACCTCAAGACAAAACCATGATTTCCTTG
GTCTCGCTCACCGACACAAAACGTATTTTGGTCACAGCAAAGGAGAACAC
ACGCATGTTGACCACGGCTGAGCTGAATATGATGCTTCCAATCACGTCTG
ACCAAAGACgcgcaaaaattttatcaactTCAGTCTTTATGGAAGCGATT
ACGGCGCAAATTGATGACGTTGTTGCTGTCAACGATGGTGAACATCAN Run BLAST on NCBI transcript from alignment at sc0000646:162233..171461- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027814 ID=TCONS_00027814|Name=TCONS_00027814|organism=Clytia hemisphaerica|type=transcript|length=9229bp|location=Sequence derived from alignment at sc0000646:162233..171461- (Clytia hemisphaerica)
GAAACATTTCTTATTTTCTTGTTATGAACTAATTAATGTCTTAATGATGG
CAATCAGTAACCGAGTGAAGTTATGAATCAATTATGAAGCTTGCTAAAAA
CAGTATCATATCGACTATTCTCTTGACTTTCTGAACACAAGCAGCAAGTA
GTTGTCGTTTTAAAGAAAGCTTGAAAGAATTCCTTGATGAGAATACGAAA
GCGGACAGCAACCACTTCGAGCGTGGATACAGATGATGTGTCGTATGATC
TGTTCATAGGTAATGACTTATACTCATTCTCGAATGTCATCAAAAAAGAG
TTAAGCATCTTAAAATTCTATTTAAGCTGGCTTAATTAACATTATTTCCT
GTTTAAAATAGAGATAAAGGGTTCATTTTTTACGATATACCATGCCTGTC
TGTGGTAATTACGAGAGTCGTTGTTAAATGGGAGTAGCAGAATCAAGACA
CATCCTGGAATTTTTTTGCTACCCTTCTTAACAGGGAATTCAGATCTGAG
AAAAAGCAAATTTACCCCAATGAAATTCTTGTGATAGGACTGCATATCTG
ATCTATAATTTTCAAAAAAATTGGGATGAAAAGTTGGTCAAAAGCCACCA
TTTTCAGGATTTTGAGACAAAGAAGCTTTTCCAAAATGTTCCGAAATTCT
ATTGTTACAGTAGTTTGGTTAAAAATACACCATCTAGTGCAAAGAAAAAT
TCTAAATCTTTTTTCTTCTCCGAAAATAAGCTCCTCAAAGGTGAAATACT
TATCTTCGCAAAAGTCTTCATTTTCTTTATAAACAATTTTTTTCGTTGCA
ATTTTTAAATTTTCAGATTCAGAAATACACCTTTTCGACCGTAGCCGCCA
TATACTTCACGGGCAATTTTTCTGCTTTATCCCACTAAAACCGTCCCAGT
CCTTTTTGTCGCACCTAACCAATAGAAAAATGTTTCAAAAAAGGATTGAG
TTGAGTAGGGGGATGATTAAATAATTAAGTGGTACACGTCTGACCGCGCG
ACTACGGTCGAAAAGGTGTATAGTTTGCCTAACAGTTTTGTTGGTTACAT
CAGCCAGAAAATACACGACAATTATAAAAAATTCACAATGGTCAGAGCCC
TTAACCTTATCTGCCTGTTTGTTCAGCGGTAGCGGCAAAACTGCTAAAAT
CTCAAAATCATAAAATGGCCTGCTTAAAAGATTTCCCTGCAACTATCTAT
ACCAAGTGGTCTGTTTTTCAGGACAGGCAAATAGCCGATTTCAAATTTTT
TGCCGCCATTTTGAAAAATTTTGAGTATGGAGGGAATGTATTTTAGCCAA
TCATGATTCTTAAATATTTATCTCAATTTTATAAATTTTCACGTTNATGG
CCTGCTTAAAAGATTTCCCTGCAACTATCTATACCAAGTGGTCTGTTTTT
CAGGACAGGCAAATAGCCGATTTCAAATTTTTTGCCGCTATTTTGAAAAA
TTTTGAGTATGGAGGGAATGTATTTTAGCCAATCATGATTCTTAAATATT
TATCTCAATTTTATAAATTTTCACGTCTTTTTTCTTCAAAAATTTACCTA
ACAGTGACCCTTTTTGGATCCCATTTTGTCAAAAAAAATTCCCTGGTGGG
GTTAGGTAAGGTGGCCAACCCCCCCAGAAAAATTGAGCAAAAAGGTCAAA
GCTTTCCCGATAGAATGTGAAGGTACCTGCAGTTTTTGCGACTTTTTCTG
GCTACCTTTGCCCTTTTCAAGGCCTCCTTTAAGCTTTTTGACATTAGACC
AAAATTAGAAGAAAGCTTTCTGTGACATGAAATTCCGTGCCTTCTGTACT
TTTTGTGAGCTTATTCTCTCTAACCTTGACCTAGCCTGGGAATCCAAGCG
TTAAACTTTATTCACAGTTTATGATATTTTTGTTGCTTGTTTAACGCTTG
GCGCAGGTAACTCGCCTGCAGGGAGATTTTTCCCTGCAATGCAGGTTCGG
CCTGGTTGGCCAGCTTTCGGCGTATTATCTAGCAGTATTTTCGCGCGCAT
TTTGATGATTTCGATGTGCGCGCATAATTTATGGAAAAAGCTGACTCTGC
AGAAAAAAGGAAAACAAATGAAAATGAAAACTATATTTATTTCGAAACAA
AATGGCTGTTGGCTGGAAGTCTAACTTCATGTGGCTGATGTTTTGATGTG
GTTTTTAGTATTTTTGAAAGTCTTTAGAGCTTGTAAAAGATTTTTTATGG
TAAGTTAATTATGTGAGTTGGCCTGGATTTCAAAGTTTAGAAAGTCTGTC
AACAAGGGTTCACACACAGACTGTTTATAACATTCTGTGTCAGACTAATC
TACCTGCACCAAGCTCTATAATCTTAGAACTTAGTGANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT
TTTTGTATAGAATTTTTGACTGAAGATCGTGACGAAAAGTTGCGTGAAAC
TTTGAGTATCAAACAATTCTTATCTCAACTTCAATTTATTGTGTATATTA
ATTTTATAAACAAAAACTTTTTTTCTTTCATATAGCCTTGTACCTCTGGC
GATATCCCTTCTTGGTGTCTAGCGGGGGGATAAGGCTATTATTTTTTGTC
AGTAGTGTTTCGTCTTATTTTTTCGTTAGTGTACCGTGTAACCTATATTA
TAAAGAAAAAAATGCATTTGCGGGGCATTCATAGCGACAGCTGCTTGCTA
GTATATAGATTGGTCCGATTTGCCATATCCCAAAGTGGAATACATGAACT
GTGATTTAGTTTTAGTTTAAAGTTTTGTTTTGCTGCTATTTGTTAAATTA
TCAGAAATTAAAATTCAGTCAGAAGTGGACTTTAATCTACAGATGCTAAA
TGATTAAGCTGAATTTTACATATTCGTCATTATTCAAAACTTAATGGATT
GTTATGAAACATTTCTTATTTTCTTGTTATGAACTAATTAATGTCTTAAT
GATGGCAATCAGTAACCGAGTGAAGTTATGAATCAATTATGAAGCTTGCT
AAAAACAGTATCATATCGACTATTCTCTTGACTTTCTGAACACAAGCAGC
AAGTAGTTGTCGTTTTAAAGAAAGCTTGAAAGAATTCCTTGATGAGAATA
CGAAAGCGGACAGCAACCACTTCGAGCGTGGATACAGATGATGTGTCGTA
TGATCTGTTCATAGGTAATGACTTATACTCATTCTCGAATGTCATCAAAA
AAGAGTTAAGCATCTTAAAATTCTATTTAAGCTGGCTTAATTAACATTAT
TTCCTGTTTAAAATAGAGATAAAGGGTTCATTTTTTACGATATACCATGC
CTGTCTGTGGTAATTACGAGAGTCGTTGTTAAATGGGAGTAGCAGAATCA
AGACACATCCTGGAATTTTTTTGCTACCCTACTTAACAGGGAATTCAGAT
CTGAGAAAAAGCAAATTTACCCCAATGAAATTCTTGTGATAGGACTGCAT
ATCTGATCTATAATTTTCAAAAAAATTGGGATGAAAAGTTGGTCAAAAGC
CACCATTTTCAGGATTTTGAGACAAAGAAGCTTTTCCAAAATGTTCCGAA
ATTCTATTGTTACAGTAGTTTGGTTAAAAATACACCATCTAGTGCAAAGA
AAAATTCTAAATCTTTTTTCTTCTCCGAAAATAAGCTCCTCAAAGGTGAA
ATACTTATCTTCGCAAAAGTCTTCATTTTCTTTATAAACAATTTTTTTCG
TTGCAATTTTTAAATTTTCAGATTCAGAAATACACCTTTTCGACCGTAGC
CGCCATATACTTCACGGGCAATTTTTCTGCTTTATCCCACTAAAACCGTC
CCAGTCCTTTTTGTCGCACCTAACCAATAGAAAAATGTTTCAAAAAAGGA
TTGAGTTGAGTAGGGGGTGATTAAATAATTAAGTGGTACACGTCTGACCG
CGCGACTACGGTCGAAAAGGTGTATAGTTTGCCTAACAGTTTTGTTGGTT
ACATCAGCCAGAAAATACACGACAATTATAAAAAATTCACAATGGTCAGA
GCCCTTAACCTTATCTGCCTGTTTGTTCAGCGGTAGCGGCAAAACTGCTA
AAATCTCAAAATCATAAAATGGCCTGCTTAAAAGATTTCCCTGCAACTAT
CTATACCAAGTGGTCTGTTTTTCAGGACAGGCAAATAGCCGATTTCAAAT
TTTTTGCCGCCATTTTGAAAAATTTTGAGTATGGAGGGAATGTATTTTAG
CCAATCATGATTCTTAAATATTTATCTCAATTTTATAAATTTTCACGTTT
TTTTTCTTCAAAAATTTACCTAACAGTGACCCTTTTTGGATCCCATTTTG
TCAAAAAAAATTCCCTGGTGGGGTTAGGTAAGGTGGCCAACCCCCCAGAA
AAATTGAGCAAAAAGGTCAAAGCTTTCCCGATAGAATGTGAAGGTACCTG
CAGTTTTTGCGACTTTTTCTGGCTACCTTTGCCCTTTTCAAGGCCTCCTT
TAAGCTTTTTGACATTAGACCAAAATTAGAAGAAAGCTTTCTGTGACATG
AAATTCCGTGCCTTCTGTACTTTTTGTGAGCTTATTCTCTCTAACCTTGA
CCTAGCCTGGGAATCCAAGCGTTAAACTTTATTCACAGTTTATGATATTT
TTGTTGCTTGTTTAACGCTTGGCGCAGGTAACTCGCCTGCAGGGAGATTT
TTCCCTGCAATGCAGGTTCGGCCTGGTTGGCCAGCTTTCGGCGTATTATC
TAGCAGTATTTTCGCGCGCATTTTGATGATTTCGATGTGCGCGCATAATT
TATGGAAAAAGCTGACTCTGCAGAAAAAAGGAAAACAAATGAAAATGAAA
ACTATATTTATTTCGAAACAAAATGGCTGTTGGCTGGAAGTCTAACTTCA
TGTGGCTGATGTTTTGATGTGGTTTTTAGTATTTTTGAAAGTCTTTAAGA
GCTTGTAAAAGATTTTTTATGGTAAGTTAATTATGTGAGTTGGCCTGGAT
TTCAAAGTTTAGAAAGTCTGTCAACAAGGGTTCACACACAGACTGTTTAT
AACATTCTGTGTCAGACTAATCTACCTGCACCAAGCTCTATAATCTTAGA
ACTTAGTGAGGTGAGGTATTTTTTGTTTTTTCTAAGATTATGAGCTTGGA
TTCCCAGGCTAACCTTGACCTTCTCAAGCTCTTATTTAAGCTATTTGAGC
TTGCTTAGAGCAAAACTTTTTTTTCAAGCTGGCCTCTGGCAGCTGCTATA
ATTGTAGCTTTTCAAATCGTTTTGAGAGGTCAAAGAAGACCATTTATAGG
TGGCCTATATTAGGAGGGGTACCAAAAATATATTGACTGGTTAGAGGGGG
ACTTGAAATTCTTTTGAGGATATCAAGGGGTGTGCGAATCTTTTTTGGAA
TCGTTGAAAATATCCTCCACCCCAGATACTTTCTAACACTCCCTAAATTG
GAAATTTTTCAATTTCTTTTCTGACAGGGTACCAAATTCACCAAATATTC
ATATCTGACAGGGTCCATTTTTCAAACATCAGCGGTACGTCCCCGTGACT
GATCAATTGGCCAAATAATTGCTTTTCTCATAAAGAATTTTTTACGTCAA
TTCAATTTCTGACCTGGAAAGCATGCATAAATGAATTGGGTTTTCCATAA
ACTGCACTCATCTTTTTCAGTAGAATTTTAGGTACTAACTTACAAAAAGT
TCTTTATTGGCGCTAGGATTACCGGAAACGACTTGCAAAAATGTCACCTT
AAAATTATCCGAAATGGTCTTCTTTCGGCCTTATTTCCTGCCATCAGTTG
CCCATCAAAAACATATTGAACGACCACGAATACATTTTCAAAACCGTCAT
TTCACTCAATTTTCTTGATAGAAATAAGAAGAAATCGTTAAATCGCTTTC
TCTCCTCTTCAGCAAACGTACTACGCAGGAGAACCATCTCAACCAAATCA
TAATAGTCGTTTGAGTCTCCCAACGAAATACTCTTCCTTGGTCTGCCTTT
AGAATTGTGCCACATTTCAGAATACGGATTGAATTTTGTGAAAATGTGTC
TGTATGAAAATGAGCTAAAACCTTTTCTTTCTTGAAGTGTTTTTTTCTCA
ATTTCGATTTATTTTAAATTCAAACTTCTCCCATTTCTGAGCTTAAAACA
GTTTGAATTTCTATTACAGTAAGTAGTGCAGTGAAAGAGGTTTGACCTTA
ATTACAACCTGGAGCGGATTTTCTGCGGTTCTCCACAAATTTTGCGAAAA
TATTTTTGCATAATACTTTTTAAAGAGGGGTTATATAATGTAAATCTGTG
GTAATCTACGTCAGCCGATAATTATCTTGAATAAAGCCAATCAAGTCAAA
GCAAACAAAACTGATAAAAATTAGCTTTGATTTGAGAACTAATATATTTG
ATTTGTCTGCGATTTAATTTCTAAAAATAGATGTAAACTTCCCCAATATC
AAAATTATTCTTCTGCTTTAAATTGCTTTATTTCAAAGGAAGAACATATC
CATCGGTAAACTAAAAAAAAAATTACCAAAAATCTTGGCATTCGCAGTTA
AACTTTAGACCGGCATAACATTCGAAAGCAGCTGACGAGGCGACCTTTTT
TTCGGATGTGTTCTGAGAGTAGTTTAAGTTAGATTTTTTATTTGTTCTGA
TCATCAGAGTTTAGAAAATTAATCAGCTGGAAAATAATTATGTGTTCTGA
CGAGACAGGCGTATAGTTAACGTCATCTAACGTGTTCTCGTTGTCTAGGT
AACCCTAGAAAGCTCAATACCCATCTTTCAAGTACAGGGGCATAATCTAA
AGAATCTTAAGATTCGTTTATAATCTACAACTGACTCTCGTTTTCCCTCC
CGAACTCGAACGGAGAATTAAATTATATTATTATATTATAGAAATTATTG
ACAGGCACTGAAAAATAGTTCGAAAGTCTGCTGTAATGAAAAGTATTAAA
CGTAAAGTCTTATAAGAAATTCCAAGGAAATTAGTACTTAGCTCTCAGAA
TCTTTTGTGTCTATATTTTTAATTCTTTGCCTGGTCCATCATTTTGATGC
AGATTTCCTGCAAACTGCTGCGCAATATTCTCGGTGTTTTTAACTGATCA
ACTGGACGAGTGTAATCGAATATATTAATTGTGAGGAATACTTAAATTAA
GTTGTCAGGGAATCTCGGGGAAAATTCATTCCAGTGCCTGGCAGAAAAGG
ATTACAACCAATAATTTCCTGTAANGTAATCGAATATATTAATTGTGAGG
AATACTTAAATTAAGTTGTCAGGGAATCTCGGGGAAAATTCATTCCAGTG
CCTGGCAGAAAAGGATTGCAACCAATAATTTCCTGTAATTTAATTCCCCG
GGGGGGGGCACTCAAGGTAAATGACCTACCAGACGTTCGGCCCTTAAGGG
TAGGTTTTTCATAGTTTANTTTAATTCTCAAGAAAGCTTCCAAGAAGCCC
GACAAATATTCTCAAAAAGACCATTACTGAGCAAGTGAAAATCAAGGGAT
TAGAGAAGTAAAAAAAGATAATAAGAGTCGAATACCCAATCTATGCTCTT
AAAATAAGAACATAATAAGAACCATTGGAGCCAAATGATCTTAAAAAAAA
TAAACGACCAAGCGTCAAAAAAGATTTTTTGTTTTTATAGAAAAAGTGAA
TATACAGTTATTTAAGTTTCAGATTAGACATCAGAAGGTTTTTTTTAAAT
GACAAACTGGATCATACAAGGAAATTGTTCCACTGTGCTTTTTTAATTGT
AGACTGTATTTTCTTATACGTAGATTTTCAATGATAGAGCTGCCAATTTT
CATAAATGAACGCCAAAAGAATTAGTGTGGCAATTTCCGCCTGTTAATGG
AATAGTATTAGAGTTTGCTAATTAGTTCATTTTTATCATGAAGAGAAAAT
CAATTTTTATCATTAGCTAATTCATATTGTTACTTACTAGTAGGCCATAA
TGTGTTGACTTTATCAAGCGAAATCTACTTGTTATACTTAAAAAAGGTGT
TTGTTTAGCATTACGGAGAATCAAAGTCACGAAATGGGTTTAGAAGAACT
CGATTTAGGTAATAAATTAATAAATTATTTTTAACTCGGTTAAAACAATC
TCCACTGTTTCGGTTGTTTACGAAACTGTTTTTTTTTGTATTCAAAGCTC
ATTGTAACAAGATGGTGATGTCGAGTGTGGAGTATTTCTTGCACTGAAGT
GTTGAAATTGAGAGTACTGGAGTTTCGTTAGAAGTTTTTTTTAAGATTAA
GGTCAATGCTATGTTCAGAATAGTTTGTCAATTCATGGTTCTAGATTCGC
ATGATGGGAATTATCGTGGGTTTGTGAGCTGTGTGATCTGGAAAGAAAGA
TTCTTTCAAATTTATCTCTATGGCTATTCTTATTGCTTTGTACTTTGTAC
ATTTTCGAAATTGATGATTTTCTATTCTCAATAGACGAGCGGGCGAGGTA
GTGAATTGTGTCACTTCGTAGGGCACCCCTTAGATTAGGGCAAATTTTTG
ATATTATGCCCCTAAAAGTTCTAAGGGGCGTCCTACGAAAACCATTTTTA
AGGCCTTTTCTGAATCACGGACGCTGGTCTACAAATTGATAAGAGCTTTT
TGTCTACAATTTAATGAAACACATCTTCATTGTATTTCAGCGACCACCAT
GGTGGTGCCGTCGAAAGGACCAGCCTACATCTTACTAAAAGACACAGTTG
GCCTTAAAAGAGCCAAACGTCGTATCGGTGTACGATTTGGTTCGCAAACC
ATCTTCACTGCGCATGCAGGAGCCATCTACCTTGCCAACAAAGATGATAA
ACAACCTCAAGACAAAACCATGATTTCCTTGGTCTCGCTCACCGACACAA
AACGTATTTTGGTCACAGCAAAGGAGAACACACGCATGTTGACCACGGCT
GAGCTGAATATGATGCTTCCAATCACGTCTGACCAAAGACGCGCAAAAAT
TTTATCAACTTCAGTCTTTATGGAAGCGATTACGGCGCAAATTGATGACG
TTGTTGCTGTCAACGATGGTGAACATCAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027814-exon-sc0000646-1575043694:171203..171461 | TCONS_00027814-exon-sc0000646-1575043694:171203..171461 | Clytia hemisphaerica | exon |
| TCONS_00027814-exon-sc0000646-1575043694:162233..162621 | TCONS_00027814-exon-sc0000646-1575043694:162233..162621 | Clytia hemisphaerica | exon |
| TCONS_00027814-exon-sc0000646-1510915933:171203..171461 | TCONS_00027814-exon-sc0000646-1510915933:171203..171461 | Clytia hemisphaerica | exon |
| TCONS_00027814-exon-sc0000646-1510915933:162233..162621 | TCONS_00027814-exon-sc0000646-1510915933:162233..162621 | Clytia hemisphaerica | exon |
| TCONS_00027814-exon-sc0000646-1491911889:171203..171461 | TCONS_00027814-exon-sc0000646-1491911889:171203..171461 | Clytia hemisphaerica | exon |
| TCONS_00027814-exon-sc0000646-1491911889:162233..162621 | TCONS_00027814-exon-sc0000646-1491911889:162233..162621 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000646 | supercontig | sc0000646:162233..171461 - |
Blast
The following BLAST results are available for this feature:
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