TCONS_00045991-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045991-protein
Unique NameTCONS_00045991-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length123

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045991-protein ID=TCONS_00045991-protein|Name=TCONS_00045991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MAMQKRNNVRLPPEVNRILYVRNLPYKITSEEIYDIFGKYGALRQVRLGV
TNEARGTAYIVYEDIFDAKMACDHLSGFNVCNRYLIVLYYQPTKMFQKMD
KEKKQDQIDKLKEKYGVTTTPAR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029394XLOC_029394Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045991TCONS_00045991Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR034150SF3B14_RRM
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 94..114
NoneNo IPR availableGENE3D3.30.70.330coord: 2..111
e-value: 8.8E-21
score: 73.7
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 18..88
e-value: 5.8E-15
score: 65.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 19..85
e-value: 1.9E-14
score: 53.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 17..92
score: 14.675
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 16..97
IPR034150SF3B14, RNA recognition motifCDDcd12241RRM_SF3B14coord: 15..91
e-value: 4.54317E-49
score: 152.385

Blast
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BLAST of TCONS_00045991-protein vs. Swiss-Prot (Human)
Match: SF3B6 (Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF3B6 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.705e-66
Identity = 91/125 (72.80%), Postives = 107/125 (85.60%), Query Frame = 0 
Query:    1 MAMQ--KRNNVRLPPEVNRILYVRNLPYKITSEEIYDIFGKYGALRQVRLGVTNEARGTAYIVYEDIFDAKMACDHLSGFNVCNRYLIVLYYQPTKMFQKMDKEKKQDQIDKLKEKYGVTTTPAR 123
            MAMQ  KR N+RLPPEVNRILY+RNLPYKIT+EE+YDIFGKYG +RQ+R+G T E RGTAY+VYEDIFDAK ACDHLSGFNVCNRYL+VLYY   + FQKMD +KK++Q+  LKEKYG+ T P +
Sbjct:    1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTDPPK 125
The following BLAST results are available for this feature:
BLAST of TCONS_00045991-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SF3B61.705e-6672.80Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF... [more]
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