|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027565 ID=TCONS_00027565|Name=TCONS_00027565|organism=Clytia hemisphaerica|type=transcript|length=1058bp
cttagaaccacacccttccactgatacgcttcgcacccaaaacgcgttag
aacttagacccttcactgatacgcttcgcacccaaaacaccatagaacca
cacccttccactgatatgcttcgcacccaaaatgCGTTaggacctagacc
cttcactgatacgcttcgcacccaaaacgcgttagaacctagacccttca
ctgatacgcttcgcacccaaaacatcttagaaccacacccttccactgat
acgctccgcacccaaaacgcgttagaacctagacccttcaatgatacgct
tcgcacccaaaacaccataaaaccacacccttccactgatacgcttcNAA
AACCTGGAATATGGATAGTATCAATACAGACTAATTATATATCCAATGGG
AGGAAAGCTAGATAGGAGCTTTTTTCTTGAGGGAAGTGACAAGATCAACT
AACTGCAATCAGAACAGATATCAAGTCGTAATGAAGATAGagaagaaaaa
ttctaaaatcaaagTAACTAGAGTTACtttgatcaaaatcaaaatgaaga
tCGACAATGCCGCAGACGTTTGATTTATTGggaaaaaaaacatctacctT
TATTCAGAATCCAGCTGAAAGATTTGAGTAAACATGATCGATAGTTACCT
GGACCAGATAAGCATAGATTTAAATGACACGGGTGTTTTGTTACGAGCCT
GAGTTGGGCAAAAGTCAACGTTTGAAGTGATATATGTCTGTGAACAAGTA
CCCACTNCCTGAGTTGGGCAAAAGTCAACGTTTGAAGTGATATATGTCTG
TGAACAAGTACCCACTCCACTACTTGGACAACCAGGAATTGAAGCTTTGT
TACAATCATATCAGGAATTAACTTGGTGGAAGACAAAAAGTAGaacaaaa
gtaaaattataAACAGTGAGAATgactttgtaaaatattttaaagagaTT
TTGGGGGTCTAGGGCAAGTGAAAGGATTCCACATTATCTGCACCGAGAAA
AGTTCAAATTCCGGTACTGGAACCATTGCGAATGGAGATTGATCGCATGC
TGCAGATG Run BLAST on NCBI protein sequence of TCONS_00027565-protein >TCONS_00027565-protein ID=TCONS_00027565-protein|Name=TCONS_00027565-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
LEPHPSTDTLRTQNALELRPFTDTLRTQNTIEPHPSTDMLRTQNALGPRP
FTDTLRTQNALEPRPFTDTLRTQNILEPHPSTDTLRTQNALEPRPFNDTL
RTQNTIKPHPSTDTLXKPGIWIVSIQTNYISNGRKAR Run BLAST on NCBI transcript from alignment at sc0000632:188587..189644 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027565 ID=TCONS_00027565|Name=TCONS_00027565|organism=Clytia hemisphaerica|type=transcript|length=1058bp|location=Sequence derived from alignment at sc0000632:188587..189644 (Clytia hemisphaerica)
CATCTGCAGCATGCGATCAATCTCCATTCGCAATGGTTCCAGTACCGGAA
TTTGAACTTTTCTCGGTGCAGATAATGTGGAATCCTTTCACTTGCCCTAG
ACCCCCAAAAtctctttaaaatattttacaaagtcATTCTCACTGTTtat
aattttacttttgttCTACTTTTTGTCTTCCACCAAGTTAATTCCTGATA
TGATTGTAACAAAGCTTCAATTCCTGGTTGTCCAAGTAGTGGAGTGGGTA
CTTGTTCACAGACATATATCACTTCAAACGTTGACTTTTGCCCAACTCAG
GNAGTGGGTACTTGTTCACAGACATATATCACTTCAAACGTTGACTTTTG
CCCAACTCAGGCTCGTAACAAAACACCCGTGTCATTTAAATCTATGCTTA
TCTGGTCCAGGTAACTATCGATCATGTTTACTCAAATCTTTCAGCTGGAT
TCTGAATAAaggtagatgttttttttccCAATAAATCAAACGTCTGCGGC
ATTGTCGatcttcattttgattttgatcaaaGTAACTCTAGTTActttga
ttttagaatttttcttctCTATCTTCATTACGACTTGATATCTGTTCTGA
TTGCAGTTAGTTGATCTTGTCACTTCCCTCAAGAAAAAAGCTCCTATCTA
GCTTTCCTCCCATTGGATATATAATTAGTCTGTATTGATACTATCCATAT
TCCAGGTTTTNgaagcgtatcagtggaagggtgtggttttatggtgtttt
gggtgcgaagcgtatcattgaagggtctaggttctaacgcgttttgggtg
cggagcgtatcagtggaagggtgtggttctaagatgttttgggtgcgaag
cgtatcagtgaagggtctaggttctaacgcgttttgggtgcgaagcgtat
cagtgaagggtctaggtcctAACGcattttgggtgcgaagcatatcagtg
gaagggtgtggttctatggtgttttgggtgcgaagcgtatcagtgaaggg
tctaagttctaacgcgttttgggtgcgaagcgtatcagtggaagggtgtg
gttctaag Coding sequence (CDS) from alignment at sc0000632:188587..189644 >TCONS_00027565 ID=TCONS_00027565|Name=TCONS_00027565|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0000632:188587..189644 (Clytia hemisphaerica)
CTATCTAGCTTTCCTCCCATTGGATATATAATTAGTCTGTATTGATACTA
TCCATATTCCAGGTTTTNgaagcgtatcagtggaagggtgtggttttatg
gtgttttgggtgcgaagcgtatcattgaagggtctaggttctaacgcgtt
ttgggtgcggagcgtatcagtggaagggtgtggttctaagatgttttggg
tgcgaagcgtatcagtgaagggtctaggttctaacgcgttttgggtgcga
agcgtatcagtgaagggtctaggtcctAACGcattttgggtgcgaagcat
atcagtggaagggtgtggttctatggtgttttgggtgcgaagcgtatcag
tgaagggtctaagttctaacgcgttttgggtgcgaagcgtatcagtggaa
gggtgtggttctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027565-exon-sc0000632-1491911889:188587..189644 | TCONS_00027565-exon-sc0000632-1491911889:188587..189644 | Clytia hemisphaerica | exon |
| TCONS_00027565-exon-sc0000632-1510915933:188587..189644 | TCONS_00027565-exon-sc0000632-1510915933:188587..189644 | Clytia hemisphaerica | exon |
| TCONS_00027565-exon-sc0000632-1575043694:188587..189644 | TCONS_00027565-exon-sc0000632-1575043694:188587..189644 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000632 | supercontig | sc0000632:188587..189644 . |
Blast
The following BLAST results are available for this feature:
|
