TCONS_00034843-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00034843-protein
Unique NameTCONS_00034843-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1704

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00034843-protein ID=TCONS_00034843-protein|Name=TCONS_00034843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1704bp
MMEEENVSLVDPSLPEEEELFNNKEENDCSLKFNTCKYCRGIIQKNLRRG
SSSYCSKICVETNKMVPSETTCPETGKVKLKNVFSNEKDWNYYREVIRDK
AAPVGAFYQVTNHVSGIKAGMKIECLDINNPINYCVATIINLQSHRVCLR
YDGFGTDPSHDFWCNFQAEELFPIGWCARNNYHLQPPTGITCTHDEWKAF
LSTTLTGALAAPEELFKKPENRRQLRCHSFVPGDRVEVIHPERQDLIVPA
KVTKSLGPYYFLVTTDFLPHVPSKTIYGYADCPDIYLHGYCESRGLELTF
TGQNEKGEMIRNKDSMIENNSKRSRVNNFRLAHKMEAVDGETTRVGTVAE
IFGRIAMLVFDGTSKRKFFDKNSTEVHPICWSERTKGCLHTPYGPVDFRN
KTVTVGLNPNVKPNTITSAASFKTFQQKTCPGNSASDSPTKPSVGQPVSE
DKPSSSCHAMEVMNDSQETSEVEILHGSPASPSFHNALEQKKSDLDQFIV
WLLNKYEIDPEDRCSVVKGDLVDSFQAYTNRVLSPRWFTSIYKLFPRVTS
TRKLVNDRFVNCLKFLRQRAPEKNIGAVYVKDAVEFLNMKNFAVQLGTDR
LVAFVSLVTRPNVPHNTQDIFATGYAPEGSGVFVISATLNSNDFTLVNFT
FHFEQIVCPPPIPRLSNFNEFRAAMILCKQASLCNSVDMATKSLSRGRKM
ANNCSIVAYPHRGNWCVNCKMMKGKTSASTSSSQSQQPPQYDVLSEVLEE
SLSDDGFDIGSMKDEEDPNLEIKIFFNKTCHPGLLLNPDKISQIAPHTPQ
EKPPQALKYLIERLIEVSINKDKFLEILEVAFGNRLFNKTKDKVIKKGLF
RFNSRLKVLRFIRRLTKYLKCCNTFLSVDTTTQCSENCRGRDDVLHKKKQ
LDIAIGYMDEHTNHSSPLQRPGKLNPGQTTKPGQPSNVQVLYQLPPSMSS
APHMSSSSPQQQIVVQTSLQQRFPQGTQFFLPQNHGNLTYMVVSNRDKMT
SSVQSPPYQQNVPTLNHPQHKNITSPPAAGVTQMLANVTKSNLVSDIDQP
NIKSSAHGTMVKREQAMHYDQRPMDDRQEQDVSRSQYGPIVQTKDKGHHI
HVHKVQHGNARVKYVEFKPARDGVSAQGGHNTQYYNPSNQQHLSVHTPHH
HQQQAPPSSAKSPLHSPPALRPPPALPPRSIALHSPPSLVPSPDVRPRFD
YRTHQGVRSPVQVTNFTVNAKHCGGKTILNLPRFVQKNNGTGKPTVLQAF
RTMPDKMGPQHSGSSSSIPTTTAVTMTMTYIPIQTTNTNNKLLYVPVHSQ
SSNHRQPVMLYPGNPPIKNGKPIGLPHQLLQGNKNVLVMPSNKMDGAFTT
VRIQGTSQNTVQSPQMTSSSSNVRHPAANEQLKNDHVIGDKPIKIERMDD
DSIKRGGRVEEKENENNKRTFQQMSHENHLQNNDLVPVHKKKRGRPPSSS
KLPHKSFRPADNTNPITLANRVLKDAFYKKQQQIQNQLQSYIDEPLSKCP
ELPENPEHWTSGELLKFLSVTDCASFADILKDEEIDGKSFLLLTREALME
FKGIRLGPALKIVGYSAYLRAKSRILNIERVSNRQIHRTPSTHVPNVSRA
QMTSQERKDNTALEEFPNSTPTLSREVESSSSKLLDSCQSETITTSKPVV
EERTESDVLNTEKEASNIETEAVEFENVPGRHCIEDDIPLQKNNFSDVVD
VKSN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_020268XLOC_020268Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00034843TCONS_00034843Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004092Mbt
IPR001660SAM
IPR021987SLED
IPR013761SAM/pointed
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004092Mbt repeatSMARTSM00561l3mbt_4coord: 88..187
e-value: 2.9E-24
score: 96.6
coord: 195..301
e-value: 8.0E-5
score: 20.3
IPR004092Mbt repeatPFAMPF02820MBTcoord: 121..190
e-value: 3.1E-21
score: 75.4
coord: 235..299
e-value: 1.0E-5
score: 25.7
coord: 334..392
e-value: 3.1E-5
score: 24.1
IPR004092Mbt repeatPROSITEPS51079MBTcoord: 88..187
score: 30.073
IPR004092Mbt repeatPROSITEPS51079MBTcoord: 195..301
score: 15.398
IPR004092Mbt repeatPROSITEPS51079MBTcoord: 345..392
score: 7.024
IPR001660Sterile alpha motif domainSMARTSM00454SAM_4coord: 1506..1572
e-value: 1.4E-4
score: 31.2
IPR001660Sterile alpha motif domainPFAMPF00536SAM_1coord: 1508..1563
e-value: 1.4E-6
score: 28.5
NoneNo IPR availableGENE3D2.30.30.140coord: 114..204
e-value: 2.4E-31
score: 107.7
NoneNo IPR availableGENE3D2.30.30.140coord: 306..401
e-value: 8.5E-8
score: 31.9
coord: 205..305
e-value: 6.7E-15
score: 54.8
NoneNo IPR availableGENE3D1.10.150.50coord: 1500..1576
e-value: 6.4E-11
score: 41.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1122..1197
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1590..1631
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1357..1464
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 428..458
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 912..939
NoneNo IPR availableCDDcd09509SAM_Polycombcoord: 1506..1562
e-value: 9.52005E-17
score: 76.364
NoneNo IPR availableSUPERFAMILY63748Tudor/PWWP/MBTcoord: 110..217
NoneNo IPR availableSUPERFAMILY63748Tudor/PWWP/MBTcoord: 196..299
NoneNo IPR availableSUPERFAMILY63748Tudor/PWWP/MBTcoord: 321..397
IPR021987SLED domainPFAMPF12140SLEDcoord: 772..877
e-value: 7.4E-12
score: 45.6
IPR013761Sterile alpha motif/pointed domainSUPERFAMILY47769SAM/Pointed domaincoord: 1503..1566

Blast
[Close]
BLAST of TCONS_00034843-protein vs. Swiss-Prot (Human)
Match: SMBT2 (Scm-like with four MBT domains protein 2 OS=Homo sapiens GN=SFMBT2 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.112e-23
Identity = 102/363 (28.10%), Postives = 151/363 (41.60%), Query Frame = 0 
Query:   72 CPETGKVKLKNVFSNEK--DWNYY--REVIRDKAAPVGAF---YQVTNHVSGIKAGMKIECLDINNPINYCVATIINLQSHRVCLRYDGFGTDPSHDFWCNFQAEELFPIGWCARNNYHLQPPTGI--TCTHDEWKAFLSTTLTGA--LAAPEELFKKPENRRQLRCHSFVPGDRVEVIHPERQDLIVPAKVTKSLGPYYFLVTTDFLPHVPSK-TIYGYADCPDIYLHGYCESRGLELT----FTGQN------EKGEMIRNKDSMIENNSKRSRVNNFRLAHKMEAVD----GETTRVGTVAEIFGRIAMLVFDGTSK---RKFFDKNSTEVHPICWSERTKGCLHTPYGPVDFRNKTVTV 405
            C +  KV +      EK  DW  +  R++   + AP        +    +  I  G  IE  D  NP  Y + ++I     R+ LRY G     S+D W  +    L P+GWC  N Y + PP+ I       EWK  L  +L  A     P E+FK   +   LR H F  G ++E ++      I PA VTK    ++F VT D L   PSK ++  +AD   I    +C   G+ LT    ++GQ+       K    +        N+  SR   F    K+EAV+    GE   V +V  + GR+  L  +G          D  S ++ P+ W E     L  P+  V  + + + V
Sbjct:  134 CTQNNKVLMPPDAIKEKYTDWTEFLIRDLTGSRTAPANLLEGPLRGKGPIDLITVGSLIELQDSQNPFQYWIVSVIENVGGRLRLRYVGLEDTESYDQWLFYLDYRLRPVGWCQENKYRMDPPSEIYPLKMASEWKCTLEKSLIDAAKFPLPMEVFK---DHADLRSHFFTVGMKLETVNMCEPFYISPASVTKVFNNHFFQVTIDDLRPEPSKLSMLCHADSLGILPVQWCLKNGVSLTPPKGYSGQDFDWADYHKQHGAQEAPPFCFRNTSFSR--GFTKNMKLEAVNPRNPGELC-VASVVSVKGRLMWLHLEGLQTPVPEVIVDVESMDIFPVGWCEANSYPLTAPHKTVSQKKRKIAV 490

HSP 2 Score: 103.605 bits (257), Expect = 3.961e-22
Identity = 53/132 (40.15%), Postives = 69/132 (52.27%), Query Frame = 0 
Query:   89 DWNYYREVIRDKAAPVGAFYQVTNHV-SGIKAGMKIECLDINNPINYCVATIINLQSHRVCLRYDGFGTDPSHDFWCNFQAEELFPIGWCARNNYHLQPPTGITCTHDEWKAFLSTTLTGALAAPEELFKKP 219
            +W  Y E     AAP  +F  V   + S  + GMK+E  + NNP  Y VATII      + LRY G+G D   DFWC+    +L P+GWC +NN  L PP  I   + +W  FL   LTG+  AP  L + P
Sbjct:   45 NWGEYLEETGASAAPHTSFKHVEISIQSNFQPGMKLEVANKNNPDTYWVATIITTCGQLLLLRYCGYGEDRRADFWCDVVIADLHPVGWCTQNNKVLMPPDAIKEKYTDWTEFLIRDLTGSRTAPANLLEGP 176
The following BLAST results are available for this feature:
BLAST of TCONS_00034843-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMBT21.112e-2328.10Scm-like with four MBT domains protein 2 OS=Homo s... [more]
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