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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027558 ID=TCONS_00027558|Name=TCONS_00027558|organism=Clytia hemisphaerica|type=transcript|length=1035bp
NCAGATATAAACATTGCTTCTCATCACTAGAAGCTCCTTTTGTAGAACTC
CCACAAGGCCAGGATGCATGTGGAAGGTTAAAATCTCCTAGCAAGAATAT
GTCTGGTAAGGTATTTTCCGCAAAAGTATTGAAAGTATCTCTcatctttt
ttaatatttcagaaaattctatCGAGGTTGATGAATGACCGTGAGATGAG
TCATCTGGTTGTCGATAAATAACAGATATCAATATGTTTAATTTCTTGGA
GTGAACAATTAGCAGTTCATTCACACCGTTTGAATACTGCAACACTGGTT
TAAAGGTTGAACTGATGTCATTTCTAATGTAAAGTGCTACTCCTCCACTG
TGTCcaccatatttctttttggttCGTGATCTATCAGCTCTAATTATGAA
GTAGTCGTTAATTTCAACTTCTGCATCCTTGTGATCAGCAAGCCACGTCT
CAGTTAGAGcgatgaaaagtgaatttttcttatgTAAAATATCACTTACA
AATGGAACAAACGATTGGACAGTTAATGGTTTTAGTCCTTGAATGTGGAG
TAGCTTGAATGATTCTAAGCTTGCATCATATGCTGGTTGTGCATGTGGTG
TTGAAAGATTGGTTGAGTTGACCATTGGTTGAAATTCGGGACTTGATTCA
TAAGCCTTGGTGGTGGTTGAGGTTGATTTTTGTTCATCTCTGCAAACTTT
TTGTCCATTGTCTGTAAAATCTCGTCTTTCAGATTTTGGATGAGTATTAG
AAAATCCCTCTCCTTATCACTGGCATCAGGAATTTCGCCAGGGTCTCTCA
AATTTGTATCCTTCCTGTATTTTAACGAATTCTCAGTTAGTGTTCCCTTG
ACATGTACAAATTTGCACGATTTGTCAAGACATTTATTGTATTTGATAGA
GTTGTAACACATCCTTGGGTGGAAAAATTTACAGTTTTTTCCTTCATTAC
ATCCCCTTGGTTTTTTATTTCCATGTctcaaaagttttttacaagCTTGG
GGGTGCTTGTACTGACATTTTTTACCTTTTATACC Run BLAST on NCBI protein sequence of TCONS_00027558-protein >TCONS_00027558-protein ID=TCONS_00027558-protein|Name=TCONS_00027558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MVNSTNLSTPHAQPAYDASLESFKLLHIQGLKPLTVQSFVPFVSDILHKK
NSLFIALTETWLADHKDAEVEINDYFIIRADRSRTKKKYGGHSGGVALYI
RNDISSTFKPVLQYSNGVNELLIVHSKKLNILISVIYRQPDDSSHGHSST
SIEFSEILKKMRDTFNTFAENTLPDIFLLGDFNLPHASWPCGSSTKGASS
DEKQCLYL Run BLAST on NCBI transcript from alignment at sc0000632:163463..164497 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027558 ID=TCONS_00027558|Name=TCONS_00027558|organism=Clytia hemisphaerica|type=transcript|length=1035bp|location=Sequence derived from alignment at sc0000632:163463..164497 (Clytia hemisphaerica)
GGTATAAAAGGTAAAAAATGTCAGTACAAGCACCCCCAAGcttgtaaaaa
acttttgagACATGGAAATAAAAAACCAAGGGGATGTAATGAAGGAAAAA
ACTGTAAATTTTTCCACCCAAGGATGTGTTACAACTCTATCAAATACAAT
AAATGTCTTGACAAATCGTGCAAATTTGTACATGTCAAGGGAACACTAAC
TGAGAATTCGTTAAAATACAGGAAGGATACAAATTTGAGAGACCCTGGCG
AAATTCCTGATGCCAGTGATAAGGAGAGGGATTTTCTAATACTCATCCAA
AATCTGAAAGACGAGATTTTACAGACAATGGACAAAAAGTTTGCAGAGAT
GAACAAAAATCAACCTCAACCACCACCAAGGCTTATGAATCAAGTCCCGA
ATTTCAACCAATGGTCAACTCAACCAATCTTTCAACACCACATGCACAAC
CAGCATATGATGCAAGCTTAGAATCATTCAAGCTACTCCACATTCAAGGA
CTAAAACCATTAACTGTCCAATCGTTTGTTCCATTTGTAAGTGATATTTT
AcataagaaaaattcacttttcatcgCTCTAACTGAGACGTGGCTTGCTG
ATCACAAGGATGCAGAAGTTGAAATTAACGACTACTTCATAATTAGAGCT
GATAGATCACGaaccaaaaagaaatatggtgGACACAGTGGAGGAGTAGC
ACTTTACATTAGAAATGACATCAGTTCAACCTTTAAACCAGTGTTGCAGT
ATTCAAACGGTGTGAATGAACTGCTAATTGTTCACTCCAAGAAATTAAAC
ATATTGATATCTGTTATTTATCGACAACCAGATGACTCATCTCACGGTCA
TTCATCAACCTCGatagaattttctgaaatattaaaaaagatgAGAGATA
CTTTCAATACTTTTGCGGAAAATACCTTACCAGACATATTCTTGCTAGGA
GATTTTAACCTTCCACATGCATCCTGGCCTTGTGGGAGTTCTACAAAAGG
AGCTTCTAGTGATGAGAAGCAATGTTTATATCTGN Coding sequence (CDS) from alignment at sc0000632:163463..164497 >TCONS_00027558 ID=TCONS_00027558|Name=TCONS_00027558|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0000632:163463..164497 (Clytia hemisphaerica)
ATGGTCAACTCAACCAATCTTTCAACACCACATGCACAACCAGCATATGA
TGCAAGCTTAGAATCATTCAAGCTACTCCACATTCAAGGACTAAAACCAT
TAACTGTCCAATCGTTTGTTCCATTTGTAAGTGATATTTTAcataagaaa
aattcacttttcatcgCTCTAACTGAGACGTGGCTTGCTGATCACAAGGA
TGCAGAAGTTGAAATTAACGACTACTTCATAATTAGAGCTGATAGATCAC
GaaccaaaaagaaatatggtgGACACAGTGGAGGAGTAGCACTTTACATT
AGAAATGACATCAGTTCAACCTTTAAACCAGTGTTGCAGTATTCAAACGG
TGTGAATGAACTGCTAATTGTTCACTCCAAGAAATTAAACATATTGATAT
CTGTTATTTATCGACAACCAGATGACTCATCTCACGGTCATTCATCAACC
TCGatagaattttctgaaatattaaaaaagatgAGAGATACTTTCAATAC
TTTTGCGGAAAATACCTTACCAGACATATTCTTGCTAGGAGATTTTAACC
TTCCACATGCATCCTGGCCTTGTGGGAGTTCTACAAAAGGAGCTTCTAGT
GATGAGAAGCAATGTTTATATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027558-exon-sc0000632-1491911889:163463..164497 | TCONS_00027558-exon-sc0000632-1491911889:163463..164497 | Clytia hemisphaerica | exon |
| TCONS_00027558-exon-sc0000632-1510915933:163463..164497 | TCONS_00027558-exon-sc0000632-1510915933:163463..164497 | Clytia hemisphaerica | exon |
| TCONS_00027558-exon-sc0000632-1575043694:163463..164497 | TCONS_00027558-exon-sc0000632-1575043694:163463..164497 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000632 | supercontig | sc0000632:163463..164497 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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