TCONS_00044758-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00044758-protein
Unique NameTCONS_00044758-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length106

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00044758-protein ID=TCONS_00044758-protein|Name=TCONS_00044758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MRSCIEVDCTENIRAFLEHIGFQFDHETILRGYLFKKGRMKICVSRLHKI
PEKGVFQNAMQMTDSYLVEVTLNTLVQQDSLCEDMKAFAEYLKPIVVLDK
LDQKRL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_028370XLOC_028370Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00044758TCONS_00044758Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019095Mediator_Med18_met/fun
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019095Mediator complex, subunit Med18, metazoa/fungiPFAMPF09637Med18coord: 1..104
e-value: 6.8E-12
score: 45.7

Blast
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BLAST of TCONS_00044758-protein vs. Swiss-Prot (Human)
Match: MED18 (Mediator of RNA polymerase II transcription subunit 18 OS=Homo sapiens GN=MED18 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.650e-25
Identity = 45/105 (42.86%), Postives = 71/105 (67.62%), Query Frame = 0 
Query:    2 RSCIEVDCTENIRAFLEHIGFQFDHETILRGYLFKKGRMKICVSRLHKIPEKGVFQNAMQMTDSYLVEVTLNTLVQQDSLCEDMKAFAEYLKPIVVLDKLDQKRL 106
            R+C+++  +EN+  FL  +GF+ DHE + +G+LF+KG MKI V ++ +I   G   +   ++ SYLVE+++     QD + +DMK FAE LKP+V L+K+D KRL
Sbjct:  103 RNCVDIATSENLTDFLMEMGFRMDHEFVAKGHLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSYLVELSVVAPAGQDMVSDDMKNFAEQLKPLVHLEKIDPKRL 207
The following BLAST results are available for this feature:
BLAST of TCONS_00044758-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED182.650e-2542.86Mediator of RNA polymerase II transcription subuni... [more]
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