TCONS_00027746 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027746
Unique NameTCONS_00027746
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length794

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027746 ID=TCONS_00027746|Name=TCONS_00027746|organism=Clytia hemisphaerica|type=transcript|length=794bp
CTGGTGGTTGATGgtcttattttcaaatcagggaagtaaattttttaatt
gtgtGTGTGCTACACAATACTATTAGTTTTAATATTTGTTCTTGATCTTG
GaatgattgaatttcttttttcaaatctgATTTCTGCACCATTTCTCATT
TTAGATTCACCACGACCACAATCAACCAATTCGACAACTAAAGTACTtaa
caaaatttcaataattcaaaaaatggaaactCGCACCATTGACCCGGCTG
TAAACAGTCTCATGAATCAAATGCAAGATTTGATAAACTATGCTACTGAA
CAGCTTAACAACATCCAGAAGAACCATTATAGTTTTGatggtGCTTCTAA
GTCGTTGGACAATATTCCTGTTGGTGTCCCGATTAGCCAAGTCAcatttg
cACGTCAGCTGTTTTTGCACAGAGCCAGCACAATTCAGAACGCTGACTAT
TCTGATGCTGCTTTGGGGTTCTGGATCAAGCACGATGGGATCGTTCCGCC
CAGGGAAAGACGTAATGAAGGGGAGAATGTAAGCGGAAGGGGACGTGGTG
GCCGAAGAGGTGGTCGTGTTGGTCGTGGCGGTGGACGGGTGGGTGGCGAG
GAAGAACCGCGCCGCAGAGGTCGATCTCCCTCGAGAAGAGCTCGATCGCG
GTCTCGTCGGAGAACTTGCACACCGTGCAGCCGCCATAGACGACGATGCa
gccattaattttgctttatttcattttatttttttacttgttttttgaaa
aagttaatgCAGAGCTattttaatacaataatgatcGACTGGTG
Run BLAST on NCBI

protein sequence of TCONS_00027746-protein

>TCONS_00027746-protein ID=TCONS_00027746-protein|Name=TCONS_00027746-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MIEFLFSNLISAPFLILDSPRPQSTNSTTKVLNKISIIQKMETRTIDPAV
NSLMNQMQDLINYATEQLNNIQKNHYSFDGASKSLDNIPVGVPISQVTFA
RQLFLHRASTIQNADYSDAALGFWIKHDGIVPPRERRNEGENVSGRGRGG
RRGGRVGRGGGRVGGEEEPRRRGRSPSRRARSRSRRRTCTPCSRHRRRCS
H
Run BLAST on NCBI

transcript from alignment at sc0000644:10175..12721+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027746 ID=TCONS_00027746|Name=TCONS_00027746|organism=Clytia hemisphaerica|type=transcript|length=2547bp|location=Sequence derived from alignment at sc0000644:10175..12721+ (Clytia hemisphaerica)
CTGGTGGTTGATGgtcttattttcaaatcagggaagtaaattttttaatt
gtgtGTGTGCTACACAATACTATTAGTTTTAATATTTGTTCTTGATCTTG
GaatgattgaatttcttttttcaaatctgATTTCTGCACCATTTCTCATT
TTAGATTCACCACGACCACAATCAACCAATTCGACAACTAAAGGTAATAA
ACCTCTCTAACCTTTTTTCTTGTCATCCTTTTATCCTGCTAAAGAGTGCA
TTATTGACAGTTCTTATTCTAAGTGAATATTATCCAGATAAGTGCACGAC
AGAAATTAACTCAGTTTACTTCCTTTGTTTAGATATTGAGCAAGAATGTC
TTTACCAGGAAATCGTGGTTTTGTTACACATAGTTTATGAAGATTTGCTA
ATTATTTGTAGTAGAAACTCTAGAAGTCTAATCTGATGTATCAGGGTATT
TTGAGAAGTTATTTTAATAATGGGAAACTATTTTAGCTTTTAGTGATTTT
TCATTCTCATTAAATATTTCAAGTGCTATCTATATCGAGTCTAAATCAAG
TTTTACAATTGACGCAATAGTCAGAAACCTTACCCGCAGCTTGATTTATT
ATACtactttttatcattgttttgttTGATCCTGTTTGATCATTAATTTT
AGTTaactaaaatttatttattgtgAATATGTACCGACGAAATATCATAC
CATCTCCCTGCGTATCGTTGACATTTAATTATCCTAGTTTTTATCAATAA
TGAATAAGTAATACCACGGCCCTTAACTACTTAACTACTGTTTTTGCAAG
TATTTGTATGGTATATTTTATCCATAAACTCTCAAATGTCTACTCTGGAG
TTACCTTCGAAACTTTCATTAAAGATCATTATCGTTTTTATTATTAAACT
CCTTGATAACCCGGGAAAAAAGCGTACGGGGATGTGCTGCTGGTACCTTT
TTTCATCCCaccagtcccacgtagggtcgcaaaacaccaaaatagaaaaa
tcattcCCTCgtatgtttttttgaaaaaatttgagagttttaGTTCCATG
TTTTTTagttcagggtcacttttttcgaaaaaaagagtCCCACGTAGGAT
CCATTTCCGCTTCAGCGGCACACCCCTGTCGGTCGGTGCGGTAAGGGGGA
TGATAACAATGCCATTCTAATTGTCTTTTATTATTTCAGTACTtaacaaa
atttcaataattcaaaaaatggaaactCGCACCATTGACCCGGCTGTAAA
CAGTCTCATGAATCAAATGCAAGATTTGATAAACTATGGTAAAGGcatat
aattttttcaaaagttggtTTCAGAAGTTTTCCAAATTTGCTACTAATTA
CATCTTTATCCAAACTTAAAGAAGATTTATTCTGGGAGTAACTGGCTTAT
TCTATATTCctcttctttttcatcttttagCTACTGAACAGCTTAACAAC
ATCCAGAAGAACCATTATAGTTTTGGTAGGTATATCTTGACCATTTATTT
CAATTAAAATGTACTAATTTTTACATCTGACTAAGAGATTTTTCCAACTA
ACATTTCATTTTGACCACACTAACAGCTATTATGCCCTGAGAAGCGTTCT
CTTATTAACTGCTCTTGTGTACATAATCaatactattttttttttcagat
ggtGCTTCTAAGTCGTTGGACAATATTCCTGTTGGTGTCCCGATTAGCCA
AGTCAGTAAGTAAATGAATAatggaaattttcaacattaacACACTACCT
TAGTTTGTCTTGAACCTCGACCAAATCGATTTAATGCTAATTCCAAATTG
GTATAATactaaaactttttttgagttttataggatatcaaatctttaaa
aaggtaATTACACCGGTGGTGAGAGGggtttcatttaaaaacaaccGTAT
GTGACGCCCTTAAAATCTGAACCTAACAGTGCAGAAAAGAATTCGTAAAC
TTTAAGTAAGTTTGGATAGAAAgtcgacccttacggtgcattttttttca
tttcaaattaaaaacgtCTTTCTCACTTTTTCAAAGTGAACTTTttctca
tttcgacccttacagggCACTTTGAGAAGCCCCCTCCACCCTAGTAATTa
ctctattgaataaaagaaggtCTAACTATactatattttattttcagcat
ttgcACGTCAGCTGTTTTTGCACAGAGCCAGCACAATTCAGAACGCTGAC
TATTCTGATGCTGCTTTGGGGTTCTGGATCAAGCACGATGGGATCGTTCC
GCCCAGGGAAAGACGTAATGAAGGGGAGAATGTAAGCGGAAGGGGACGTG
GTGGCCGAAGAGGTGGTCGTGTTGGTCGTGGCGGTGGACGGGTGGGTGGC
GAGGAAGAACCGCGCCGCAGAGGTCGATCTCCCTCGAGAAGAGCTCGATC
GCGGTCTCGTCGGAGAACTTGCACACCGTGCAGCCGCCATAGACGACGAT
GCagccattaattttgctttatttcattttatttttttacttgttttttg
aaaaagttaatgCAGAGCTattttaatacaataatgatcGACTGGTG

Coding sequence (CDS) from alignment at sc0000644:10175..12721+

>TCONS_00027746 ID=TCONS_00027746|Name=TCONS_00027746|organism=Clytia hemisphaerica|type=CDS|length=3030bp|location=Sequence derived from alignment at sc0000644:10175..12721+ (Clytia hemisphaerica)
atgattgaatttcttttttcaaatctgATTTCTGCACCATTTCTCATTTT
AGATTCACCACGACCACAATCAACCAATTCGACAACTAAAGTACTtaaca
aaatttcaataattcaaaaaatggaaactCGCACCATTGACCCGGCTGTA
AACAGTCTCATGAATCAAATGCAAGATTTGATAAACTATGCTACTGAACA
GCTTAACAACATCCAGAAGAACCATTATAGTTTTGatggtGCTTCTAAGT
CGTTGGACAATATTCCTGTTGGTGTCCCGATTAGCCAAGTCAcatttgcA
CGTCAGCTGTTTTTGCACAGAGCCAGCACAATTCAGAACGCTGACTATTC
TGATGCTGCTTTGGGGTTCTGGATCAAGCACGATGGGATCGTTCCGCCCA
GGGAAAGACGTAATGAAGGGGAGAATGTAAGCGGAAGGGGACGTGGTGGC
CGAAGAGGTGGTCGTGTTGGTCGTGGCGGTGGACGGGTGGGTGGCGAGGA
AGAACCGCGCCGCAGAGGTCGATCTCCCTCGAGAAGAGCTCGATCGCGGT
CTCGTCGGAGAACTTGCACACCGTGCAGCCGCCATAGACGACGATGCagc
cattaaatgattgaatttcttttttcaaatctgATTTCTGCACCATTTCT
CATTTTAGATTCACCACGACCACAATCAACCAATTCGACAACTAAAGTAC
TtaacaaaatttcaataattcaaaaaatggaaactCGCACCATTGACCCG
GCTGTAAACAGTCTCATGAATCAAATGCAAGATTTGATAAACTATGCTAC
TGAACAGCTTAACAACATCCAGAAGAACCATTATAGTTTTGatggtGCTT
CTAAGTCGTTGGACAATATTCCTGTTGGTGTCCCGATTAGCCAAGTCAca
tttgcACGTCAGCTGTTTTTGCACAGAGCCAGCACAATTCAGAACGCTGA
CTATTCTGATGCTGCTTTGGGGTTCTGGATCAAGCACGATGGGATCGTTC
CGCCCAGGGAAAGACGTAATGAAGGGGAGAATGTAAGCGGAAGGGGACGT
GGTGGCCGAAGAGGTGGTCGTGTTGGTCGTGGCGGTGGACGGGTGGGTGG
CGAGGAAGAACCGCGCCGCAGAGGTCGATCTCCCTCGAGAAGAGCTCGAT
CGCGGTCTCGTCGGAGAACTTGCACACCGTGCAGCCGCCATAGACGACGA
TGCagccattaaatgattgaatttcttttttcaaatctgATTTCTGCACC
ATTTCTCATTTTAGATTCACCACGACCACAATCAACCAATTCGACAACTA
AAGTACTtaacaaaatttcaataattcaaaaaatggaaactCGCACCATT
GACCCGGCTGTAAACAGTCTCATGAATCAAATGCAAGATTTGATAAACTA
TGCTACTGAACAGCTTAACAACATCCAGAAGAACCATTATAGTTTTGatg
gtGCTTCTAAGTCGTTGGACAATATTCCTGTTGGTGTCCCGATTAGCCAA
GTCAcatttgcACGTCAGCTGTTTTTGCACAGAGCCAGCACAATTCAGAA
CGCTGACTATTCTGATGCTGCTTTGGGGTTCTGGATCAAGCACGATGGGA
TCGTTCCGCCCAGGGAAAGACGTAATGAAGGGGAGAATGTAAGCGGAAGG
GGACGTGGTGGCCGAAGAGGTGGTCGTGTTGGTCGTGGCGGTGGACGGGT
GGGTGGCGAGGAAGAACCGCGCCGCAGAGGTCGATCTCCCTCGAGAAGAG
CTCGATCGCGGTCTCGTCGGAGAACTTGCACACCGTGCAGCCGCCATAGA
CGACGATGCagccattaaatgattgaatttcttttttcaaatctgATTTC
TGCACCATTTCTCATTTTAGATTCACCACGACCACAATCAACCAATTCGA
CAACTAAAGTACTtaacaaaatttcaataattcaaaaaatggaaactCGC
ACCATTGACCCGGCTGTAAACAGTCTCATGAATCAAATGCAAGATTTGAT
AAACTATGCTACTGAACAGCTTAACAACATCCAGAAGAACCATTATAGTT
TTGatggtGCTTCTAAGTCGTTGGACAATATTCCTGTTGGTGTCCCGATT
AGCCAAGTCAcatttgcACGTCAGCTGTTTTTGCACAGAGCCAGCACAAT
TCAGAACGCTGACTATTCTGATGCTGCTTTGGGGTTCTGGATCAAGCACG
ATGGGATCGTTCCGCCCAGGGAAAGACGTAATGAAGGGGAGAATGTAAGC
GGAAGGGGACGTGGTGGCCGAAGAGGTGGTCGTGTTGGTCGTGGCGGTGG
ACGGGTGGGTGGCGAGGAAGAACCGCGCCGCAGAGGTCGATCTCCCTCGA
GAAGAGCTCGATCGCGGTCTCGTCGGAGAACTTGCACACCGTGCAGCCGC
CATAGACGACGATGCagccattaaatgattgaatttcttttttcaaatct
gATTTCTGCACCATTTCTCATTTTAGATTCACCACGACCACAATCAACCA
ATTCGACAACTAAAGTACTtaacaaaatttcaataattcaaaaaatggaa
actCGCACCATTGACCCGGCTGTAAACAGTCTCATGAATCAAATGCAAGA
TTTGATAAACTATGCTACTGAACAGCTTAACAACATCCAGAAGAACCATT
ATAGTTTTGatggtGCTTCTAAGTCGTTGGACAATATTCCTGTTGGTGTC
CCGATTAGCCAAGTCAcatttgcACGTCAGCTGTTTTTGCACAGAGCCAG
CACAATTCAGAACGCTGACTATTCTGATGCTGCTTTGGGGTTCTGGATCA
AGCACGATGGGATCGTTCCGCCCAGGGAAAGACGTAATGAAGGGGAGAAT
GTAAGCGGAAGGGGACGTGGTGGCCGAAGAGGTGGTCGTGTTGGTCGTGG
CGGTGGACGGGTGGGTGGCGAGGAAGAACCGCGCCGCAGAGGTCGATCTC
CCTCGAGAAGAGCTCGATCGCGGTCTCGTCGGAGAACTTGCACACCGTGC
AGCCGCCATAGACGACGATGCagccattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015666XLOC_015666Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027746-exon-sc0000644-1491911889:10175..10367TCONS_00027746-exon-sc0000644-1491911889:10175..10367Clytia hemisphaericaexon
TCONS_00027746-exon-sc0000644-1510915933:10175..10367TCONS_00027746-exon-sc0000644-1510915933:10175..10367Clytia hemisphaericaexon
TCONS_00027746-exon-sc0000644-1575043694:10175..10367TCONS_00027746-exon-sc0000644-1575043694:10175..10367Clytia hemisphaericaexon
TCONS_00027746-exon-sc0000644-1491911889:11364..11462TCONS_00027746-exon-sc0000644-1491911889:11364..11462Clytia hemisphaericaexon
TCONS_00027746-exon-sc0000644-1510915933:11364..11462TCONS_00027746-exon-sc0000644-1510915933:11364..11462Clytia hemisphaericaexon
TCONS_00027746-exon-sc0000644-1575043694:11364..11462TCONS_00027746-exon-sc0000644-1575043694:11364..11462Clytia hemisphaericaexon
TCONS_00027746-exon-sc0000644-1491911889:11605..11649TCONS_00027746-exon-sc0000644-1491911889:11605..11649Clytia hemisphaericaexon
TCONS_00027746-exon-sc0000644-1510915933:11605..11649TCONS_00027746-exon-sc0000644-1510915933:11605..11649Clytia hemisphaericaexon
TCONS_00027746-exon-sc0000644-1575043694:11605..11649TCONS_00027746-exon-sc0000644-1575043694:11605..11649Clytia hemisphaericaexon
TCONS_00027746-exon-sc0000644-1491911889:11823..11879TCONS_00027746-exon-sc0000644-1491911889:11823..11879Clytia hemisphaericaexon
TCONS_00027746-exon-sc0000644-1510915933:11823..11879TCONS_00027746-exon-sc0000644-1510915933:11823..11879Clytia hemisphaericaexon
TCONS_00027746-exon-sc0000644-1575043694:11823..11879TCONS_00027746-exon-sc0000644-1575043694:11823..11879Clytia hemisphaericaexon
TCONS_00027746-exon-sc0000644-1491911889:12322..12721TCONS_00027746-exon-sc0000644-1491911889:12322..12721Clytia hemisphaericaexon
TCONS_00027746-exon-sc0000644-1510915933:12322..12721TCONS_00027746-exon-sc0000644-1510915933:12322..12721Clytia hemisphaericaexon
TCONS_00027746-exon-sc0000644-1575043694:12322..12721TCONS_00027746-exon-sc0000644-1575043694:12322..12721Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027746-proteinTCONS_00027746-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000644supercontigsc0000644:10175..12721 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.303229	0	0	0	0.163568	0	0.0779696	0.145988	0.051105	0.0633018	0	0	0.121001	0	0.0344366	0	0.0455265	0.0933264	0	0	0	0	0	0.126435	0	0.116223	0	0	0	0.0685803
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027746 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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