TCONS_00027499 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027499
Unique NameTCONS_00027499
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length458

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027499 ID=TCONS_00027499|Name=TCONS_00027499|organism=Clytia hemisphaerica|type=transcript|length=458bp
AGCGAATGCCGTTTGATTCAAGATGCCGTCTTTAATGGAAGCCGATCATT
CTTTTATTAAGCATCTTTTCTGCGAGAAAAGTATTATTAATGAAGTATAC
AATGttagaaatttgttcaaagTTGATCGTCAAATCGATCAACCGATTTA
TAGCCTTCGAAGGTTATTCAGAGAACAAGAAAAACGACCGCGTAAAGTGC
AAGATGAACGATTTTATCtcgaaaaacttttcaaaattcggGATGAGAAA
GTTTATCGCACTTTCGATTTGCGTTTCTTGTTCGAAGAAGACATCCAGAC
AGCTGATGTCACACGTGAATTGAAATCTCTTTGCGAACCAAGAAAACCAT
CATCAGAGTTTGGAGATGCGTTGAATGTTTTATCAACAAGTCAACAAAGG
AGATCCATCAGTCTTTATATGCCGTACGatcttccaatcgaaaccagcTC
TGAATGCG
Run BLAST on NCBI

protein sequence of TCONS_00027499-protein

>TCONS_00027499-protein ID=TCONS_00027499-protein|Name=TCONS_00027499-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MPSLMEADHSFIKHLFCEKSIINEVYNVRNLFKVDRQIDQPIYSLRRLFR
EQEKRPRKVQDERFYLEKLFKIRDEKVYRTFDLRFLFEEDIQTADVTREL
KSLCEPRKPSSEFGDALNVLSTSQQRRSISLYMPYDLPIETSSEC
Run BLAST on NCBI

transcript from alignment at sc0000630:143376..143833

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027499 ID=TCONS_00027499|Name=TCONS_00027499|organism=Clytia hemisphaerica|type=transcript|length=458bp|location=Sequence derived from alignment at sc0000630:143376..143833 (Clytia hemisphaerica)
CGCATTCAGAgctggtttcgattggaagatCGTACGGCATATAAAGACTG
ATGGATCTCCTTTGTTGACTTGTTGATAAAACATTCAACGCATCTCCAAA
CTCTGATGATGGTTTTCTTGGTTCGCAAAGAGATTTCAATTCACGTGTGA
CATCAGCTGTCTGGATGTCTTCTTCGAACAAGAAACGCAAATCGAAAGTG
CGATAAACTTTCTCATCccgaattttgaaaagtttttcgaGATAAAATCG
TTCATCTTGCACTTTACGCGGTCGTTTTTCTTGTTCTCTGAATAACCTTC
GAAGGCTATAAATCGGTTGATCGATTTGACGATCAActttgaacaaattt
ctaaCATTGTATACTTCATTAATAATACTTTTCTCGCAGAAAAGATGCTT
AATAAAAGAATGATCGGCTTCCATTAAAGACGGCATCTTGAATCAAACGG
CATTCGCT

Coding sequence (CDS) from alignment at sc0000630:143376..143833

>TCONS_00027499 ID=TCONS_00027499|Name=TCONS_00027499|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at sc0000630:143376..143833 (Clytia hemisphaerica)
GCATTCAGAgctggtttcgattggaagatCGTACGGCATATAAAGACTGA
TGGATCTCCTTTGTTGACTTGTTGATAAAACATTCAACGCATCTCCAAAC
TCTGATGATGGTTTTCTTGGTTCGCAAAGAGATTTCAATTCACGTGTGAC
ATCAGCTGTCTGGATGTCTTCTTCGAACAAGAAACGCAAATCGAAAGTGC
GATAAACTTTCTCATCccgaattttgaaaagtttttcgaGATAAAATCGT
TCATCTTGCACTTTACGCGGTCGTTTTTCTTGTTCTCTGAATAACCTTCG
AAGGCTATAAATCGGTTGATCGATTTGACGATCAActttgaacaaatttc
taaCATTGTATACTTCATTAATAATACTTTTCTCGCAGAAAAGATGCTTA
ATAAAAGAATGATCGGCTTCCATTAAAGACGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015499XLOC_015499Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027499-proteinTCONS_00027499-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027499-exon-sc0000630-1491911889:143376..143833TCONS_00027499-exon-sc0000630-1491911889:143376..143833Clytia hemisphaericaexon
TCONS_00027499-exon-sc0000630-1510915933:143376..143833TCONS_00027499-exon-sc0000630-1510915933:143376..143833Clytia hemisphaericaexon
TCONS_00027499-exon-sc0000630-1575043694:143376..143833TCONS_00027499-exon-sc0000630-1575043694:143376..143833Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000630supercontigsc0000630:143376..143833 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.284962	0	0.806621	0.631322	1.72929	0.303669	0.549545	0.68597	0.120066	1.18977	0	0.474457	0.0947596	0.196817	0	0.173648	0	0.10963	0.15146	0.158492	0.275517	1.00791	0	0.44557	0.152975	0.682635	0.19537	0	0.474428	0.161122
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027499 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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