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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027815 ID=TCONS_00027815|Name=TCONS_00027815|organism=Clytia hemisphaerica|type=transcript|length=3468bp
agcagacttttctcttgacactcGGACACTTACCTTGTTTACACATAcaa
tatacaataaaaaaagacacccgttatagcatggtatgggctgacagttt
gaatttaCCAGATCCTAatgacggttgaaaacacagccaatcaaattctg
ttattctttcactggtcacactttctcaGAGAAAACGCAACtcccgaaat
ttggtttttattttagtaggTGAGGACAGCGCttaattcgaatttcccac
tgtaaattttttgaagcaGGTCATACCCTTCCTGTATACTTACATCAGAA
TATAAAAATACAAACAGGTCTCCTGTCTAATCTCTATTTggattgggatt
tcgatagaaatcttTTCATCTCCGCAAAAGGGGAAATTTCCACCGGGGCC
AATGAGACAGggttgtttttattgtttaaagTTAAATCTTTAGTCTTTCA
TTAACAGAGCCAAAGAGCTAAAAAGAAAGGCCATGAAAAATAAAGTACCA
AGTTCATTTATCGCTCTTTCACCGTGATTTGGACATTGGAGATGGTCAAA
AGAAGATGTGTGAAATTTGCACTTTATATCGTAAATATCTCGATCACATT
ACTGTTCAAGGGATCGAAGACAGAGAGCACGTACAGTTATGTTCATGTTA
GACTTTAGCAGattattttgtttatatctACTTAGTTTTATACAATTGTT
CTGAGACTTATGATAACAGTGAAACGAGTTTCCttcaaagtgaatttttc
tcctACTCCCAAGGCTCCCAAGTGTGTAGCAATAATCACAAAGTCATTAA
GAGGTTTTCAGATCTTAAAAGCTACCTCAATTATATGTAACGATTTGTAT
GTTATGTTCTGAAGTAACACTCTTTCAATGAATATTTTGTTTAATTTGTt
gattgtgatttgattggttcggCCTTCATCCCAAGGCTATTTCCATGGTT
ACTATCGCTGAAAAAGGATCGTTGTTTGTCGTCACAGTGTAGTATGTGGA
TTTTTAATCTGCAAGTTAGTGAGTATTGAGGAGGGGGTACAATTTTTCGC
TCAAATCTATCAAAATTGACTATGGTTACACGGTAAGGGTTTAacttcaa
aggcctaattttgggccgtaCATACAGTGATTTTCAATCGAGTGCCTGAG
TGAGTCAGTTGAATTATTTTATGTGAGTTAtgggtcaaaatattattttt
gcgTTGACGGCTATTCCTGTTACTTGCGTTCCTGCGAATTGACTGTTCTG
TTTGTTTCAAAAGAGACAaagaaaaagagtttttttataTCTGAGACTAT
CCAGTCCGACCACAAAAAGTGGGATAATACACTTTACGGTTGCGCCAGTT
TTCCGAAACAGCCGACAACGAGTGATAAAAATGATTAATGGTTCAGTAAA
AACAGCTCTATACTAGTACTAGTACTGTACTAGCCAACCATATAGTTTTT
TTTGCACAGTGCAGGGAATAAGCCTGTCTGCCTTTTAAACAACGGCtcat
cactttcgatttctacTCAATATTTTAGCAACGGGGTGATCGCTCATAGT
TACAGGCGTTTGTGCTAAAACCAAACATAGAAAACAGTAGGGTAGCCAAG
AGGGacacaaaatttgtgtaggagcgagctgatttttatgacactgtaat
catctattcatggtattaaaagataattataatggcataaaaatctgctc
tcctcttggctacgctacttgaaaattttccaaataaacTTTTCTTTACT
TATAATTTGCAACTGACGTTTTTATTGGTAACTCGCGCTTTGAAAAATCC
TGTCATACACTATGATACTGTTAAAAAGGTAATCCTGAATgggataaaat
ctttaaagctttttcttccCAACTTTCTTTATGCCTTCCCAACTTTCTTT
ATGCGTTCATCCAGAAATGAAAAAGTAGTGGGTGACATTGCGCAATGAAA
AAGCTGTTTCCTCTCGTGTATCATTAAGTTAAATGAAAGAAAAGTAAGTA
AACGGGATGTGTCAAAGGAAACTTTGCACTATATCACGATGTTAGTATAA
CGGTGACAACTGCGTCGTAACATGTGTGTAAGCGTAAAGTTCACTATCGA
TGCTCCCAACCACCTGTATATCAAAAACATTGTATATTATCAAATACGAC
CAAACGAAAACACCAAGTTTTATAAATCCGATTGTGTCCCAAAGCATCGA
TAAAAAAGTTCAAGGAACGAAACTATAAAAAGGCCAACAAGGATCTAGAA
TATGCTACAATCACTAAACTTCGATATCGAAACAAGAAGAAAACGTTTAA
TTATCCATGAGATCGAGCATGGAATAATAGAAGACAAGAGACAAAAGGAC
GGTTTGTatatgaagaagaagaagaagaaaatatttaaaacctgCAAGAC
AATATCGATGTTACTTTGCCAGCATTAACGCATCATCACCATATCGGTAA
GCCAAAAACGATAAACACCGACAAATAGTAGcctcatttcaaaacaaatt
taacAAAGACTGGATGATGAGGAATCTTTGTAAGTTTTATAAATTGAGAG
ATGGATGCTGCAGAGTTTCAGCATCACAGAAGATTTCACtttcaaagaaa
gaaaacaacTTAAAGAGTTTCACGAAGAAGCTAAAACGAAATACTGAAAA
CACTGATCTGATCCCTATTTCATCTAGCGTGTTAGAAGAAACCTCAGAAC
ATCCTTTCGTCTTAAAAAGATCTAACAAGAATAACGAAAGAAACGTTCAA
ATAATAGCAGTCTTAAATTGTAATAAAGCTTAGCCTGAAAGAATGACAGG
GTTGCATATTTGCAAAGAAACTAAAATGCTTAAGCAACGACACCAACACC
AGTACcaataaaaaagagaaagaagatAGAAGGAGAAGGCGAAGAGACTG
AACTCCGATAGAAGACATTTATTAAAGGACTTGGACAGTTAATTGGACAA
TCGACAAGCTAGCAGATAGTCTTCAGAATGTTATTTGAGTGTTCAGTAGA
AGTTTGAATCCGTATTGAGAATGGTGTCCGATTTTGAACTCAATGACATA
AGAAATTATTCTTTTAAAGTGAAGATTAATTAACGACTTTCGAGTAGATC
TTTTTTGCTCTCCTGTTACCGGAAGATATTCTATGTTAGATATTGTTTGA
TTTTCTTGGAAAGATTAGGAAATTAGAAAGGTTAATTTTGGATTAAATCT
TTTCATAACTATTATTGCAATTACATTATTGACCCGTTAGTTTGTACCAC
TGTATGGGACTGTACATAATGGGACGTGAAGCAAAAGGTCAAGTAACGAC
AGAGCCTACAAAAGGACACATGCAAACGTACGGCTTGTGAAATTAGCGAA
TCGTAAAAAGTATGTACAGCGGTAACGAAGTCACTTGCAGTACTTTATGA
GTCCTTCTTGGACTACCAAGACTCCCTTGAACTGGAAATTGttgaagtga
tttttttttcatttttag Run BLAST on NCBI transcript from alignment at sc0000646:6845..10312 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027815 ID=TCONS_00027815|Name=TCONS_00027815|organism=Clytia hemisphaerica|type=transcript|length=3468bp|location=Sequence derived from alignment at sc0000646:6845..10312 (Clytia hemisphaerica)
ctaaaaatgaaaaaaaaatcacttcaaCAATTTCCAGTTCAAGGGAGTCT
TGGTAGTCCAAGAAGGACTCATAAAGTACTGCAAGTGACTTCGTTACCGC
TGTACATACTTTTTACGATTCGCTAATTTCACAAGCCGTACGTTTGCATG
TGTCCTTTTGTAGGCTCTGTCGTTACTTGACCTTTTGCTTCACGTCCCAT
TATGTACAGTCCCATACAGTGGTACAAACTAACGGGTCAATAATGTAATT
GCAATAATAGTTATGAAAAGATTTAATCCAAAATTAACCTTTCTAATTTC
CTAATCTTTCCAAGAAAATCAAACAATATCTAACATAGAATATCTTCCGG
TAACAGGAGAGCAAAAAAGATCTACTCGAAAGTCGTTAATTAATCTTCAC
TTTAAAAGAATAATTTCTTATGTCATTGAGTTCAAAATCGGACACCATTC
TCAATACGGATTCAAACTTCTACTGAACACTCAAATAACATTCTGAAGAC
TATCTGCTAGCTTGTCGATTGTCCAATTAACTGTCCAAGTCCTTTAATAA
ATGTCTTCTATCGGAGTTCAGTCTCTTCGCCTTCTCCTTCTatcttcttt
ctcttttttattgGTACTGGTGTTGGTGTCGTTGCTTAAGCATTTTAGTT
TCTTTGCAAATATGCAACCCTGTCATTCTTTCAGGCTAAGCTTTATTACA
ATTTAAGACTGCTATTATTTGAACGTTTCTTTCGTTATTCTTGTTAGATC
TTTTTAAGACGAAAGGATGTTCTGAGGTTTCTTCTAACACGCTAGATGAA
ATAGGGATCAGATCAGTGTTTTCAGTATTTCGTTTTAGCTTCTTCGTGAA
ACTCTTTAAgttgttttctttctttgaaaGTGAAATCTTCTGTGATGCTG
AAACTCTGCAGCATCCATCTCTCAATTTATAAAACTTACAAAGATTCCTC
ATCATCCAGTCTTTgttaaatttgttttgaaatgaggCTACTATTTGTCG
GTGTTTATCGTTTTTGGCTTACCGATATGGTGATGATGCGTTAATGCTGG
CAAAGTAACATCGATATTGTCTTGcaggttttaaatattttcttcttctt
cttcttcatatACAAACCGTCCTTTTGTCTCTTGTCTTCTATTATTCCAT
GCTCGATCTCATGGATAATTAAACGTTTTCTTCTTGTTTCGATATCGAAG
TTTAGTGATTGTAGCATATTCTAGATCCTTGTTGGCCTTTTTATAGTTTC
GTTCCTTGAACTTTTTTATCGATGCTTTGGGACACAATCGGATTTATAAA
ACTTGGTGTTTTCGTTTGGTCGTATTTGATAATATACAATGTTTTTGATA
TACAGGTGGTTGGGAGCATCGATAGTGAACTTTACGCTTACACACATGTT
ACGACGCAGTTGTCACCGTTATACTAACATCGTGATATAGTGCAAAGTTT
CCTTTGACACATCCCGTTTACTTACTTTTCTTTCATTTAACTTAATGATA
CACGAGAGGAAACAGCTTTTTCATTGCGCAATGTCACCCACTACTTTTTC
ATTTCTGGATGAACGCATAAAGAAAGTTGGGAAGGCATAAAGAAAGTTGg
gaagaaaaagctttaaagattttatcccATTCAGGATTACCTTTTTAACA
GTATCATAGTGTATGACAGGATTTTTCAAAGCGCGAGTTACCAATAAAAA
CGTCAGTTGCAAATTATAAGTAAAGAAAAgtttatttggaaaattttcaa
gtagcgtagccaagaggagagcagatttttatgccattataattatcttt
taataccatgaatagatgattacagtgtcataaaaatcagctcgctccta
cacaaattttgtgtCCCTCTTGGCTACCCTACTGTTTTCTATGTTTGGTT
TTAGCACAAACGCCTGTAACTATGAGCGATCACCCCGTTGCTAAAATATT
GAgtagaaatcgaaagtgatgaGCCGTTGTTTAAAAGGCAGACAGGCTTA
TTCCCTGCACTGTGCAAAAAAAACTATATGGTTGGCTAGTACAGTACTAG
TACTAGTATAGAGCTGTTTTTACTGAACCATTAATCATTTTTATCACTCG
TTGTCGGCTGTTTCGGAAAACTGGCGCAACCGTAAAGTGTATTATCCCAC
TTTTTGTGGTCGGACTGGATAGTCTCAGAtataaaaaaactctttttctt
TGTCTCTTTTGAAACAAACAGAACAGTCAATTCGCAGGAACGCAAGTAAC
AGGAATAGCCGTCAAcgcaaaaataatattttgacccaTAACTCACATAA
AATAATTCAACTGACTCACTCAGGCACTCGATTGAAAATCACTGTATGta
cggcccaaaattaggcctttgaagtTAAACCCTTACCGTGTAACCATAGT
CAATTTTGATAGATTTGAGCGAAAAATTGTACCCCCTCCTCAATACTCAC
TAACTTGCAGATTAAAAATCCACATACTACACTGTGACGACAAACAACGA
TCCTTTTTCAGCGATAGTAACCATGGAAATAGCCTTGGGATGAAGGccga
accaatcaaatcacaatcaACAAATTAAACAAAATATTCATTGAAAGAGT
GTTACTTCAGAACATAACATACAAATCGTTACATATAATTGAGGTAGCTT
TTAAGATCTGAAAACCTCTTAATGACTTTGTGATTATTGCTACACACTTG
GGAGCCTTGGGAGTaggagaaaaattcactttgaaGGAAACTCGTTTCAC
TGTTATCATAAGTCTCAGAACAATTGTATAAAACTAAGTagatataaaca
aaataatCTGCTAAAGTCTAACATGAACATAACTGTACGTGCTCTCTGTC
TTCGATCCCTTGAACAGTAATGTGATCGAGATATTTACGATATAAAGTGC
AAATTTCACACATCTTCTTTTGACCATCTCCAATGTCCAAATCACGGTGA
AAGAGCGATAAATGAACTTGGTACTTTATTTTTCATGGCCTTTCTTTTTA
GCTCTTTGGCTCTGTTAATGAAAGACTAAAGATTTAActttaaacaataa
aaacaaccCTGTCTCATTGGCCCCGGTGGAAATTTCCCCTTTTGCGGAGA
TGAAaagatttctatcgaaatcccaatccAAATAGAGATTAGACAGGAGA
CCTGTTTGTATTTTTATATTCTGATGTAAGTATACAGGAAGGGTATGACC
tgcttcaaaaaatttacagtgggaaattcgaattaaGCGCTGTCCTCAcc
tactaaaataaaaaccaaatttcgggaGTTGCGTTTTCTCtgagaaagtg
tgaccagtgaaagaataacagaatttgattggctgtgttttcaaccgtca
tTAGGATCTGGtaaattcaaactgtcagcccataccatgctataacgggt
gtctttttttattgtatattgTATGTGTAAACAAGGTAAGTGTCCgagtg
tcaagagaaaagtctgct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027815-exon-sc0000646-1491911889:6845..10312 | TCONS_00027815-exon-sc0000646-1491911889:6845..10312 | Clytia hemisphaerica | exon |
| TCONS_00027815-exon-sc0000646-1510915933:6845..10312 | TCONS_00027815-exon-sc0000646-1510915933:6845..10312 | Clytia hemisphaerica | exon |
| TCONS_00027815-exon-sc0000646-1575043694:6845..10312 | TCONS_00027815-exon-sc0000646-1575043694:6845..10312 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000646 | supercontig | sc0000646:6845..10312 . |
Blast
The following BLAST results are available for this feature:
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