TCONS_00027423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027423
Unique NameTCONS_00027423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1068

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027423 ID=TCONS_00027423|Name=TCONS_00027423|organism=Clytia hemisphaerica|type=transcript|length=1068bp
GTTCAAAgtgaaaagtgcttataaaaaatatcaaaatccgcgatttaaaa
aaaaaattatttcactttcgatatcaatcacggctgccattttttgtttg
tacttctagtcttgtgcgcataacgaatcaagcgctctgattggtccaga
ataaaaacaatcgatcggtcgcagacatttcaatagaaacaaaagattct
acagcctagcttcaaatggatgaatagcgcatttcttatcctcttttccc
aaatctctgatcTTATCAATCTTCACAAAGTACAAAACCCAAACAAAATA
CACAAGCCACATGATGACCCAGATTgtcCGTCATCACTTTGCCACCACAA
AGACTCTGGAATTTTCGCCTTGAAAGAACACAGTAACATTTTCGTTCAAT
GCTCTAACGGAAAAGCTTTTTGCCGGAAATGTCCCCGTGGATTGATATTT
AGTGATTTCTCGAAAACTTGCATTCGACAATCACACAAAACAACAATAAG
TACTACAACCACCACAACAACTACAAATTGGCCCCCTCTGCATTACAACC
CATACAAAACACACATTAGGCCACACACCACAAAATCGACAAAAGCTCCT
CACGACTTATTCAGAGGAATCAAACTTCACAAGTTTCACAAGCCACATAC
CACTAAAGTTCCACATGTACCTCACTCAGACTGTCCAACCTCATTATGTG
CCCATAAAGTTGATGGCTCTTTATTCCGCCTCAATGATCATCAGCCAAAC
ATCTTCGTTCAATGCAGTCACGGAAAACCAGTCTGCAAAAAGTGTCCAGA
ACATCAGTTCTTCAATGATAAATTTAATGTATGTGTTCGACGAACCATCC
CCCATACCACAACAAAGAAATCTCATGTCAGCGTTGTTGGACATCATAAA
ACATTGAGAAATAATTTCTCTAGATAAATAACCAACCTTAAAAAGTTACT
GGCCGAAGTATCTACTGGAtctacttttacttttttttttaatttttaaa
caattttaacCTATTTTTAACAAATTGCCCGACAAATTGccgatgtagaa
cgataaactcggtatatA
Run BLAST on NCBI

protein sequence of TCONS_00027423-protein

>TCONS_00027423-protein ID=TCONS_00027423-protein|Name=TCONS_00027423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
MNSAFLILFSQISDLINLHKVQNPNKIHKPHDDPDCPSSLCHHKDSGIFA
LKEHSNIFVQCSNGKAFCRKCPRGLIFSDFSKTCIRQSHKTTISTTTTTT
TTNWPPLHYNPYKTHIRPHTTKSTKAPHDLFRGIKLHKFHKPHTTKVPHV
PHSDCPTSLCAHKVDGSLFRLNDHQPNIFVQCSHGKPVCKKCPEHQFFND
KFNVCVRRTIPHTTTKKSHVSVVGHHKTLRNNFSR
Run BLAST on NCBI

transcript from alignment at sc0000626:61677..63427-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027423 ID=TCONS_00027423|Name=TCONS_00027423|organism=Clytia hemisphaerica|type=transcript|length=1751bp|location=Sequence derived from alignment at sc0000626:61677..63427- (Clytia hemisphaerica)
GTTCAAAGTGAAAAGTGCTTATAAAAAATATCAAAATCCGCGATTTAAAA
AAAAAATTATTTCACTTTCGATATCAATCACGGCTGCCATTTTTTGTTTG
TACTTCTAGTCTTGTGCGCATAACGAATCAAGCGCTCTGATTGGTCCAGA
ATAAAAACAATCGATCGGTCGCAGACATTTCAATAGAAACAAAAGATTCT
ACAGCCTAGCTTCAAATGGATGAATAGCGCATTTCTTATCCTCTTTTCCC
AAATCTCTGATCTTATCAATCTTCACAAAGTACAAAACCCAAACAAAATA
CACAAGCCACATGATGACCCAGATTGTAAGTACAAACAGCTTGATCTTAT
CTTAGCCCCTAGATGGGATACTAATTTGTGAGTTAGAAATTGAAAATTAT
CAAACTTTAATCAAAATTTTAATTCAAGATGGGCAATTATGACAGAAATT
TTGACGAAGCGATTTTCGAGGTGGTCGATTTTGTAATCTTTCCTAATCAA
TTGCAAATTGAGATAATTTCGAGGAAAGGGCTTTCTTGCTAGCACATACC
CGACACCCATTTTACCAAAAGTAACCCCGGTTATTAAGCCCTTATGGTAT
TGAAAAGTAAACTAGTCAAACCCAAGAAAATTACTAGAAAAGATTAATGT
TTTTGAAACGTCGTAGAAAATATGAACTTTCATTGTTTTTATAAATACTT
AGGTCTTTATTTTTTCAGAGCACGATAATACGGAATTTATTTTTGTTAAT
TATGTTTAAATCATGAACTGCTGATATTTATTATTTTATTTTCAGGTCCG
TCATCACTTTGCCACCACAAAGACTCTGGAATTTTCGCCTTGAAAGAACA
CAGTAACATTTTCGTTCAATGCTCTAACGGAAAAGCTTTTTGCCGGAAAT
GTCCCCGTGGATTGATATTTAGTGATTTCTCGAAAACTTGCATTCGACAA
TCACACAAAACAACAATAAGTACTACAACCACCACAACAACTACAAATTG
GCCCCCTCTGCATTACAACCCATACAAAACACACATTAGGCCACACACCA
CAAAATCGACAAAAGCTCCTCACGACTTATTCAGAGGAATCAAACTTCAC
AAGTTTCACAAGCCACATACCACTAAAGTTCCACATGTACCTCACTCAGA
CTGTAAGTATCAAATCTTAACAAAGATAAATATCTTACTGACTACGAATT
TTACATGTATAAATTTGAATTCTGAAGTATTAAAAAATGTCTACACCATG
CCTTCAAGTCTTAAAAGTAGGAGTTTACGCCTGAAAAGAGGAAAGATGTG
AAGTAGCCTACCAAATGACGTTTATCCCCTTATAAAAACATTAATTATAC
ATATTTTTGTCATAGGTCCAACCTCATTATGTGCCCATAAAGTTGATGGC
TCTTTATTCCGCCTCAATGATCATCAGCCAAACATCTTCGTTCAATGCAG
TCACGGAAAACCAGTCTGCAAAAAGTGTCCAGAACATCAGTTCTTCAATG
ATAAATTTAATGTATGTGTTCGACGAACCATCCCCCATACCACAACAAAG
AAATCTCATGTCAGCGTTGTTGGACATCATAAAACATTGAGAAATAATTT
CTCTAGATAAATAACCAACCTTAAAAAGTTACTGGCCGAAGTATCTACTG
GATCTACTTTTACTTTTTTTTTTAATTTTTAAACAATTTTAACCTATTTT
TAACAAATTGCCCGACAAATTGCCGATGTAGAACGATAAACTCGGTATAT
A

Coding sequence (CDS) from alignment at sc0000626:61677..63427-

>TCONS_00027423 ID=TCONS_00027423|Name=TCONS_00027423|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at sc0000626:61677..63427- (Clytia hemisphaerica)
GTCCAACCTCATTATGTGCCCATAAAGTTGATGGCTCTTTATTCCGCCTC
AATGATCATCAGCCAAACATCTTCGTTCAATGCAGTCACGGAAAACCAGT
CTGCAAAAAGTGTCCAGAACATCAGTTCTTCAATGATAAATTTAATGTAT
GTGTTCGACGAACCATCCCCCATACCACAACAAAGAAATCTCATGTCAGC
GTTGTTGGACATCATAAAACATTGAGAAATAATTTCTCTAGATAAGTCCG
TCATCACTTTGCCACCACAAAGACTCTGGAATTTTCGCCTTGAAAGAACA
CAGTAACATTTTCGTTCAATGCTCTAACGGAAAAGCTTTTTGCCGGAAAT
GTCCCCGTGGATTGATATTTAGTGATTTCTCGAAAACTTGCATTCGACAA
TCACACAAAACAACAATAAGTACTACAACCACCACAACAACTACAAATTG
GCCCCCTCTGCATTACAACCCATACAAAACACACATTAGGCCACACACCA
CAAAATCGACAAAAGCTCCTCACGACTTATTCAGAGGAATCAAACTTCAC
AAGTTTCACAAGCCACATACCACTAAAGTTCCACATGTACCTCACTCAGA
CTATGAATAGCGCATTTCTTATCCTCTTTTCCCAAATCTCTGATCTTATC
AATCTTCACAAAGTACAAAACCCAAACAAAATACACAAGCCACATGATGA
CCCAGATTGTCCAACCTCATTATGTGCCCATAAAGTTGATGGCTCTTTAT
TCCGCCTCAATGATCATCAGCCAAACATCTTCGTTCAATGCAGTCACGGA
AAACCAGTCTGCAAAAAGTGTCCAGAACATCAGTTCTTCAATGATAAATT
TAATGTATGTGTTCGACGAACCATCCCCCATACCACAACAAAGAAATCTC
ATGTCAGCGTTGTTGGACATCATAAAACATTGAGAAATAATTTCTCTAGA
TAAGTCCGTCATCACTTTGCCACCACAAAGACTCTGGAATTTTCGCCTTG
AAAGAACACAGTAACATTTTCGTTCAATGCTCTAACGGAAAAGCTTTTTG
CCGGAAATGTCCCCGTGGATTGATATTTAGTGATTTCTCGAAAACTTGCA
TTCGACAATCACACAAAACAACAATAAGTACTACAACCACCACAACAACT
ACAAATTGGCCCCCTCTGCATTACAACCCATACAAAACACACATTAGGCC
ACACACCACAAAATCGACAAAAGCTCCTCACGACTTATTCAGAGGAATCA
AACTTCACAAGTTTCACAAGCCACATACCACTAAAGTTCCACATGTACCT
CACTCAGACTATGAATAGCGCATTTCTTATCCTCTTTTCCCAAATCTCTG
ATCTTATCAATCTTCACAAAGTACAAAACCCAAACAAAATACACAAGCCA
CATGATGACCCAGATTGTCCAACCTCATTATGTGCCCATAAAGTTGATGG
CTCTTTATTCCGCCTCAATGATCATCAGCCAAACATCTTCGTTCAATGCA
GTCACGGAAAACCAGTCTGCAAAAAGTGTCCAGAACATCAGTTCTTCAAT
GATAAATTTAATGTATGTGTTCGACGAACCATCCCCCATACCACAACAAA
GAAATCTCATGTCAGCGTTGTTGGACATCATAAAACATTGAGAAATAATT
TCTCTAGATAAGTCCGTCATCACTTTGCCACCACAAAGACTCTGGAATTT
TCGCCTTGAAAGAACACAGTAACATTTTCGTTCAATGCTCTAACGGAAAA
GCTTTTTGCCGGAAATGTCCCCGTGGATTGATATTTAGTGATTTCTCGAA
AACTTGCATTCGACAATCACACAAAACAACAATAAGTACTACAACCACCA
CAACAACTACAAATTGGCCCCCTCTGCATTACAACCCATACAAAACACAC
ATTAGGCCACACACCACAAAATCGACAAAAGCTCCTCACGACTTATTCAG
AGGAATCAAACTTCACAAGTTTCACAAGCCACATACCACTAAAGTTCCAC
ATGTACCTCACTCAGACTATGAATAGCGCATTTCTTATCCTCTTTTCCCA
AATCTCTGATCTTATCAATCTTCACAAAGTACAAAACCCAAACAAAATAC
ACAAGCCACATGATGACCCAGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015440XLOC_015440Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027423-proteinTCONS_00027423-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027423-exon-sc0000626-1575043694:63103..63427TCONS_00027423-exon-sc0000626-1575043694:63103..63427Clytia hemisphaericaexon
TCONS_00027423-exon-sc0000626-1575043694:62276..62632TCONS_00027423-exon-sc0000626-1575043694:62276..62632Clytia hemisphaericaexon
TCONS_00027423-exon-sc0000626-1575043694:61677..62062TCONS_00027423-exon-sc0000626-1575043694:61677..62062Clytia hemisphaericaexon
TCONS_00027423-exon-sc0000626-1510915933:63103..63427TCONS_00027423-exon-sc0000626-1510915933:63103..63427Clytia hemisphaericaexon
TCONS_00027423-exon-sc0000626-1510915933:62276..62632TCONS_00027423-exon-sc0000626-1510915933:62276..62632Clytia hemisphaericaexon
TCONS_00027423-exon-sc0000626-1510915933:61677..62062TCONS_00027423-exon-sc0000626-1510915933:61677..62062Clytia hemisphaericaexon
TCONS_00027423-exon-sc0000626-1491911889:63103..63427TCONS_00027423-exon-sc0000626-1491911889:63103..63427Clytia hemisphaericaexon
TCONS_00027423-exon-sc0000626-1491911889:62276..62632TCONS_00027423-exon-sc0000626-1491911889:62276..62632Clytia hemisphaericaexon
TCONS_00027423-exon-sc0000626-1491911889:61677..62062TCONS_00027423-exon-sc0000626-1491911889:61677..62062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000626supercontigsc0000626:61677..63427 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.25659	0.609805	0.327797	0.421936	5.80991	3.86446	4.25623	4.78722	2.92771	3.18844	6.80488	5.54888	7.47687	10.4823	3.71585	4.78474	3.4651	3.20162	4.883	3.51003	3.35361	3.11462	1.45102	1.54835	3.05556	4.2554	2.81306	2.51962	1.87149	2.18385
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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