TCONS_00027727 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027727
Unique NameTCONS_00027727
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027727 ID=TCONS_00027727|Name=TCONS_00027727|organism=Clytia hemisphaerica|type=transcript|length=2498bp
aaaaaaaattattatgcGGTAATAGTAGTAATACAATCactaaacaaaaa
caaaagtatcAATCTGTAGAAAAAGACTGGGTTGTGAGCATGGTATTGAA
AGTTGAAACAATTTTATTGAGAACGTTTAATTGAATGGGATCTAATTAAT
AAACATTATGATCATTGCAACCAAATTAAATTAAGAAGAGATCATCAGCA
GTACGGAGGGAGAGTTATtttgttacaagaaaaaatatCTCTGGATACGT
ATATTATGACAACTTTGATGATGAATATGTCAATTGaactgaaaaaatat
ttcttattctTTTGGTGGTCGACCCTTTGTTGTTGTTGGCTACCATTTTT
ATCATGCATTCAAGCTCTTTCACAGgAAGGGATGACGATTGAACAAGATT
CGTATGGTGTCGATTTAAATACACTAAAACATTATGAAATCGTATATCCA
ATTGAATTGGAATCAACACAAGCATATACCAAACACTACCAGATATCGGC
GTTTGGACAAAGCTACGATATATTTATTAAACAAAACGATATTTTAGATA
GACGAGAAGTCAATGGCACTACTCAAGATAATTTGAACAATAATATTTAT
GTAGAAtatatagataggaataattcATATCAAGGCAAATATTGGAAGCC
AAATAACTGCTTTTATAATGGTCCATCAGTGAACGATGAATCTCTTTATT
TGGTTCTGGATTATTGCGATGGTTTGGAAGGAATGATTGAGGATCAGAAC
ACTACACTATTTATTGAACCCATCAAAACACAAAACGACACTACTACATC
ATCCACAACCACCACCTCTAACCCATATCGAAAACATTTGGTCTACAGGA
GCTCTGATGTCAAACATAAATCAAAACTAATCGTAGATCGCACCGAAAAA
GAACCCGCCATTGATTTTCGTCTTCACGCATTATCCTCGAGGCGTCGTCA
ACGGAGATCTGGGTACCAATCATTCTTATACGTTATCAACAGGTCTAACA
GAAAAGTTCAGATATACTATTACGATTTGAAGGATCGGTTAATACCATTC
ATTTTACTGCTACCGAACGAAGGGCGAGGTATCAATACATTTGAAGCCAC
TAAATGGGTAGTGAAGGATGATAGAAGTGATCAAATCTTCCATTTGAACG
GACGCAGTGATTACACATCAACTGTCAATAGTCAAGATAAAAGATACGAA
TTAGTCATTACTGTACCTCCGGGTACAGTGTTCAATGACGCGACGAGTGA
GACAAACGAAGTCGGTGGTGCCGACTACTACATTGAAGTCATGATCCTAG
CTGATAAAAGTATGGTTGACtatcataaaaaaacacacatTGAAAAATAT
CTCAACACCATGAACCAAATCGTTGCTGGAATATTCAAACATAAAAGTTT
GGGCTCACGGATACACTACAAagtcactaaaatagttttgctGGAAAGTA
ATGACATTGGTTTTTCAGTTTACAAAGGGAATCCTTCACGAACGCTACGC
TCAGCATGTGAATATACAACATCGTTAAAACACAGTGATGAAAAACATCC
TGATCATTTTGATGTCGCAATCGCAATCACAAGGAAACAATTTGGGCCAT
CTGGATATGCTCAAATGTACAGTATGTGTTCCAATAGAAGAAGTTGTGCC
ATTGTCAATGATGAAGGTCTGACGTCATCATTCATCGTGGCCCACGAAGT
CGCTCATCTGTTAGGTTTAGATCATGATGGTGAAGGGGACTCCAGTCGTT
GTAAGGATGACCAATCACGTGGTTCAGTCATGGCACCTGTCATTGTATCA
AGCTACTCGCGTTATCATTGGTCCTCGTGTAGTAGAGAAGTCCTTAAAGT
CAACATTGGGTATTTCAGTTGTCTTGAGAACAATCCCAATAAACAAAAGG
AACAAGTCTCCAACAAACTACCAGGATCTTCATACACCATCGATGAACAA
TGTAGAATGTCACATCAAGGTTCATCGAAATGCACAACATTTGATTTCAA
TCCTTGTCATCGGTTATGGTGTAGTTCAACCGAACGGAAGTGTATATCAC
GTGGTCCAGCACTTAGTGGAACTGTCTGTGGGAAAAATAAGttttgcTTC
AAAGGAGAATGTGTTGAAGAAGAAGATAACCAAACTACAAAATTGACCAC
TAAACGAATCGTCCATGGACAATGGAGCCGATGGACTTCATGGTCCAGTT
GCTCACAAAGCTGTGGCGTCGGTCTGCGGTTCCGAAGCCGCGATTGTGAT
AGTCCAAGgcCAGGTCCAAGAGGTCGTGATTGTTCAGGTCAAAGGAAAGA
GATGGATATATGCAGTACACAGCCTTGTCGTTTGATGAAGAGCTATCAAA
CCATACTAGATGAACAATGTTCCAGTATAAGAGACGAAAGATGGATTCGA
TATAAAGATCAAGACTTCGAAACCAGATTGAAGGCACCACGTAATAACTT
GAATTGCACTTTTGAAGACGGTATGTGTAATTGGCAGAAAGAAGCGAT
Run BLAST on NCBI

transcript from alignment at sc0000642:145910..155263-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027727 ID=TCONS_00027727|Name=TCONS_00027727|organism=Clytia hemisphaerica|type=transcript|length=9354bp|location=Sequence derived from alignment at sc0000642:145910..155263- (Clytia hemisphaerica)
AAAAAAAATTATTATGCGGTAATAGTAGTAATACAATCACTAAACAAAAA
CAAAAGTATCAATCTGTAGAAAAAGACTGGTTAGTCTCTTTAAATACTGT
GTATATACTGTGCGTTTTTATTTTGTTTGACCATTCTAACGGTCAAGTCA
GTCACATCTCATCTCTCAATCGTTCATCAGATCAGTTGAACGAACAGGAA
AGAAATTTTTTTGAACGTTATGTGTAAATTGAGATGAACCGTTTAGATTA
CATATTATCGATTTTAAAACAGCTTATCTTTCATCGAGGGATGGTACTAA
AGCCTCATAAGAACGTTATTTTGCAAGTTGGACTACCATTTTCAGGGGTT
TTGCTTTGTTTTTGGTAGGCTGGTGATTCTAAGCCGGCGAATTCTTAGCT
AGCGCAGTGTATTGATTGGCGTAAATATGTACTTGAGGCAGCGAACCGAA
CTTTTCGAATGGTGAATTGTAATTTTTTTCGTGCCTTGGACCGGCGTTCG
TTGGTTCAAAATAAGACCCCAGTATTTTATATTTGGAAACTTGAACTACT
ATTTTTTTAGTATACCATATCTATCAGAATCTCTTCGGTACTGGAACCTC
GAGTCGATTGGGAGTATTTGGACAAATTGTTTCGGGATCTAGATGTATCT
TTTATAAATCCTTGTATTTCTTGTTTTTCATAGGGTTGTGAGCATGGTAT
TGAAAGTTGAAACAATTTTATTGAGAACGTTTAATTGAATGGGATCTAAT
TAATAAACATTATGATCATTGCAACCAAATTAAATTAAGAAGAGATCATC
AGCAGTACGGAGGGAGAGTTATTTTGTTACAAGAAAAAATATCTCTGGAT
ACGTATATTATGACAACTTTGATGATGAATATGTCAATTGAACTGAAAAA
ATATTTCTTATTCTTTTGGTGGTCGACCCTTTGTTGTTGTTGGCTACCAT
TTTTATCATGCATTCAAGCTCTTTCACAGGTAAGAATTCTCTTAATGCTC
GTGCGGCCGCATTAGGTAGGTTTAGGTACGGCTCATGTGCGGAGCTGTGA
TAAGGCTACGTAGCTTAAATAACTAGATGAAAGCGATTTCGATCCACTTT
AGAATACATTATCCACTTATTTTGTGGTAATGAGAACTTGTTTGTGGTTC
CACTTCAAGTCAAGAAATCTCCTTACTTAACTCCGTCAATTCGCTATTTT
CAACTGTTTTTAAATACTCTGACCAGTATTTATTGCTAGTGACAACCTTA
TATAGCTCTTGGGTGTCAAAGTTTCAAATATTTGAAATATCTTGGGTAGT
TATATCTTTTTTCGTCTCACGCTTAAAATACAGTAGACAAGTCTTATTGT
CTTTGGAGAAAAAGTTTGATAAACTATGAAGGTTAAGTACGTAAATTTTT
CATGACAAAAATTTCCCCCATACATTAGTTTCATCTTTATATTATATCCT
TATTGTTTCAGTCTAAAAGTGCATCAGAAAGGGTTGTCAATGAAAAACCC
AATGTCATTTCTTACCACTTCGGCGAATATAAGTTTCACATATTATTTAT
TTTTCATAGGAAGGGATGANCACTTCGGCGAATATAAATTTCACATATTA
TTTATTTTTCATAGGAAGGGATGACGATTGAACAAGATTCGTATGGTAAG
AACTTTCTACTCTATTCATCCGCCCTACGCCCTACTGTTCGATTTGCCGC
CCTTCATAACATGGTTGCGGTCCTCCCAAAATCTATTCATAATAATAACA
AGAAAATTTTCTTTGAGCAGCAAGAGAGCTTTTTCCTAAAAAACACCGAA
TCAGCAGTGCTTCATATAAACTGTTACTGTAATTATATTCATTCAATCCT
TTTTGTACGGAGGAAATTTCCTGCCACCTACAATGTTTGTCACCTATACG
GAAAGGGTTTTAAGACGGAAAGCGGAAATGTTCATTCTTCGTTGAACAGA
TAGTTTTTCCTACGTCCTATGTAGGTATACGAACTTAACATCCGTTGATT
CTATTGCAGGTGTCGATTTAAATACACTAAAACATTATGAAATCGTATAT
CCAATTGAATTGGAATCAACACAAGCATATACCAAACACTACCAGGTATG
AAACTCCACATTCACTTCACTGGTTTCCATGGTAACTTGTTTGAAAACGA
GGCTCATCACTGGAGAGAGCCATAATTCGTTTGTTATCCTATTCAACTCT
CTAATCGGATAAAATTGGGATGTCTGTTTAAAAAAAAAAGATAATAGGAA
AAGATTACGACGTTTTCAGATCTGTCTGTAATTTCCACCCCGGTAATCTG
TTAGGTCAATATTATGGTAAAATATGAAAGAAAAAGTTTTACTTCCAATT
TCTGCAAAGACCTAAATATATCTTGTGTGAGGAGTTTCCACGAGAAAGTT
TATTTTTGTTGATCCTCTGTATAGCTTACTAATCCTAAAATCTCATATTC
CCTTATTGTTTGTTTACTTTCTAGATATCGGCGTTTGGACAAAGCTACGA
TATATTTATTAAACAAAACGATATTTTAGATAGACGAGAAGTCAATGGCA
CTACTCAAGATAATTTGAACAATAATATTTATGTAGAATATATAGATAGG
AATAATTCATATCAAGGCAAATATTGGAAGCCAAATAACTGCTTTTATAA
TGGTCCATCAGTGAACGATGAATCTCTTTATTTGGTTCTGGATTATTGCG
ATGGTTTGGTAAGAATCTTGTTTGTTTTTCACCCACACCAATAATTTCAT
TGTGGTATCCCTTCATAAACAATAAAACGTGAGAGAATCTAAATCCTTCA
ATCCGGGTTAATCTGAAATCTAATCTAATCTAATGCGATTCCCACTACAA
AAGAAATCTGTATCTCCTCAAACGCCCACGGGCGGTTTTCATTTTCTGAA
AAATCTTGCCGTCTCTTCTCTGCGAAAAAGAACAAACTCTTCTTCTTCAG
GCTCCAGAGAAGAATCATTTAAATTTTTTTAAGATTTTCCATCATTTATA
TTACGTATCCCTTGGAAAAACCCTTCTTCTTGAATTCTTATTAAAATGAA
AATAAAAATCCTATTCATTTATCGTAGGAAGGAATGATTGAGGATCAGAA
CACTACACTATTTATTGAACCCATCAAAACACAAAACGACACTACTACAT
CATCCACAACCACCACCTCTAACCCATATCGAAAACATTTGGTCTACAGG
AGCTCTGATGTCAAACATAAATCAAAACTAATCGTAGATCGCACCGAAAA
AGAACCCGCCATTGGTAAGTGTTTGATCTGAGACTAATAAACAGGCCCGG
CGAAAAAACTGTTAAAGTGGGGAGGCTGAAGGTACAAAATGAGATAAAAT
TCTCATTTGCTCAAAAGTGGGGAGGCTGAAGTCTCCCCAGGCACCTCGCT
TCCACCAGGCCTGATAAAAAACTTTTCTTGTCAGCTGTCTTATGTTAAAG
AAAGTGCAGCTTACATTTTATAATTTGTTATTTGACCTTGTTTGGTGTAT
ACTTATTATAGTTTATCACCAAATTTTTTTGAAATTTCGTTTAGATTTTC
GTCTTCACGCATTATCCTCGAGGCGTCGTCAACGGAGATCTGGGTACCAA
TCATTCTTATACGTTATCAACAGGTCTAACAGAAAAGTTCAGGTAAGATA
TTCATTCAAATGCTGAGAAAAGAAAATTTAGGCACTGAAGTACCTTAATT
TAGACCTAAGAGTCAATGGTTTGTTTACTGAATGACTAATTCCCAGTCCA
CTTTAGTCTTGAGTGTTTGGTCATACGCAAGTACCAATACACTTATACGT
TATAGACGATTTGTCATTATTTACGTCTACGAAACAAGAGATATAGAGTC
GCCTTATTTTTCTTCAGTTTGAGAAACACGTGGTCGAAAGTTTCCTCTGA
TTTCAAATCAAAGTTTAATGAATCTATCTAGAATAGTTACTTTCTGAAAC
AAAACTAGTCTGTAGGTACGCTTTAAATTATTTTTAATTGATTGGGTGGC
ACTATACGTGGCTGTTAAGTGGATAACTTCTCTGGACTCAACGTCGTCAA
AAATCATCAGAAAGCACCCAGTCATAAGTGTACTCGACTCTATAAAACTA
AGGCTTGAGGCTGTTTAATTGATTGGGTGACGCTGTTAAGTATACGATTT
CACAGGACTCAGCATCGTCCGAAAGCAAAGCTCAGTCAGAAGTTGATCCT
ACTCTCTAAAATTGAGGTTATTTTTTTCTTACAAAATCCCTTATTTCATT
ATTTCCTTAGATATACTATTACGATTTGAAGGATCGGTTAATACCATTCA
TTTTACTGCTACCGAACGAAGGGCGAGGTATCAATACATTTGAAGCCACT
AAATGGGTAGTGAAGGATGATAGAAGTGATCAAATCTTCCATTTGAACGG
ACGCAGTGATTACACATCAACTGTCAATAGTCAAGATAAAAGATACGAAT
TAGTCATTACTGTACCTCGTAAGTTAATCAGTGATATTTTTTCCTTAAAC
TATTTTTTGATGAGGAGTTTTTTTTAAAGTGGTACCCGCACCGAGAGCGC
TAGACTTGGACGTTTGGACACAAGTTATGTAACGACGTTTGTCGTTATGC
AAAGTTTTAACACTACAATGGCTTCCTTGCGGGTAACACTCCAATCAAAT
ACGTCGGATATAGCTTGGTCCAGGGTTTATAAAGGTCAGTGATTGGGACA
ACCATTCTTTATATCCCCTTTCTCTTTTTCCAGCGGGTACAGTGTTCAAT
GACGCGACGAGTGAGACAAACGAAGTCGGTGGTGCCGACTACTACATTGA
AGTCATGATCCTAGCTGATAAAAGTATGGTTGACTATCATAAAAAAACAC
ACATTGAAAAATATCTCAACACCATGAACCAAATCGTAAGATTATAGTAT
TTCTTACTCAGGTTAAATGACACCTTTCTTACCTTTCACAAATCAATCCC
TTGGTTTAATTAATCACGCGATGAAGCGACCGTAGTGCAGTGGTAGAGCA
TCCGGTTACGGAGCGCAAGGTTGTGCTTTCAATCCTCGGCCGGGTCATGT
CAAAGACTTCGTACTTAGCACCAGTGGCGTGGTGGGAAAATTTCTCTGGG
GTGGCCAAGGCAAATATGGCGCCCTTTTTAAAGATTTTGTGTTTTTGGCG
CCCCTCTCTATACACTCATTATGAATACAAAAAAGGGAGTGTGCGAGCGA
AGCGAGCCAGAAAATTTGGAGTTTTTGAGGTGATGAGGGGCGCCATTTTT
GTTTTTTCATTTGTCAATCTTTCGATATGGGCGCCTGAAAAATCCTTCTT
GGCGTCCCTTATTTTTTGGCGCCCCTTCTCAAAAGGACTCGGCTGGGGGG
GCCTGGCCCCCCTGGCCCCCCCTGCCACCACGCCACTGCTTAGCACACAA
ACGTTACTTGATGCCTCTCAGCTTGATGCTCAGCAATTAAGAGAAGGATC
AAGGGTAAGTGGAACAATCCAGAAAGAAAGAGGAGCCTTCGGTTCGCCTC
CGACTGTGGTCACAGACTTACTTAATCACATATTATTAATTCTTTTTAAC
TTTAATCATAGGTTGCTGGAATATTCAAACATAAAAGTTTGGGCTCACGG
ATACACTACAAAGTCACTAAAATAGTTTTGCTGGAAAGTAATGACGTAAG
CAAAGATGACTTTTTTCCTCAATAAAAATCCCTCTAAACTATAGCATCGT
ATGTACGCTGATTTTAAGTTTAAGACAGTTTTAAAAGTAATTTAGATGTA
CCTCTGGCGATATCACTTAGTGCCTAGCGGGGGGAAGGGACTATTTTTTT
GTCAGAAGTGTGTCGTATGTAACCCATGTCATAAGGAAAAAAATTTAGAT
TATACTAACTTGCTGTTTTTTGCACTTTTTTTTTAGATTGGTTTTTCAGT
TTACAAAGGGAATCCTTCACGAACGCTACGCTCAGCATGTGAATATACAA
CATCGTTAAAACACAGTGATGAAAAACATCCTGATCATTTTGATGTCGCA
ATCGCAATCACAAGGTAAATTCTAACCAGTAAATAAAACTAACCAATGAT
TGAATCCTCAATTCATTTTTTGTGACATTATAAATCGCGGCGTGATATTA
AGTACTCTGTACCAGAGTGTATCTCACGTTTATGGCTTCGTAGTACACTC
TGTGCGCATTGTCTGTTTGATAAAAAAATTTGTAAATAGCAACACTTCTC
TCGTCGTCTCCCCTGTTTCACCAACACTCCATCGCAGCGGTCGGTTTGAA
AAATCTCAAATGAGAAAAGACAGTGACAACAGACCCTCTTCGGCAATGAA
TTTTGTAATTAGCCGTAGATACTGGGTCTGTATACAGACAAGATATTAAG
AAGCTGGCATCGCCAGATGCTCTTATCGCTCTTTGGCACTCTTTCTTATA
ATCTCGAGTGGTATTTCCTAAACCTTTATTAAACTTTTCTGTTTTTGTTA
AAAATTCAATAGAAATCAACCATTTTCATCATAGGAAACAATTTGGGCCA
TCTGGATATGCTCAAATGTACAGTATGTGTTCCAATAGAAGAAGTTGTGC
CATTGTCAATGATGAAGGTCTGACGTCATCATTCATCGTGGCCCACGAAG
TCGCTCATCTGTGAGTAGTATTATTATATCTTTTTTTTTTTTTAATCTCG
ACTTCTGTTTTTTTGGGAAAATTATACAGTCAAATCTCTCTATTTCGAAC
TTCTATAATTCGATTCCTTCTGTAATTCGAACTAAAACATTGGTCCCCTC
AGCTGTAATTTAGTGTTAAATTCTCTCTGTAATTCGAATTTTTCTTAAAT
TTTTCTCGAATTAGAGAGAGTTAACTGTATGATAAACTTTCATAAATCAA
CAGAGATATTTAAGAATTACTCAGTTGATGTTTTTTTGCGAAGGGTCATC
AAGTGTAGTGTGATTAACATTTCACTAGGTTAGGTTTAGATCATGATGGT
GAAGGGGACTCCAGTCGTTGTAAGGATGACCAATCACGTGGTTCAGTCAT
GGCACCTGTCATTGTATCAAGCTACTCGCGTTATCATTGGTCCTCGTGTA
GTAGAGAAGTCCTTAAAGTCAACATTGGGTAAGAAACTTTCTATGATTTG
TCAAATCTCTCATTGAACTTCCCTATTATGTAACAAAGCAAAGAAATACT
ATTCTCAGTATTCACTGAGAAACAATAACGTTTAAAGTCTTTAAATGTGA
TACACTTTTTTAATATAAAAGAACAAACTATATGAGAACATAAGGCTTCG
ATGGCCGAATTACTAAGAACAAGTTAGGAACACTTTAAGGCTTTGCAGAG
TCTAAAACACCCATTTTCTTAGGAAAACGGTCAAAAATGTTCACAAAATG
GTGAAAATAAGAACATGCTAAGAACATTTTTAGGCTTCAAACTCGAAAAA
TTAAGAACATACGAAGGCTGCAAAAAATTAGGATGCTCTTATAAAAAACG
TGATATATCTCTGTGAGTTTTCTTATGCATTTTCACATTCCCTTCTCCAG
GTATTTCAGTTGTCTTGAGAACAATCCCAATAAACAAAAGGAACAAGTCT
CCAACAAACTACCAGGATCTTCATACACCATCGATGAACAATGTAGAATG
TCACATCAAGGTTCATCGAAATGCACAACAGTAAGTTGTCTATTTCTTCA
TTCCATCTTAACAGGTATTTTGTAAAGAATTCGAATGGCTATCTTGCAAT
ATATACCTTCCATTCTCTCATAAGTGTCGGACTTTTTATTTATATGTCGG
ACTCAAATGTCGAATAGTTTTAATACGGCATTCTGGTGCACGACGTGACA
TGGTGTTCGCTCGAATTGAAAGTCTAATTTTTCTGGAATACAGAGAGATT
CGAATTACAGAAAATTTTTAATAAGGAATATCATTAGCGGGACTTAAAAT
TAATTGAACTATCGCTCAAAGATATCAATATTTTAAGTTTGTTTTTAGTT
TGTACTTATATATCTTTACTTTTAAGTAAGATTTTCCGCCTACATCCATG
ATACTGACTATTTACTTTCTTTATTTCATTCAAGTTTGATTTCAATCCTT
GTCATCGGTTATGGTGTAGTTCAACCGAACGGAAGTGTATATCACGTGGT
CCAGCACTTAGTGGAACTGTCTGTGGGAAAAATAAGGTAATTCAGTAAAT
AAAAGTCTTTTACTGGTCTTGCTTTTATTTTCACCCCTGTTTCACAGCCC
CGATGGAACTTTTTTCTTCAATTGGGATAAAATTACTATTGCAATCCCAA
TTGGGATACTTTTCCAAGGTTAAAAAAATCCAGTGGGGTTGGTTTCGGAG
TGAAATTTTTAAGCATTAAATTTCGAATAGGGATGCAATCAAAAATTATT
TCACATTGGGCTGGGGTCCCAGCGGGTCTGTGACACCGGGGTGTTGTAAT
AATGAAGATTGTAAGAATCTGACAATGAGTCAACATTGAGTGTGTTGACT
TTATTGAAAATGTTTTTTTCTTCGGCATTGAACCAATCAAAATTAATGCT
TTCTTTTTTCTTCAGTTTTGCTTCAAAGGAGAATGTGTTGAAGAAGAAGA
TAACCAAACTACAAAATTGACCACTAAACGAATCGTCCATGGACAATGGA
GCCGATGGACTTCATGGTCCAGTTGCTCACAAAGCTGTGGCGTCGGTCTG
CGGTTCCGAAGCCGCGATTGTGATAGTCCAAGGTAATTATGGTTCATTTT
TCGTTTTTTTAATACTCTGTAAAATTCTGTTCTGCGAAATACCAATCAGA
GACAGGCGGTCAAACCGAAATTTTGCAAATCATACATCTCCAAATATCCA
TATCAACATGGTCAAAATTTCAAGTTCATAGCACTTGTCAATTTTGAGAT
TTTAAGAGGGGGCCTTATACTCGAAGGGTTAAGGTTTACACTTATTTCTT
CAAATTTTTCTTACGCTTACTTTTTTTTTCGTTTTAGGCCAGGTCCAAGA
GGTCGTGATTGTTCAGGTCAAAGGAAAGAGATGGATATATGCAGTACACA
GCCTTGTCGTTTGATGAAGAGCTATCAAACCATACTAGATGAACAATGTT
CCAGTATAAGAGACGAAAGATGGATTCGATATAAAGATCAAGACTTCGAA
ACCAGATGTATGTTGAATTAAATCTTTATCAAAGGGCAGTCCGTTTATCA
AGACAATTTCCATTGAGATTTAGACTTGAGTGTTAGCATTCCATTGCTAC
ATATTAGCTAAACACACATACATACAGCATTGACTAAAAAAGAGTATTCA
TTCTTAACATTAAAATTTTACTTTTAATTCACAGTGAAGGCACCACGTAA
TAACTTGAATTGCACTTTTGAAGACGGTATGTGTAATTGGCAGAAAGAAG
CGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015648XLOC_015648Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027727-exon-sc0000642-1575043694:155185..155263TCONS_00027727-exon-sc0000642-1575043694:155185..155263Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1575043694:154285..154580TCONS_00027727-exon-sc0000642-1575043694:154285..154580Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1575043694:153619..153649TCONS_00027727-exon-sc0000642-1575043694:153619..153649Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1575043694:153169..153254TCONS_00027727-exon-sc0000642-1575043694:153169..153254Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1575043694:152556..152789TCONS_00027727-exon-sc0000642-1575043694:152556..152789Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1575043694:152000..152186TCONS_00027727-exon-sc0000642-1575043694:152000..152186Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1575043694:151622..151719TCONS_00027727-exon-sc0000642-1575043694:151622..151719Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1575043694:150796..151003TCONS_00027727-exon-sc0000642-1575043694:150796..151003Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1575043694:150379..150530TCONS_00027727-exon-sc0000642-1575043694:150379..150530Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1575043694:149619..149702TCONS_00027727-exon-sc0000642-1575043694:149619..149702Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1575043694:149250..149377TCONS_00027727-exon-sc0000642-1575043694:149250..149377Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1575043694:148654..148779TCONS_00027727-exon-sc0000642-1575043694:148654..148779Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1575043694:148186..148335TCONS_00027727-exon-sc0000642-1575043694:148186..148335Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1575043694:147634..147763TCONS_00027727-exon-sc0000642-1575043694:147634..147763Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1575043694:147128..147229TCONS_00027727-exon-sc0000642-1575043694:147128..147229Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1575043694:146582..146748TCONS_00027727-exon-sc0000642-1575043694:146582..146748Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1575043694:146157..146326TCONS_00027727-exon-sc0000642-1575043694:146157..146326Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1575043694:145910..145979TCONS_00027727-exon-sc0000642-1575043694:145910..145979Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1510915933:155185..155263TCONS_00027727-exon-sc0000642-1510915933:155185..155263Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1510915933:154285..154580TCONS_00027727-exon-sc0000642-1510915933:154285..154580Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1510915933:153619..153649TCONS_00027727-exon-sc0000642-1510915933:153619..153649Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1510915933:153169..153254TCONS_00027727-exon-sc0000642-1510915933:153169..153254Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1510915933:152556..152789TCONS_00027727-exon-sc0000642-1510915933:152556..152789Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1510915933:152000..152186TCONS_00027727-exon-sc0000642-1510915933:152000..152186Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1510915933:151622..151719TCONS_00027727-exon-sc0000642-1510915933:151622..151719Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1510915933:150796..151003TCONS_00027727-exon-sc0000642-1510915933:150796..151003Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1510915933:150379..150530TCONS_00027727-exon-sc0000642-1510915933:150379..150530Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1510915933:149619..149702TCONS_00027727-exon-sc0000642-1510915933:149619..149702Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1510915933:149250..149377TCONS_00027727-exon-sc0000642-1510915933:149250..149377Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1510915933:148654..148779TCONS_00027727-exon-sc0000642-1510915933:148654..148779Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1510915933:148186..148335TCONS_00027727-exon-sc0000642-1510915933:148186..148335Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1510915933:147634..147763TCONS_00027727-exon-sc0000642-1510915933:147634..147763Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1510915933:147128..147229TCONS_00027727-exon-sc0000642-1510915933:147128..147229Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1510915933:146582..146748TCONS_00027727-exon-sc0000642-1510915933:146582..146748Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1510915933:146157..146326TCONS_00027727-exon-sc0000642-1510915933:146157..146326Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1510915933:145910..145979TCONS_00027727-exon-sc0000642-1510915933:145910..145979Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1491911889:155185..155263TCONS_00027727-exon-sc0000642-1491911889:155185..155263Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1491911889:154285..154580TCONS_00027727-exon-sc0000642-1491911889:154285..154580Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1491911889:153619..153649TCONS_00027727-exon-sc0000642-1491911889:153619..153649Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1491911889:153169..153254TCONS_00027727-exon-sc0000642-1491911889:153169..153254Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1491911889:152556..152789TCONS_00027727-exon-sc0000642-1491911889:152556..152789Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1491911889:152000..152186TCONS_00027727-exon-sc0000642-1491911889:152000..152186Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1491911889:151622..151719TCONS_00027727-exon-sc0000642-1491911889:151622..151719Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1491911889:150796..151003TCONS_00027727-exon-sc0000642-1491911889:150796..151003Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1491911889:150379..150530TCONS_00027727-exon-sc0000642-1491911889:150379..150530Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1491911889:149619..149702TCONS_00027727-exon-sc0000642-1491911889:149619..149702Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1491911889:149250..149377TCONS_00027727-exon-sc0000642-1491911889:149250..149377Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1491911889:148654..148779TCONS_00027727-exon-sc0000642-1491911889:148654..148779Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1491911889:148186..148335TCONS_00027727-exon-sc0000642-1491911889:148186..148335Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1491911889:147634..147763TCONS_00027727-exon-sc0000642-1491911889:147634..147763Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1491911889:147128..147229TCONS_00027727-exon-sc0000642-1491911889:147128..147229Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1491911889:146582..146748TCONS_00027727-exon-sc0000642-1491911889:146582..146748Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1491911889:146157..146326TCONS_00027727-exon-sc0000642-1491911889:146157..146326Clytia hemisphaericaexon
TCONS_00027727-exon-sc0000642-1491911889:145910..145979TCONS_00027727-exon-sc0000642-1491911889:145910..145979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000642supercontigsc0000642:145910..155263 -
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00027727 vs. Swiss-Prot (Human)
Match: ATS3 (A disintegrin and metalloproteinase with thrombospondin motifs 3 OS=Homo sapiens GN=ADAMTS3 PE=2 SV=4)

HSP 1 Score: 244.202 bits (622), Expect = 2.205e-67
Identity = 156/425 (36.71%), Postives = 240/425 (56.47%), Query Frame = 1 
Query: 1222 GTVFNDATSETNE-------VGGADYYIEVMILADKSMVDYHKKTHIEKYLNTMNQIVAGIFKHKSLGSRIHYKVTKIVLLESNDIGFSVYKGNPSRTLRSACEYTTSLKHSDEKHPDHFDVAIAITRKQFGPSG---YAQMYSMCSNRRSCAIVNDEGLTSSFIVAHEVAHLLGLDHDGEGDSSRCKDDQSRGSVMAPVIVXXXXXXXXXXXXXEVLKVNIGYFSCLENNPNKQKEQVSNKLPGSSYTIDEQCRMSHQ-GSSKCTTF-DFNPCHRLWCSSTERKCI---SRGPALSGTVCGKNKFCFKGECVEEEDNQTTKLTTKRIVHGXXXXXXXXXXXXXXXGVGLRFRSRDCDSPRPGPRGRDCSGQRKEMDICSTQPCRLMKSYQTILDEQCSSIRD--------ERWIRYKDQDFETR 2427
            GTV+ +   + NE        G  DY IEV++  D S+V +H K H++ YL T+  IV  I+  +SLG  I+  + ++++L        + +GNPSR+L + C + +  + SD  H +H D AI +TR+ FGP+G   YA +  MC   RSC + +++G +S+F+VAHE  H+LG++HDG+G+  RC D+ + GSVMAP++ +++ RYHWS CS + LK  I  + CL ++P         +LPG +Y++DEQCR     G   CT F  F+PC +LWCS  +        +GP L GT C   K+C+KG C+ +  NQ  +        G W  WT + SCS++CG G+RFR+R C++P P   G+DC G   E  +C+T+ C+  K ++    +QC               W+ Y+  D + R
Sbjct:  231 GTVYGNIHQQLNETMRRRRHAGENDYNIEVLLGVDDSVVRFHGKEHVQNYLLTLMNIVNEIYHDESLGVHINVVLVRMIMLGYAKSISLIERGNPSRSLENVCRWASQQQRSDLNHSEHHDHAIFLTRQDFGPAGMQGYAPVTGMCHPVRSCTLNHEDGFSSAFVVAHETGHVLGMEHDGQGN--RCGDETAMGSVMAPLVQAAFHRYHWSRCSGQELKRYIHSYDCLLDDPFDHDWPKLPELPGINYSMDEQCRFDFGVGYKMCTAFRTFDPCKQLWCSHPDNPYFCKTKKGPPLDGTECAAGKWCYKGHCMWKNANQQKQ-------DGNWGSWTKFGSCSRTCGTGVRFRTRQCNNPMPINGGQDCPGVNFEYQLCNTEECQ--KHFEDFRAQQCQQRNSHFEYQNTKHHWLPYEHPDPKKR 644
The following BLAST results are available for this feature:
BLAST of TCONS_00027727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ATS32.205e-6736.71A disintegrin and metalloproteinase with thrombosp... [more]
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