TCONS_00027668 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027668
Unique NameTCONS_00027668
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027668 ID=TCONS_00027668|Name=TCONS_00027668|organism=Clytia hemisphaerica|type=transcript|length=389bp
CAACACCCcaaaaacgaaattttgatcaaaaatctTTCCATTTAGTGTTA
AATCATAGATcttaatagatcttatcggagtttttgatttttctaaaaaa
aacgatgcattgtgggattgtttcggggtaTTATTATCCCAAAATGCATT
GCTGttttagaaaaaccaaaaactccgataaggtctattaagCTCCATGC
GAGTACTGAAGGATTTTACTGGGTCAGAAGACAAAAAGATCCTAATCCAA
AGCGATACTCCATCTACATTTTCCTTTTCATCGGTGCAGAGATAGCATAT
ACtctcttttataagaaccagtaagttTTTGTTGAGACTGcaagtgttct
tatttttgcattttgagCTTCTCCAACCTCTATAACCCA
Run BLAST on NCBI

transcript from alignment at sc0000638:150214..150602

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027668 ID=TCONS_00027668|Name=TCONS_00027668|organism=Clytia hemisphaerica|type=transcript|length=389bp|location=Sequence derived from alignment at sc0000638:150214..150602 (Clytia hemisphaerica)
TGGGTTATAGAGGTTGGAGAAGctcaaaatgcaaaaataagaacacttgC
AGTCTCAACAAAaacttactggttcttataaaagagaGTATATGCTATCT
CTGCACCGATGAAAAGGAAAATGTAGATGGAGTATCGCTTTGGATTAGGA
TCTTTTTGTCTTCTGACCCAGTAAAATCCTTCAGTACTCGCATGGAGctt
aatagaccttatcggagtttttggtttttctaaaaCAGCAATGCATTTTG
GGATAATAAtaccccgaaacaatcccacaatgcatcgttttttttagaaa
aatcaaaaactccgataagatctattaagATCTATGATTTAACACTAAAT
GGAAagatttttgatcaaaatttcgtttttgGGGTGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015614XLOC_015614Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027668-exon-sc0000638-1491911889:150214..150602TCONS_00027668-exon-sc0000638-1491911889:150214..150602Clytia hemisphaericaexon
TCONS_00027668-exon-sc0000638-1510915933:150214..150602TCONS_00027668-exon-sc0000638-1510915933:150214..150602Clytia hemisphaericaexon
TCONS_00027668-exon-sc0000638-1575043694:150214..150602TCONS_00027668-exon-sc0000638-1575043694:150214..150602Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000638supercontigsc0000638:150214..150602 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.394461	0	0.223165	1.09261	0.535166	0.210037	0.254804	0.238818	0.166485	0.827678	0	0.264676	0.397007	0.408396	0.336373	0.480425	1.04329	0.152689	0.41904	0	0.962759	2.50969	1.13657	1.24614	0.846464	0.377724	1.63437	0.596666	1.09382	3.34885
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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