TCONS_00046293-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046293-protein
Unique NameTCONS_00046293-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length294

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046293-protein ID=TCONS_00046293-protein|Name=TCONS_00046293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
MGDPVSYGAHQSNSEAGQLLATYWPRVMADIRTKPFLQKTGKKDEPIQEL
PLARIKKIMKQDGDVKMISAEAPILFAKAAEIFISELSLRAWIHTEDNKR
RTLQRNDIAMAITKYDQFDFLIDIVPRDELKPAKRQEEVVRQPPNVMAPE
QVQYYFHLSQLQSNAAAAAGTTNSSATPVQATANTPQITHLPPGAHVIQQ
NGQFIIATPQQLSGLQSTGATPAQTANGAVQPQIVQLAQPPPQAAQQNTS
TTPASAEGTQSAVQQSTSNVVQQQSTELSTSQAQSNTTQVQCFI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029558XLOC_029558Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046293TCONS_00046293Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.20.10coord: 37..292
e-value: 5.7E-35
score: 119.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 239..270
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 48..112
e-value: 2.7E-21
score: 75.5
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 11..121

Blast
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BLAST of TCONS_00046293-protein vs. Swiss-Prot (Human)
Match: NFYC (Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3)

HSP 1 Score: 216.468 bits (550), Expect = 2.603e-67
Identity = 109/149 (73.15%), Postives = 122/149 (81.88%), Query Frame = 0 
Query:   12 SNSEAGQLLATYWPRVMADIRTKPFLQKTGKKDEPIQELPLARIKKIMKQDGDVKMISAEAPILFAKAAEIFISELSLRAWIHTEDNKRRTLQRNDIAMAITKYDQFDFLIDIVPRDELKPAKRQEEVVRQPPNVMAPEQVQYYFHLSQ 160
            S+S+A Q L ++WPRVM +IR          KD  +QELPLARIKKIMK D DVKMISAEAP+LFAKAA+IFI+EL+LRAWIHTEDNKRRTLQRNDIAMAITK+DQFDFLIDIVPRDELKP KRQEE VRQ  +V   E VQYYF L+Q
Sbjct:   11 SSSDAQQSLQSFWPRVMEEIRNLTV------KDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKPPKRQEE-VRQ--SVTPAEPVQYYFTLAQ 150
The following BLAST results are available for this feature:
BLAST of TCONS_00046293-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NFYC2.603e-6773.15Nuclear transcription factor Y subunit gamma OS=Ho... [more]
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