TCONS_00027569 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00027569
Unique Name	TCONS_00027569
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2135

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000635:60446..68196+

transcript sequence

>TCONS_00027569 ID=TCONS_00027569|Name=TCONS_00027569|organism=Clytia hemisphaerica|type=transcript|length=2135bp
GTTTATCATGAGAGATAAGAAGTTTTTAGTCAGTGGGAGACAAAATACCA
AAGGATTTTCAATAATTCTCCTTGTTTATGGAGAAAAGACAAGAGTACAA
AAGATAGTATAGATATTATAAGGGGGATGACAACAGAAATTTGAAGTAAA
ATCATAAACACAGATGGACAGGAAGCAAGTGGACAAAGAAGACTTATCGT
CGATAGCTAAAGTGATGCCAAGGCCTAGTTGGCCTAGATTGGATTCTTCA
GAGCAGgaagatgaaaatgaagggACGAAAGCGATCGCTGTAGACACAGA
CTCACCTTTAGAAAAAGGGAATGATGGATGGACGGCAAGCTTACATCCTA
TAGAGAGCATAAAGCAGGCACAAGAAGATGATGTTGGTAAGGCACCAGAT
CTACCAAAACCAGAGAAGATAGAAGAggataatgatgatgatgacagCCT
GGAAACCACAGACAATGAGAGCGAGGTAGCTGAAGTTGGAGCTAACAGAG
TACACATAAGaaatcggaTGTCAATTCGGGAATTGGAAACTAGCGAACAT
GCTAAACACCGATATGCATTTTTGAGGGCGTTTGACGAAATCAAGAAGCT
TTCTCATGATCATCCTACCTACGGGGCTGACTCCTTTTGGAGCATTGCAT
CAATCAATGGCCAGCCGTTCACCTCCAAGAGATCGAAACCCCCTNTTTTG
GAGCATTGCATCAATCAATGGCCAGCCGTTCACCTACAAGAGATCGAAAC
CCCCCCAATGCAAACATGGAAAAATGTGGAGAGGACACAGCCAGCATGAA
AACGTTCTTTTTCTCCCTTGGTACCGCGCTTATCTCTTGCGATTGGAAGA
TGCTTTGGTACGACATGCTCCAGTCGACAATCTTAAAGTAGCGTTGCATT
ATTGGGATGAAACTTCACCAGAATCTTTGGCTAATGGTCTCCCACGCCTC
TTAACAGATGagtttgttgaaattgataaaaatggaAACACCATTCCCAA
CCCTCTCTTAGGATTTACTCTACCAGAAGCAATACCTCTAAATAAAGCAA
CACAAAAATACACAAAAGCAGCTCAATACACAACCTGCCGATATCCCTTC
TCTGGCCTGATGAATCCTCGAGACCCAACCAAATACACCGCAAATGCTGA
GTTCCAGAACCATTATCTTAACCTCATTCTTCGTGATCCAAAAGAGTACC
TGAATCAAAATATCATCCACTCTTTAAATGATTTGAAGGCTCCACTTGTA
CCCATCAAAGATATATACAAAGAATGCTTGGATATTGAAGACTACAACAA
GTTTTCAAATATCTCGTCAGCAGGATGCGGGAACATCTCTCTCGAGCACG
CCAGTATTAGTATGCTTCACACATTAGGTGGAAATAGTGAAGACAACTCT
GTTCAACGCGAGTTGATAGCTGGCTCCCATGGTGATTTAGGATCAAAAGA
AATGGCGGCTTTTgatcctttatttttcttgcaTATGTCAAATGTTGATC
GTATGTTTTGGATTTGGCAAGAGAAGTACCATCATACCACATCAACAATA
GTCACGAATAAGAAAGGTAGGGTCGTTTCAAAGCCTTTTAAGATAAAGGC
CAGTGGTAACGGAATCAAACCCAATCAAGGTCAAGGACCTTCCCCATCGC
AACAGGGTGAAGAAATTTTGGGTATGAGTACTTCACTACATCCATTTAAA
TTTGGAGCTCTCAAACAACCCACGGTTACCAATGACTTGATCGATATCAA
AGGGGAATTGCATTATACATACACAAGAGGCTCATTTGATAAGAAAGACC
CCTCACGTTAGGTGATTTTCAAGGCTGTACCAAACCCCCTCAAGAAAAAG
AGAGGGCATTCACATTTTGTCGACAAACATTTTATTGGAACAATCAGTAA
TAGCTTTTCTAATTGAGctaattaatttcaatttttcttactTATTTTTA
AACCTATTAAACGTCTATTTGTGTAATTTTGTAACCTACTATTAGCTTTT
TGTTGAAACCCATATTTAATTCATGATAGCACAATACAAAATCATTTGTG
ATTCactcttttttaataagaacaattttatagtGATGACTAGGCTTAAA
ATTACCGAAAGATAAGAATAATGCCGAGCCCGGAA

Run BLAST on NCBI

transcript from alignment at sc0000635:60446..68196+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00027569 ID=TCONS_00027569|Name=TCONS_00027569|organism=Clytia hemisphaerica|type=transcript|length=7751bp|location=Sequence derived from alignment at sc0000635:60446..68196+ (Clytia hemisphaerica)
GTTTATCATGAGAGATAAGAAGTTTTTAGTCAGTGGGAGACAAAATACCA
AAGGATTTTCAATAATTCTCCTTGTTTATGGAGAAAAGACAAGAGTACAA
AAGATAGTATAGATATTATAAGGGGGATGACAACAGAAATTTGAAGTAAA
ATCATAAACACAGATGGACAGGAAGCAAGTGGACAAAGAAGACTTATCGT
CGATAGCTAAAGTGATGCCAAGGCCTAGTTGGCCTAGATTGGATTCTTCA
GAGCAGGTCAGCTGTTCGAGAGCTTTTTATAGTCTTGTGAAAATTAATGC
Atctttagtagggggaaatttgttagggttcgtttttttgaggtcgctcg
acttttttagtcaaagcacttgttatacatttttggaaagctaaagggta
ggggaatcaaaataacttgggtgtcaatttttttcggacactttgttgtg
attttcggacaaatacgacggtctaagctcaatatctcgagttaggtact
gaaatcacatATAATcacaatatatcactaatcttaattttttgagagct
ttccaaaaatatacaacaggtcaccgttttctcaagctaaaattttcatt
aacttttcaccctatgattgtGGCCTgggaccgtcgtatttgtccgaaaa
tcacaccatagTGTCcgagaaaaaaattggcacccaagttattttgattg
acctaccccttagctttccaaaaatgtataacaagtactaaaaaaatcga
gcgattttacaaatttccccctactacttTTAGAAGAGGATTTTTTATCA
TGAGAGGATTTTGAAGGCATTTGTCTCTAGCCTAGATTTTCAAAACATGT
TCATaagcttttataaaaagttgtttttctgTTCTCCTAATAGTTGGGGA
GCTGGGGAAGGTCAACTATGACAGTCGTAGCAGCATGTGAAATATATATC
ATCATATAGCACTCTGTCTGATAGTTTCCAAATTTACTTGTTTGCTGTCC
GAAGTTTTCTTGTTGGTATCGATACTTTTACATGGATGTCCAATCGCTCC
TTTTTCTAAGTGAAAATTTCCGTTTTTGTCCTTATaggaagatgaaaatg
aagggACGAAAGCGATCGCTGTAGACACAGACTCACCTTTAGAAAAAGGG
AATGATGGATGGACGGCAAGCTTACATCCTATAGAGAGCATAAAGCAGGC
ACAAGAAGATGTAAGTTAGACACTTTACattcctgaaaatatttgggaAG
AGATTTTCGCGGGAAGGAAACTTTACGAAATGTTTCCATTTTGCGATAAG
TAATggagtttttcaaaatatttctcgaGAGAATTTTAATCTCGTTCTTG
TGCTTAAATTATCAGGATGTTGGTAAGGCACCAGATCTACCAAAACCAGA
GAAGATAGAAGAggataatgatgatgatgacagCCTGGAAACCACAGACA
ATGAGGTAAGTtgattttaaaaaaggggtcttgatatattataaaatata
ttgcCGGTTGTGGTTTTTTATACTTACtcttaggttccaaataaacggcc
ccccccccgcttgttaatttttcgaaaattttccaaccccccggacctta
ttaggaccccccgtttattaatctctaatcagctgtcaaagagaaggccc
cttaaattgctctaaatagcctgattttagcctatttgtgccttattttt
gggtttcagaagtacaatttccaacccccccggcaattaggtccccccgt
ttattaaaatctagaaaattttccaaccccccggaccttattaggacccc
ccgtcTATTCATCCCAaatcagctgtcaaagagaaggccccttaaaTTGC
TCTAagtagcctgattttagcctatttgtgccttatttttgggtttcaga
agtacaatttccaccccccccggcaattagggccccccgtttattaaaat
ctagaaaatttttcaacccccccacacccccccccccccccctcttattc
catcccccccccccctttttcccccccccccctttttcccccccccccct
ttttcccccccccccctttttcccccccccccctttttcccccccccccc
tttttcccccccccccctttttcccccccccccctttttccccccccccc
ctttttcccccccccccctttttcccccccccccctttttcccccccccc
cctttttcccccccccccctttttcccccccccccctttttccccccccc
ccctttttcccccccccccctttttcccccccccccctttttcccccccc
cccctttttcccccccccccctttttcccccccccccctttttccccccc
ccccctttttcccccccccccctttttcccccccccccctttttcccccc
cccccctttttcccccccccccctttttcccccccccccctttttccccc
ccccccctttttcccccccccccctttttcccccccccccctttttcccc
cccccccctttttcccccccccccctttttcccccccccccctttttccc
ccccccccctttttcccccccccccctttttcccccccccccctttttcc
cccccccccctttttcccccccccccctttttccaacccccccccccccc
gtttattcgaacgcccccgtttatttggaacctaagagtactaaGGGAAC
CTAAAAAACACCAATTTATATCTCTTCGGCTTTTCTCTCTCTTGTATTGC
CAGTTGCCACCTCattatagatcttatcggagtttttgatttttctaaaa
aagcgatgcattgtgggattgtttcaagagtattacaatagaattccctc
gagggattcctaagagatttccattgtaatactcccgaaacaatcccaca
atgcatcgcttttttagaaaaatcaaaatctccgataaggtctattacgg
agaaatggaaaattaaaaagattatTTTCTACGTCGAGCactctaattta
ttttaaatcttTGATCAGGATTTTCGTAACTTCCTCAGATATAAAGTTAC
AGTTAAAATGgctaaaatggccaaaaatgaCCAAGCATAGTGGAAACCTA
ATTTATAGGACTGTAACTTTTTTATCAGAGGAAAAATCAGAGCATAGAGC
GGACAAATTTGTatgtaaaataaaatcctcataattttTGCCAACTTTTA
TGACTTGTATACTTtatatttcaatctcaaaaacctTTTCACTCATCTtc
tattgattgaacagagaattttaatcttatttcaatAACTTTAAGCCTAG
TTTAGATAACGAGCTTTGAGGGTTTTActttatttaaatttaaaaatttg
tccgctttttttgggacacgcTGTTTAGTAATAATGATTGCTGAGAAGAT
GATATAAAAAGATACTCATGAGACAGACTTCAGTACGAACTTGTTTATTC
TTATTTAGAGCGAGGTAGCTGAAGTTGGAGCTAACAGAGTACACATAAGG
TAATTGGCTGTAAAGCTACTGTTATTTAGATTTCTTGAATTTCGATTAGT
TGAAATCATAGAAACGGCTggggttgtaggggttcgaaataccgaaAGAC
ACCGTCACACTGGTTTGTAGaggttataatttttttttttttttttttaa
aaaaaattttttttaaaaaaaaaaaaaggggggggttgtaggggttcgaa
ataccgaaAAACCCCGTCCCCCTGgtttttaaggttttaaaatttttttt
ttttttttttttttttttttgaatatagATTGATATTAGtagtaattaaa
tattaaattaaaacgttacaatatataaattgcttaaaatacgTACAGCT
AGGAaattcaaagttaaataaaaaattgaaatcacgacacaaacaaaact
gaaaactgaatcGAAATACTGTCGAAGTAGCACAACCTAGCGGGTCATGC
CAAACTCAAAAGCATAAGCAAAAGCAATGGAAAAtacggtgaaaaaatta
agtactaaaatctatgaaaagctaagatttcaaaatattgttaaaattta
ataaatcaatttcatcaaacctAAGGTTTGGTTTTAGTGTTCGTGTACTG
ATCTCGTTAAAGCAAACGAAATTTTAGTTCTAATCCAATTTTTGGTTTGA
GACGCGTGAGAATCTGTCTTATCAGCTAGTAGATTAGCTAGCGCTCCAAA
GAAGTGCTCAGCCTCTACACCCATTCCACNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCAACTTTGAT
AATTCGTTCGTTgtagtttctctttttttcccgtTCGTTTGACGCAAAAG
CGCTTTTGAGACTTTGGGCTGTGTATCTCAGAGCATAGGCGTCGAATACC
TTTACATAAAAAAATGCTCGTTGTCCACGAACCCAAAAACCTCGCTCCAG
CACTGATGTCAGCTCTCGCGTTGTCAGTCGTAATCGCACCTTTGTTTAAA
TTCAGAGGTTTAAATACGGGTCAAGATAAACATTTTACAAGAActtttgt
cattggattggttttttattatgtttttctaaagaacgcgtcatttctat
tgttttgaataaccaattatgtgagcatcttataaatacTTCAACACAAT
TGGTAAATACTGGAATATTGACAAAAATAAggccgtcaccgtctgatttt
aaaatactgttttcccgtctcttttttcatcaaatcccTTAACCCGGTCT
agaaaagggccaatcccgtcacaccgtaaaaatACAAACCCGCCTCTGTA
GTCTGTATTTATAGAAGACTTTTACTGCGGTCTGAAAAATATTAATCATA
GTAAGTGGTCATAAAGTAACTACTAGAAGTGGGTAGAGGATTTTAGGTGG
GGGtccgaaaaatattttccacccCAAGGGGGGGAGGAGATCTGAAAATC
TGAGAGATCtagcttaaagggacataacagtaatTTGTAAACAGACTGTA
TGCagcagatacaaaatcaaaacaaatgtcacatgtcaaaataaaaaatc
aaaccaaatatggctaattttgattgttcaattgttttacaagtttgttt
tggacacgtgattttaattgttctctttaatgacacgtggtttgcgcaat
gtttacattttactactgtaatgtccctttaaaaccTTGTCTTTATTTCA
AGAATTTCACGGTTCGCACTAACGACATGTAGGGCCGAGGGGGGGGCATT
GTCCTTGCACTATCCGCACTGtagtgatttttcatttttatcttttagtG
TAGGCTTTTGAGAATGTTTTCAGAATAATCAGTTCAAAACAGAGTAGTTT
TAACTAAATAAAAGGGTCGAAAACTCAAACTCAAACTTATTGCTCCTCAG
TTATAACCGCgtgacaaaaataccatttccCAAAAAGGTAGAACACACAA
AATTCatagaatgaaaataaattgtGAAGCTCTGGAACAAGTACAGTGAG
GAAACAATGTTTTGAAACATCCTCCACCCCATCTGGAAGATACTTTATGA
CCACTCCCTAAAAAATATAgcctcaaaattttagaaaaatggagATCAAC
TCAACATACAAAAAATGCTCTGGTGCACCTAGAAAATAATGTCTGATACA
GTTTTTTGATACtgtctgtgagtgaaccctgGTCTACAGAAGTTCGAAAT
CTTCTTTTGAATTATATTAATAATTAGCTTGCTTCTTATTTTCCTTGGAC
CAGGAACGCAGGAACAGTGCTTGTATAGAGTTGTTATATAAAATAGATAA
ATTGCCATGGTAGACTGGTTTGGAAATGCAGAGCCCAATGCAAGCTTAAG
TTGCAACGAAATACAACGACACGctttataaaaactaaaaacaagGCTTA
TTTATACAGGGCTTTTTGGAAATGTTAAAAGATAGCTGCGAAATTTTCTG
GGTTTATATCGGGGGAGTCGgcgttttttaaagcaaaagtgGCTTTGTCA
ATTCTTATGCTGttaatatttttcagaaatcggaTGTCAATTCGGGAATT
GGAAACTAGCGAACATGCTAAACACCGATATGCATTTTTGAGGGCGTTTG
ACGAAATCAAGAAGCTTTCTCATGATCATCCTACCTACGGGGCTGACTCC
TTTTGGAGCATTGCATCAATCAATGGCCAGCCGTTCACCTCCAAGAGATC
GAAACCCCCTNTTTTGGAGCATTGCATCAATCAATGGCCAGCCGTTCACC
TACAAGAGATCGAAACCCCCCCAATGCAAACATGGAAAAATGTGGAGAGG
ACACAGCCAGCATGAAAACGTTCTTTTTCTCCCTTGGTACCGCGCTTATC
TCTTGCGATTGGAAGATGCTTTGGTACGACATGCTCCAGTCGACAATCTT
AAAGTAGCGTTGCATTATTGGGATGAAACTTCACCAGAATCTTTGGCTAA
TGGTCTCCCACGCCTCTTAACAGATGagtttgttgaaattgataaaaatg
gaAACACCATTCCCAACCCTCTCTTAGGATTTACTCTACCAGAAGCAATA
CCTCTAAATAAAGCAACACAAAAATACACAAAAGCAGCTCAATACACAAC
CTGCCGATATCCCTTCTCTGGCCTGATGAATCCTCGAGACCCAACCAAAT
ACACCGCAAATGCTGAGTTCCAGAACCATTATCTTAACCTCATTCTTCGT
GATCCAAAAGAGTACCTGAATCAAAATATCATCCACTCTTTAAATGATTT
GAAGGCTCCACTTGTACCCATCAAAGATATATACAAAGAATGCTTGGATA
TTGAAGACTACAACAAGTTTTCAAATATCTCGTCAGCAGGATGCGGGAAC
ATCTCTCTCGAGCACGCCAGTATTAGTATGCTTCACACATTAGGTGGAAA
TAGTGAAGACAACTCTGTTCAACGCGAGTTGATAGCTGGCTCCCATGGTG
ATTTAGGATCAAAAGAAATGGCGGCTTTTgatcctttatttttcttgcaT
ATGTCAAATGTTGATCGTATGTTTTGGATTTGGCAAGAGAAGTACCATCA
TACCACATCAACAATAGTCACGAATAAGAAAGGTAGGGTCGTTTCAAAGC
CTTTTAAGATAAAGGCCAGTGGTAACGGAATCAAACCCAATCAAGGTCAA
GGACCTTCCCCATCGCAACAGGGTGAAGAAATTTTGGGTATGAGTACTTC
ACTACATCCATTTAAATTTGGAGCTCTCAAACAACCCACGGTTACCAATG
ACTTGATCGATATCAAAGGGGAATTGCATTATACATACACAAGAGGCTCA
TTTGATAAGAAAGACCCCTCACGTTAGGTGATTTTCAAGGCTGTACCAAA
CCCCCTCAAGAAAAAGAGAGGGCATTCACATTTTGTCGACAAACATTTTA
TTGGAACAATCAGTAATAGCTTTTCTAATTGAGctaattaatttcaattt
ttcttactTATTTTTAAACCTATTAAACGTCTATTTGTGTAATTTTGTAA
CCTACTATTAGCTTTTTGTTGAAACCCATATTTAATTCATGATAGCACAA
TACAAAATCATTTGTGATTCactcttttttaataagaacaattttatagt
GATGACTAGGCTTAAAATTACCGAAAGATAAGAATAATGCCGAGCCCGGA
A

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_015546	XLOC_015546	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000635	supercontig	sc0000635:60446..68196 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.51174	5.41937	7.02866	6.15614	3.86081	2.93122	1.05097	1.82428	0.137771	0	0.454984	0.217769	17.9575	9.25949	0.22313	0.0749514	0.954133	0.863347	31.6065	22.9915	5.26469	6.83017	24.3579	24.9864	31.0695	16.6066	21.1676	24.3413	0.725853	1.75819

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00027569 vs. Swiss-Prot (Human)

BLAST of TCONS_00027569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00027569 (transcript) - C. hemisphaerica