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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027811 ID=TCONS_00027811|Name=TCONS_00027811|organism=Clytia hemisphaerica|type=transcript|length=1891bp
TTNAAGCCATAGCTACCATCAAATATGTCGGTCAATTGCCATGGAAACAG
CACACTGGTGTTTATCTGGGTGTGGAATTTGAGAAACCGATTGGTGAAAA
CGACGGATGTGATCTTTTCGAGACCAAAGAAGAACATGGTAAATTCATCA
CAGTTgacaaaattgacaaatttataattaaaaatgaaaaggcGCATTAC
ACTACTACCGAGGATGCTTTGAACCAAAAACCGACCGACGAAAAGAAGAT
CTACAAAAGACTCTCATTCCCAATAGTGTCCACGCTAATCAAAATGAAAC
CGAAAATAAAATCCGCATCTTCGCTTAACGACCTTACAAAACGGGAAGAT
CACCAAAGAGGTACGAATGGTAACGACGAAATCGATGCTCATCGAAAACG
ATCGAGTACCGAGTGTTCACCGAATACAGCACCGATTAAACACGATGATG
ACGACGTCCCTATTTACGCTGTGTCGGAGATTTGCGTAAATCAAGAGCCA
CCACACGAAAGTAACGAATCGGACGAGAAGGAGAAGAAAGCAAACAAGCG
AATGTCTTTCCCCGTTTCGTTGAGTAATTTAGTGCCCAGTTTCCCTGCAA
TGCCTAAAATGAGGCTTCGATCTAAGTCGTTGGAGAATGTTCATAAATTG
AACGTTGAAAACCCATACTATGCAGCAGCTTTGAATATCAGAAAACAATC
CTTAGAAGGGATCGATGAAGGGGATGAAGTCATTGTTTTATGTTTCAATC
AGGGATGTGATgtcaaattagagaaagatctCTTACAAAAACATCAACAA
CAATGCCCCTATGCATTAGAGAAATGTCCAAATAATGGATGTGATTTAGA
AATGAGACGCATAGACATTAACAAGCATGATATAATGGAGTGTGAACATG
CTATCGTGAATTGCAAGCAACCCGGCTGCCAAGTAATACTGTCGAGAAAA
CTGATGACCAAGCACTCCAAAGAATGTGCAAAAGAAGTCCCAAAAGATAG
CACACCACAAGATGCTTACGAAAAGATGTCGGCTGGAACAGATGAAGTCA
TCTACGCAAGCAGTGGCCCTTCTTTCTCCTGCCCTGCTCCAAGGTGTCTC
TATCACAGTGAGGGAAAGCAAATAATGGCGCACATATGTAGTCAACATTC
AGAACTCTTATTGAAACATCTTAAcgaaatcaaattaatttttgcaaaag
aGGAGAAAGATTTTAGTCACTTGTATACAAAACCAATTAAAAAGGTAGCT
CCCATTCCGCGACCCCGGAAGCCAAGTAACAACGATGAAGCGCCACTTTA
CTCCACGCCCTGCAGAGAGGTCTCAAATTCAGAAGCTGAGAAGAATTACG
GTGGCAATCCACTTTATACAACTCCCGATGAAAAACTCACAAGTAGAAAA
GTGGAAGACACTGAATACTTAACGCCTGTAGACGGTTGTAAAATGACAAA
CAATCACGTCTATTTGACCCCCGTCGACGATGGTAAAAACAACAAGAACT
CGAACGACAAAAAGTCATCCAGTCAGGGGGAATATGAATATGTAGCATGG
GACCTTAAGTCAATGTCGATACCTGCTTAAAACAGCGGGTTACTTCTAAA
ATCGAACTTGTTAATCTTAGCTTTTAACCGAAAAACGATAATATTTCTTC
AATAAATGATtaataatttttcgatttcatttttttttagatttaatgTA
TATGTTTAGTCTTTAGGTTCAGTTTTCTTCTCTTCGTTTAACATTCCTCA
TCATTTACAGTACTCTGAATGATCTTTTCAACGGTAAATAATTTGTTAGA
ATTACAGTATTCGTTAGaaaatatcaagtaaaacaaGAATGAATGAATGC
ACACTTTACAAATCGACTTTTGAAAACAGTTGGTCATTATT Run BLAST on NCBI protein sequence of TCONS_00027811-protein >TCONS_00027811-protein ID=TCONS_00027811-protein|Name=TCONS_00027811-protein|organism=Clytia hemisphaerica|type=polypeptide|length=525bp
XAIATIKYVGQLPWKQHTGVYLGVEFEKPIGENDGCDLFETKEEHGKFIT
VDKIDKFIIKNEKAHYTTTEDALNQKPTDEKKIYKRLSFPIVSTLIKMKP
KIKSASSLNDLTKREDHQRGTNGNDEIDAHRKRSSTECSPNTAPIKHDDD
DVPIYAVSEICVNQEPPHESNESDEKEKKANKRMSFPVSLSNLVPSFPAM
PKMRLRSKSLENVHKLNVENPYYAAALNIRKQSLEGIDEGDEVIVLCFNQ
GCDVKLEKDLLQKHQQQCPYALEKCPNNGCDLEMRRIDINKHDIMECEHA
IVNCKQPGCQVILSRKLMTKHSKECAKEVPKDSTPQDAYEKMSAGTDEVI
YASSGPSFSCPAPRCLYHSEGKQIMAHICSQHSELLLKHLNEIKLIFAKE
EKDFSHLYTKPIKKVAPIPRPRKPSNNDEAPLYSTPCREVSNSEAEKNYG
GNPLYTTPDEKLTSRKVEDTEYLTPVDGCKMTNNHVYLTPVDDGKNNKNS
NDKKSSSQGEYEYVAWDLKSMSIPA Run BLAST on NCBI transcript from alignment at sc0000646:159920..162075- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027811 ID=TCONS_00027811|Name=TCONS_00027811|organism=Clytia hemisphaerica|type=transcript|length=2156bp|location=Sequence derived from alignment at sc0000646:159920..162075- (Clytia hemisphaerica)
TTNAAGCCATAGCTACCATCAAATATGTCGGTCAATTGCCATGGAAACAG
CACACTGGTGTTTATCTGGGTGTGGAATTTGAGGTGAAGTCAATATTATT
TTTCATTATTATTAAATAAGTTTTGTTAATCTATGGCCCTTCTGCGAGGA
GCCTGATGTATTATCAAGTTGTCATTATTTAGTGTAAATCCTTTGAGAGA
ACAGTAAAATGATTTTTCAAAAAAAACTCGATAAAACATAAAACCATGCC
ATGCCAGTCAAAACAAACCACGATCCTATGAAGGAAGCGTATATGAAACG
GAAATCGAAAGGTCCCACAACTAATTTTGAATCGTCTTCTGTTTCTAGAA
ACCGATTGGTGAAAACGACGGATGTGATCTTTTCGAGACCAAAGAAGAAC
ATGGTAAATTCATCACAGTTGACAAAATTGACAAATTTATAATTAAAAAT
GAAAAGGCGCATTACACTACTACCGAGGATGCTTTGAACCAAAAACCGAC
CGACGAAAAGAAGATCTACAAAAGACTCTCATTCCCAATAGTGTCCACGC
TAATCAAAATGAAACCGAAAATAAAATCCGCATCTTCGCTTAACGACCTT
ACAAAACGGGAAGATCACCAAAGAGGTACGAATGGTAACGACGAAATCGA
TGCTCATCGAAAACGATCGAGTACCGAGTGTTCACCGAATACAGCACCGA
TTAAACACGATGATGACGACGTCCCTATTTACGCTGTGTCGGAGATTTGC
GTAAATCAAGAGCCACCACACGAAAGTAACGAATCGGACGAGAAGGAGAA
GAAAGCAAACAAGCGAATGTCTTTCCCCGTTTCGTTGAGTAATTTAGTGC
CCAGTTTCCCTGCAATGCCTAAAATGAGGCTTCGATCTAAGTCGTTGGAG
AATGTTCATAAATTGAACGTTGAAAACCCATACTATGCAGCAGCTTTGAA
TATCAGAAAACAATCCTTAGAAGGGATCGATGAAGGGGATGAAGTCATTG
TTTTATGTTTCAATCAGGGATGTGATGTCAAATTAGAGAAAGATCTCTTA
CAAAAACATCAACAACAATGCCCCTATGCATTAGAGAAATGTCCAAATAA
TGGATGTGATTTAGAAATGAGACGCATAGACATTAACAAGCATGATATAA
TGGAGTGTGAACATGCTATCGTGAATTGCAAGCAACCCGGCTGCCAAGTA
ATACTGTCGAGAAAACTGATGACCAAGCACTCCAAAGAATGTGCAAAAGA
AGTCCCAAAAGATAGCACACCACAAGATGCTTACGAAAAGATGTCGGCTG
GAACAGATGAAGTCATCTACGCAAGCAGTGGCCCTTCTTTCTCCTGCCCT
GCTCCAAGGTGTCTCTATCACAGTGAGGGAAAGCAAATAATGGCGCACAT
ATGTAGTCAACATTCAGAACTCTTATTGAAACATCTTAACGAAATCAAAT
TAATTTTTGCAAAAGAGGAGAAAGATTTTAGTCACTTGTATACAAAACCA
ATTAAAAAGGTAGCTCCCATTCCGCGACCCCGGAAGCCAAGTAACAACGA
TGAAGCGCCACTTTACTCCACGCCCTGCAGAGAGGTCTCAAATTCAGAAG
CTGAGAAGAATTACGGTGGCAATCCACTTTATACAACTCCCGATGAAAAA
CTCACAAGTAGAAAAGTGGAAGACACTGAATACTTAACGCCTGTAGACGG
TTGTAAAATGACAAACAATCACGTCTATTTGACCCCCGTCGACGATGGTA
AAAACAACAAGAACTCGAACGACAAAAAGTCATCCAGTCAGGGGGAATAT
GAATATGTAGCATGGGACCTTAAGTCAATGTCGATACCTGCTTAAAACAG
CGGGTTACTTCTAAAATCGAACTTGTTAATCTTAGCTTTTAACCGAAAAA
CGATAATATTTCTTCAATAAATGATTAATAATTTTTCGATTTCATTTTTT
TTTAGATTTAATGTATATGTTTAGTCTTTAGGTTCAGTTTTCTTCTCTTC
GTTTAACATTCCTCATCATTTACAGTACTCTGAATGATCTTTTCAACGGT
AAATAATTTGTTAGAATTACAGTATTCGTTAGAAAATATCAAGTAAAACA
AGAATGAATGAATGCACACTTTACAAATCGACTTTTGAAAACAGTTGGTC
ATTATT Coding sequence (CDS) from alignment at sc0000646:159920..162075- >TCONS_00027811 ID=TCONS_00027811|Name=TCONS_00027811|organism=Clytia hemisphaerica|type=CDS|length=3156bp|location=Sequence derived from alignment at sc0000646:159920..162075- (Clytia hemisphaerica)
AAACCGATTGGTGAAAACGACGGATGTGATCTTTTCGAGACCAAAGAAGA
ACATGGTAAATTCATCACAGTTGACAAAATTGACAAATTTATAATTAAAA
ATGAAAAGGCGCATTACACTACTACCGAGGATGCTTTGAACCAAAAACCG
ACCGACGAAAAGAAGATCTACAAAAGACTCTCATTCCCAATAGTGTCCAC
GCTAATCAAAATGAAACCGAAAATAAAATCCGCATCTTCGCTTAACGACC
TTACAAAACGGGAAGATCACCAAAGAGGTACGAATGGTAACGACGAAATC
GATGCTCATCGAAAACGATCGAGTACCGAGTGTTCACCGAATACAGCACC
GATTAAACACGATGATGACGACGTCCCTATTTACGCTGTGTCGGAGATTT
GCGTAAATCAAGAGCCACCACACGAAAGTAACGAATCGGACGAGAAGGAG
AAGAAAGCAAACAAGCGAATGTCTTTCCCCGTTTCGTTGAGTAATTTAGT
GCCCAGTTTCCCTGCAATGCCTAAAATGAGGCTTCGATCTAAGTCGTTGG
AGAATGTTCATAAATTGAACGTTGAAAACCCATACTATGCAGCAGCTTTG
AATATCAGAAAACAATCCTTAGAAGGGATCGATGAAGGGGATGAAGTCAT
TGTTTTATGTTTCAATCAGGGATGTGATGTCAAATTAGAGAAAGATCTCT
TACAAAAACATCAACAACAATGCCCCTATGCATTAGAGAAATGTCCAAAT
AATGGATGTGATTTAGAAATGAGACGCATAGACATTAACAAGCATGATAT
AATGGAGTGTGAACATGCTATCGTGAATTGCAAGCAACCCGGCTGCCAAG
TAATACTGTCGAGAAAACTGATGACCAAGCACTCCAAAGAATGTGCAAAA
GAAGTCCCAAAAGATAGCACACCACAAGATGCTTACGAAAAGATGTCGGC
TGGAACAGATGAAGTCATCTACGCAAGCAGTGGCCCTTCTTTCTCCTGCC
CTGCTCCAAGGTGTCTCTATCACAGTGAGGGAAAGCAAATAATGGCGCAC
ATATGTAGTCAACATTCAGAACTCTTATTGAAACATCTTAACGAAATCAA
ATTAATTTTTGCAAAAGAGGAGAAAGATTTTAGTCACTTGTATACAAAAC
CAATTAAAAAGGTAGCTCCCATTCCGCGACCCCGGAAGCCAAGTAACAAC
GATGAAGCGCCACTTTACTCCACGCCCTGCAGAGAGGTCTCAAATTCAGA
AGCTGAGAAGAATTACGGTGGCAATCCACTTTATACAACTCCCGATGAAA
AACTCACAAGTAGAAAAGTGGAAGACACTGAATACTTAACGCCTGTAGAC
GGTTGTAAAATGACAAACAATCACGTCTATTTGACCCCCGTCGACGATGG
TAAAAACAACAAGAACTCGAACGACAAAAAGTCATCCAGTCAGGGGGAAT
ATGAATATGTAGCATGGGACCTTAAGTCAATGTCGATACCTGCTTAANAA
GCCATAGCTACCATCAAATATGTCGGTCAATTGCCATGGAAACAGCACAC
TGGTGTTTATCTGGGTGTGGAATTTGAGAAACCGATTGGTGAAAACGACG
GATGTGATCTTTTCGAGACCAAAGAAGAACATGGTAAATTCATCACAGTT
GACAAAATTGACAAATTTATAATTAAAAATGAAAAGGCGCATTACACTAC
TACCGAGGATGCTTTGAACCAAAAACCGACCGACGAAAAGAAGATCTACA
AAAGACTCTCATTCCCAATAGTGTCCACGCTAATCAAAATGAAACCGAAA
ATAAAATCCGCATCTTCGCTTAACGACCTTACAAAACGGGAAGATCACCA
AAGAGGTACGAATGGTAACGACGAAATCGATGCTCATCGAAAACGATCGA
GTACCGAGTGTTCACCGAATACAGCACCGATTAAACACGATGATGACGAC
GTCCCTATTTACGCTGTGTCGGAGATTTGCGTAAATCAAGAGCCACCACA
CGAAAGTAACGAATCGGACGAGAAGGAGAAGAAAGCAAACAAGCGAATGT
CTTTCCCCGTTTCGTTGAGTAATTTAGTGCCCAGTTTCCCTGCAATGCCT
AAAATGAGGCTTCGATCTAAGTCGTTGGAGAATGTTCATAAATTGAACGT
TGAAAACCCATACTATGCAGCAGCTTTGAATATCAGAAAACAATCCTTAG
AAGGGATCGATGAAGGGGATGAAGTCATTGTTTTATGTTTCAATCAGGGA
TGTGATGTCAAATTAGAGAAAGATCTCTTACAAAAACATCAACAACAATG
CCCCTATGCATTAGAGAAATGTCCAAATAATGGATGTGATTTAGAAATGA
GACGCATAGACATTAACAAGCATGATATAATGGAGTGTGAACATGCTATC
GTGAATTGCAAGCAACCCGGCTGCCAAGTAATACTGTCGAGAAAACTGAT
GACCAAGCACTCCAAAGAATGTGCAAAAGAAGTCCCAAAAGATAGCACAC
CACAAGATGCTTACGAAAAGATGTCGGCTGGAACAGATGAAGTCATCTAC
GCAAGCAGTGGCCCTTCTTTCTCCTGCCCTGCTCCAAGGTGTCTCTATCA
CAGTGAGGGAAAGCAAATAATGGCGCACATATGTAGTCAACATTCAGAAC
TCTTATTGAAACATCTTAACGAAATCAAATTAATTTTTGCAAAAGAGGAG
AAAGATTTTAGTCACTTGTATACAAAACCAATTAAAAAGGTAGCTCCCAT
TCCGCGACCCCGGAAGCCAAGTAACAACGATGAAGCGCCACTTTACTCCA
CGCCCTGCAGAGAGGTCTCAAATTCAGAAGCTGAGAAGAATTACGGTGGC
AATCCACTTTATACAACTCCCGATGAAAAACTCACAAGTAGAAAAGTGGA
AGACACTGAATACTTAACGCCTGTAGACGGTTGTAAAATGACAAACAATC
ACGTCTATTTGACCCCCGTCGACGATGGTAAAAACAACAAGAACTCGAAC
GACAAAAAGTCATCCAGTCAGGGGGAATATGAATATGTAGCATGGGACCT
TAAGTCAATGTCGATACCTGCTTAANAAGCCATAGCTACCATCAAATATG
TCGGTCAATTGCCATGGAAACAGCACACTGGTGTTTATCTGGGTGTGGAA
TTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027811-exon-sc0000646-1575043694:161993..162075 | TCONS_00027811-exon-sc0000646-1575043694:161993..162075 | Clytia hemisphaerica | exon |
| TCONS_00027811-exon-sc0000646-1575043694:159920..161727 | TCONS_00027811-exon-sc0000646-1575043694:159920..161727 | Clytia hemisphaerica | exon |
| TCONS_00027811-exon-sc0000646-1510915933:161993..162075 | TCONS_00027811-exon-sc0000646-1510915933:161993..162075 | Clytia hemisphaerica | exon |
| TCONS_00027811-exon-sc0000646-1510915933:159920..161727 | TCONS_00027811-exon-sc0000646-1510915933:159920..161727 | Clytia hemisphaerica | exon |
| TCONS_00027811-exon-sc0000646-1491911889:161993..162075 | TCONS_00027811-exon-sc0000646-1491911889:161993..162075 | Clytia hemisphaerica | exon |
| TCONS_00027811-exon-sc0000646-1491911889:159920..161727 | TCONS_00027811-exon-sc0000646-1491911889:159920..161727 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000646 | supercontig | sc0000646:159920..162075 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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