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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027809 ID=TCONS_00027809|Name=TCONS_00027809|organism=Clytia hemisphaerica|type=transcript|length=2653bpRun BLAST on NCBI protein sequence of TCONS_00027809-protein >TCONS_00027809-protein ID=TCONS_00027809-protein|Name=TCONS_00027809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=593bp MIFPAKLIVICCLFLIKPSTGEGDDAKATTQSPPLTTPFTNSSTTSNSTVRun BLAST on NCBI transcript from alignment at sc0000646:95374..106275- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027809 ID=TCONS_00027809|Name=TCONS_00027809|organism=Clytia hemisphaerica|type=transcript|length=10902bp|location=Sequence derived from alignment at sc0000646:95374..106275- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000646:95374..106275- >TCONS_00027809 ID=TCONS_00027809|Name=TCONS_00027809|organism=Clytia hemisphaerica|type=CDS|length=28512bp|location=Sequence derived from alignment at sc0000646:95374..106275- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027809 vs. Swiss-Prot (Human)
Match: SL9A8 (Sodium/hydrogen exchanger 8 OS=Homo sapiens GN=SLC9A8 PE=1 SV=4) HSP 1 Score: 518.464 bits (1334), Expect = 3.552e-173 Identity = 294/515 (57.09%), Postives = 396/515 (76.89%), Query Frame = 2
Query: 353 MTIFFVLSVLGLCIITIHFLIKTKFSYLPESVAIVFVGAMLGGLIQLLKKYNLADWEKEEXXXXXXXXXXXXXXXXXESGYNLHKGNFFANIGSIIVFAVFGTLISAVIVGGVIYILGKGNIIHPLTSKESFVFGSLISAVDPVATLAIFHALNVDPLLNMLVFGESILNDAVAIVLTRAVLNST-----------TFMSSVVAFVKIFFGSSLIGVVSAALSALITKYVDLRQHPSLELGMMFIFAYAPYGLAEGLQLSGIMAILFCGIVMSHYTHFNLSPVSQITVQHLFRTAAFVGETCVFAYLGMSIFSYDHKFEAAFIIWSIVLILVGRAVNIFPLTFVLNYFRETKISRRNQLIMWFSGLRGAIAFALAINLDSLEEDKRRXXXXXXXXXXXXXXXXXXXXXXXXXKCMDRRE--RNNENEGQLSLSKTAAEGSAVEAE---QLTDDEWR--LTKRIAMKGFTKIDAKYLVPFLTRKVTRQELRNAQHEMQKLTSQWYSEVRDSPDTSD 1843
MTIFF L VL +CII +H LI+ + +LPESVA+V +G ++G +I++++ LA+W++EE+F P +FFL+LLPPIIFESGY+LHKGNFF NIGSI +FAVFGT ISA +VGG IY LG+ ++I L +SF FGSLISAVDPVAT+AIF+AL+VDP+LNMLVFGESILNDAV+IVLT T TF+ ++ F+K+FFGS+ +G ++ +SAL+ K++DLR+ PSLE GMM IFAY PYGLAEG+ LSGIMAILF GIVMSHYTH NLSPV+QI +Q RT AF+ ETCVFA+LG+SIFS+ HKFE +F+IW IVL+L GRAVNIFPL+++LN+FR+ KI+ + IMWFSGLRGAI +AL+++LD +KR+L+ TTT+VIVLFT+L+LGGST+PL++ MD + + N+ ++LSKT G+ VE+E +LT++E+ +R +KGF +DAKYL PF TR++T+++L + + +M+ LT++WY EVR P S+
Sbjct: 60 MTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKIIEFKKLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVGGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTNTAEGLTRKNMSDVSGWQTFLQALDYFLKMFFGSAALGTLTGLISALVLKHIDLRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFLCETCVFAFLGLSIFSFPHKFEISFVIWCIVLVLFGRAVNIFPLSYLLNFFRDHKITPKMMFIMWFSGLRGAIPYALSLHLDLEPMEKRQLIGTTTIVIVLFTILLLGGSTMPLIRLMDIEDAKAHRRNKKDVNLSKTEKMGNTVESEHLSELTEEEYEAHYIRRQDLKGFVWLDAKYLNPFFTRRLTQEDLHHGRIQMKTLTNKWYEEVRQGPSGSE 574 The following BLAST results are available for this feature:
BLAST of TCONS_00027809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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