TCONS_00027335 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027335
Unique NameTCONS_00027335
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2754

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027335 ID=TCONS_00027335|Name=TCONS_00027335|organism=Clytia hemisphaerica|type=transcript|length=2754bp
ttgTATCACACCTTTGATGATGATTTGTGGTTATTTATCGTATCTAATGG
TCAAACAAAtggatgaaaaagaaaagaaaaaaaacaaaaaagCAGTGAAG
TCTTCAAACAAATTAAAAACCAGAAGAAAAGTTGCAAAAGCTGATTGATG
TGTTGGAAAATTAGGAGGTATGCATTGATGGATGTGTTTTACTTTGAACG
TCGAGGAGCTTACGGCCGTTATTTACGACAAAACCCAAGTCATAGCGCCT
ACGTCAATAAAGGAATAAAGAGAGCTGTCAGTGAATgtcaaaaattgttc
aaatatNCAAGTCATAGCGCCTACGTCAATAAAGGAATAAAGAGAGCTGT
CAGTGAATGTCAAAATTTGTTCAAATATAACAGATGGAATTGTCGGTCAA
ATAACCCTCATGAGCCGTTTGGTGACGTTGTAAGAAAAGGGTGTCGCGAG
ACAGCGTTTGTCTATGCACTCGCTTCAGCTGGTCTAACATACGAGATGGT
TCGTGCATGCTCCGAAGGTCGTATTGGATGTCAACGCACGTGCGCAGAAA
AAGTTAACATCAAAGAAACACGACTTTTGAATGGGACACATGCAATCAAC
GATGCTTGTAATGATAATTTGAGATACGGTTTTAGGACTTGGTACGATGT
GGTGTTTAAAGGCGAGCCATACAGTGATATCAGAGCTGTCTTTAATATCA
AAAACAGCATTGTGGGCTACAAGcaaattgaaaaatcaactcGTCTTTCA
TGTCAATGCCATGGTGAATCAGGAAGTTGTCTTGTCCGAATTTGTTCAAA
AAGAATGCCACCGACTTTCAAACCTATCGGACAACACTTATATGATTTAT
ATGAAAAAGCAGTTTACGAGAGACCTAATCAACGAACAATAGAGACTGAC
GCTAACAGTTTAATCCGACATCGGCAACAACCAAAAATACACGTCAATCA
TCTACCCGTCGATGACGCCGACACACCGCAACAACGTAGCGTCAACTCCG
TAAGAAGCCGGCGTTCAGATATGTTATTTAacgttgaaaatttgaaattt
tatgaacaTTCGCCCGATTTTTGTCGGAAATCGAGTTTCTCATCTGGTAT
TGAGAATCGGATTTGTCTGGCGGAGGTTCCCCCGAATGAGATGTTGCGGG
GAAAGAAAAGCTGCAATGAGATTTGCTGTCGTGGCCGAGGTTGGAGATGG
GTGCAacgcaaaattaaaaagaattgTCAGTTCAAGTACTGTTGTGAAGT
CATTTGTGATGAGGAGCTGAAATGGGTCAAAGAACATTATTGTTTGTGAA
TACTAGAACAATAGAGTATTTGCTTGTAACACAATAGATAATTGTTTACA
GGGAATGTGTACGTTGACTGGCGAACAACATTCGGAATCATTGGAAACGA
ACGATGGAACAATCTTAATTTACCAAGAACATCTTTGATTAATGGGGAAA
ATCTGCGATGAATTGTTAAATGAGTAGCAAAGCAATAAACATTACAGACC
ATCAAAAATTTCCCAAACATCGACAAGTTTGCATCAGTACCAAATATGGA
TGTTGAAGTACAATAATCTTTAATAAATACGAGGCGtggtgaaattttaa
acacgtCCCTTTCAGACTGACCCGgcgagaacatttttaagccgACGCGC
AGTGGGGATAAATTCCAACATTTTTCTAACTGCGACATTTCTTTTGGCCA
ATTCTTCCTGGTGGTAGCGGTTTCCATCGGCTCTGTATCTAAGGTGTTAT
AAATGATGCacaaaaatcaaagattttggacTACAATTCTTTTTATGTTA
AATGTATAAAGTTTATAAACTGTTTATGCGCTAACTATATTTTGTCCTAA
GTCCTAGGAAGGACTCATTCCAAGTCNcaaaattaaaaagaattgTCAGT
TCAAGTACTGTTGTGAAGTCATTTGTGATGAGGAGCTGAAATGGGTCAAA
GAACATTATTGTTTGTGAATACTAGAACAATAGAGTATTTGCTTGTAACA
CAATAGATAATTGTTTACAGGGAATGTGTACGTTGACTGGCGAACAACAT
TCGGAATCATTGGAAACGAACGATGGAACAATCTTAATTTACCAAGAACA
TCTTTGATTAATGGGGAAAATCTGCGATGAATTGTTAAATGAGTAGCAAA
GCAATAAACATTACAGACCATCAATTTCCCAAACATCGACAGGTTTGCAT
CAGTACCAAATATGGATGTTGAAGTACAATAATCTTTAATAAATACGAGG
CGtggtgaaattttaaacacgtCCCTTTCAGACTGACCCGGCGAGAACCT
TTTTAAGCCGACGCGCAGTGGGGATAAATTCCAACATTTTTCTAACGGTG
ACATTTCTTTTGGTCAATTCTTCCTGGTGGTAGCGGTTTCCATCGGCTCT
GTATCTAAGGTGTTATAAATGATGCacaaaaatcaaagattttggacTAC
AATTCTTTTTATGTTAAATGTATAAAGTTTATAAACTGTTTATGCGCTAA
CTATATTTTGTCCTAAGTCCTAGGAAGGACTCATTCCAAGTCCTTGGAAA
CGAATTTTTctattctttgaaaaattgaaataatattCCCAATACTTAAA
TTAAGTAATATTTTTGttgagttttgattttaatttttattatttcaatt
ttttacgtattagttttttttgtaagagaGTCGAGTGGAATTGAGAAAGA
CATGctatttaaaatttcaaagttgatataagttattttatttGTAAGCT
AAAG
Run BLAST on NCBI

transcript from alignment at sc0000616:47759..56330-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027335 ID=TCONS_00027335|Name=TCONS_00027335|organism=Clytia hemisphaerica|type=transcript|length=8572bp|location=Sequence derived from alignment at sc0000616:47759..56330- (Clytia hemisphaerica)
TTGTATCACACCTTTGATGATGATTTGTGGTTATTTATCGTATCTAATGG
TCAAACAAATGGATGAAAAAGAAAAGAAAAAAAACAAAAAAGGTAATTTT
TAAGTTATTTTTTTGTTTTGCTAAAGGTTGATTGTGATCAGATCAGATTT
GGTGAAAAGTGAAATCGGATCAAAAAAAGAAAACATGTGCATCTCTAACA
AAACTAAAAATGTGTAAAATCTGCAAGATTTCAAAAAAGAGACAATTTAA
ACAAAATAATGAAATTTGATTTTTCTTTACAGCAGTGAAGTCTTCAAACA
AATTAAAAACCAGAAGAAAAGTTGCAAAAGCTGATTGATGTGTTGGAAAA
TTAGGTGAATAATTTTTCTTCATTTTACAGAATTTTATGTTTTTTATATG
TTGACCTGATTTATAAAGCATATAGTCATCATTTTCTTGTACAGTTGTTT
TTTGAGGGCTGTTCCTCAACACAACTATAGAGCTTAAGAGGTAAAAACCA
TCGCGATCTTATTTCGAGTTAACTTCTGCCAATTGTATTTGAACCAACTG
GCTGCAAAGTCTTGGATACATTTTTCGAAATTTTGTCCACAGATTTTATG
GCCATGTCTCCTGAAGAGTTGACCTGTTGTTGAACCTTTAGCTATGGAAT
ATTTGAGACTTAAAAAACGATACTATAAATTGTAGAGAGACTACAGTAAA
ATAGTAATACATATTTTTTCTGTTATTTTCTCAAGGATTATCAATTATGA
AGAAGAAGATTATCGAGAAATATTTTAAGACATCTTACGAACAAGAATGT
CAAAGTCGAGGGTACGAAAAATTGTTAGTTATTTATACGAATCAAGAACG
TTTTAAAAAAATGCAATGATTTCAATATAAATTATGCAGGATTACACTTT
TTGAAATTTATTTTTGTAAATTAAAGATAGTACATTATGACTAATTGAAC
TAAAAAAGATCATTTTTATTTCATTTTTATACCTTTAACCTGTCTCAATT
TTTCCATACAAGACTCTTTGAACTTTTAGGTATAAGTCATATTCCTTTTT
AAAAGCATTTTGGATTATGAGCGCCAAGTTGTAGTGCTAATCTACTTCCT
TATTCGATTAAGAATCAGCTACATCTTAATATCAATAAAAATTCATAAAT
TATGACGACATCATTTCTTAAACTTTGTTTATATAGTGTGTGATCGATTT
TTCACTAATACTCTATCATGATAAACCCATAATATTTTGATGTGAGAAAT
ATACTAAAAATTTTGCGGTAATCGTGATTAAGTGGGTAAAAATTCATCTT
CTCCAAATACCTCCTGGTGTTCCATTTCACAATTGTTTGAAACTACTTTT
TGCAGTGATCCATGAAATTTTGCTACCTTCATGACCCTTTTTCAATCCTC
ATTACAATGAAAAGTCTGTCCGAAAAAAGTCCGATCAGAATCTTATACAA
ATTGAAATCATCCTCATAATTCATCTCATTTTATGTAGAAAAAATTATTT
TTGTCTAGTAATATTTATAGGTATATGTTTTTTTTCGAATGTTCTTAAAG
TTTTAAGCTTAAAAATATTCTTAAATTATTTGTGCAATTTCCAAAGATAT
TGGGTGTTTTAGAGTCCATGAAAAGTTTAAATGTTCTTTACTTGCTCTTA
AAATTTCGGCCAACTAAGCCTGAAGTACTAAACCGGAGAGACTGCAGACT
TTACTAAAAACTGAAAATCTAGTTTTGAATTTTTATTTTTCATCAAAATT
TAACTAGTCTGTTATTAGTGCTTGTTATTGTACTTTGGACATGGAAAAAG
TTTTACACACTTTTAAGTCCCCGAACCTTGTCAGAATGGAGGCTCTAATA
AGGTTTAGTTTGCACCTTCTAAATCCGACAAAATGACGTCATAGAAAAAT
GTCATTCCAAAGTTATAAAAGATAGTTAAATTCAATAGCAAAACTAATTA
AACCCTGACATATAAAAAGTAAAGCGAGGTACATTTTTCTAGATGTTGAC
TAGATGGTCAAATTTATTAAGAATACAACACTAATTAATAAAAAGTAGGC
GTCATTTAACGTATTAATGTTATTTCCTTTCCGCGCGTTTTTTAACGCGA
ACGCGTAAGATTTTGCACTTGTCGCGCGATAAACTAATTGGCGCGACTCT
CCTTCTCTAGTACGTAGTACCCTGAAGGAGAGTAGCAAACTGAGTAAGAA
TAAAAAACTTCGATTGTCAAAATATCAAGAACAAGTTAAGAACATTTTGG
GGAGTTACAGACAGAAAATATGAAGATTTTTCAAGCATAAAACTCAAGTT
AAGAACATTTGCAGGCTTCGAAACTTTTTGACGTTCTTATAAAAAAACGC
GTGTATAAATCTACATTTTGATTTCTATCAAAAGAGACTAAAGAGGTACT
AAATACTTCGACTTGAAGTAGACCGTGCGAATTTTCGACCATAAGTACTA
CATTTGTTTTGAGACCCGAAAAAAGATCATTCAATTATAACAAAAATATA
GTCAAAGTCAAAAAAAAAGAAATAGAACAAAATAATACATATGAAACAAA
AGCTGTTAATTTTTTGTTTGAAATATTATGTGTAGTCAGACAGATCTCGA
ATAGTCCGATTTTCAAACCTCTATACTATTAGCCTAATGAAAACATGTTA
ATCAATAGTACTACAGCATTTTTTTCTCTCACTTTTTTATTCATATTCGG
CAAATTAGATCAAAAAAGATACCTTTTGATATTAAAACAATAATAAGACA
AAAGAAATAAAGAATAGGTCGAAATGAAAGAAAAGAAATTCCAACATTTT
ATTAATACATATATGTGTATCAATCAAAAAAATAAATTTCAATTTGTCTT
TTAATTTTTTCTTTACTTGTACAATTTTTTTCACGGCGAACTAAATTATC
ATTTTGTTTTGATTACGCTATTTATTCGGCAAGACGATATTGATTAGATT
TTAATTGAGAGACTCAACGTATGCCAGGCACACAGCTAATTGGTCGTTAT
TACTCTGACGATCTCCATGTTACTTGATTAGGAGCAAACTTGACTGGCGG
AACATATAAAATACAAAAAACCGTTTTGGGTACCACTTTTAACGGATTTT
TTTTGGAAATGAGACTCAAGAAATAATACATACTAAATATTGAATTTTTA
CACTGAGCAAGGGACAATACAATGGATTTACAACATTTAATTTTGTTGGT
TTTTTTACCGACTTTTGTGACCTCTTATAGCTACTGGTGGTAGGTGTAAC
ATTTTGGGCATTTTCAGTAGGGTATTGTTTCTGTACAGTTTGCATTCGCT
AATTTTAAGTTGTTGATTGTTTTTTTTTTCTTTTTTTTTTCTCGATAAGT
TCCCGTTTTCAATGTAGATTTTGTAGTATCTTGAAAGTTTTTAATAATAT
TATAAATTTTAAATGACATACTTCAAAAAGATTCATTCGCTGGATTAGGT
GAGACGCGAGACCAATTCTACAGGCCCGACCGACCCTGAAATTCCAAAAG
TCGAAATTGAAATAAAATAAAATTGATTTTGGTAGTACATTTTTATTTTC
GTTGCTTTACAGACTGCCAAATTTTCAAAATTTTTGTAGTTTTTCCAAGT
TTTGAAAGTTTTATGTTCAATTTTTCATTTTATCCATGAATTCGAGCTTT
TTGTGTCTTTCTATTTTCTATTTTGCATTTTTGTCAAGACGTAGTAGTCT
ATGCTGCCTTTTTAGGAAATTTTATTGGTGAAATTCTATTTTTGTTTATT
TTTATTTCTCGCCGAAAGACCCTCTTTTTGGGGTAGCTTGACCCGTAAAA
CAACAAATTTAATTGGCCTCGCCTTACTATTTCTAAATTTGACTTCTTAA
AACAGGTAGCATAAGATTCCTTACAAAGAAATTAAATAAGCGATCATTGA
TATTATCAACCATAATCTGAGTCTCACTTATATATTTCCCCACATATTTT
CTTCCCCAACTCACCACAGTTCGACATTTCCACTATTTGCTACTTAGCAG
GTTTGCTAAGTATAGGTTCAAATAAGATTCTATTTTTCATCAATTTTTAC
CTTACTTGACAAGGAACTTGTGTACCAAATTTCATTAAAAAACACCCCTC
ACAGCCCCGGTGAAACTTTTTGCCGTAGCGGGGATAAGAATTTCTATTGA
AATCTCAAGGGGGGATAAAAATTATATTGTTCCAAGATTAAAAAATCCAG
TGATGGTTTTGGAGTGGAAATTTTAAACATTGAATTTCGAATGGGAATAT
AATGAAAGCTAATTTCCCAGTGGGGCTGAAATCCTCGGGTATTTTTTCCA
CTGCGGATAAGGACAACATTTTTGCCGAATTTTCTATAGGGGCTGGGGTT
CCAGCCCGTCTGTAACACAGGGTTATTTAAAAAGACCAAAGAACAAAAAT
TAAGGGGTGGTACAGGAAAAGCCCTAGTTCTGAACGGCTCTTAAAAGCCT
AGTATGAATAGAACTAAACTAATGGGTAACTTTGCATCTTTGTGGCTCTA
AAAATAAACCCGGTGGTGAATTTTTCAATTTTCCAAATTTGTTTAAAAGA
CCATTTCACCCTTTTTTCCCATATTTTCCGTAAAAAAGATAAACGAGTCT
GAACGAATTTTCTGTCGCGGCGTCTACCAGACCATTTTCATAAAAAAGTT
GCCTGCTTTTCTACAATACATTGCAGACCTCACGCTATAAATAAGATTCC
GACAAACTTCGATTTCACTTTTAAGGCCCCACTGATTCCAACATACCTAA
TGGGAAAAATCTTCCTTAATTTTTAGGAGGTATGCATTGATGGATGTGTT
TTACTTTGAACGTCGAGGAGCTTACGGCCGTTATTTACGACAAAACCCAA
GTCATAGCGCCTACGTCAATAAAGGAATAAAGAGAGCTGTCAGTGAATGT
CAAAAATTGTTCAAATATNCAAGTCATAGCGCCTACGTCAATAAAGGAAT
AAAGAGAGCTGTCAGTGAATGTCAAAATTTGTTCAAATATAACAGATGGA
ATTGTCGGTCAAATAACCCTCATGAGCCGTTTGGTGACGTTGTAAGAAAA
GGTACGAAGTCCTTCAAACAAGTTAAATTAATGATAAATATTAGGAATTT
CCTGTTTTAGTCCTTGTGGTTCCTTAAAAAGAATTTTTTCTGTTTTATTT
ATATCAAAGGGATCCTAATCGATCGTTCTATTTACTCTAAGACTCAATTT
GAGATGAATTTTTCTTTATATTGAAAATAATACGGAACTGCATTTATAGT
AGGAGAATTTGTTCATTTTTTTTAGTTCGCTCGATTTTGAAAGATGTTTT
ATATTTTTGGAAAGCTCTCAAAAAAATTAAGATTATAGAGATATATTGCG
AGAGTGCGAGAGTGGGTGATTTCTGTACCTAACTCGAGATATTAACCCTT
AAATACAGTGTCTTCAGCTAGAAGCAGCTGTTTTGTCCAGTCTTTGAGCT
TTTTGGAGCTCAATATCTCGAGTTAGGTACTGAAATCACTTTCACTGCTA
TAATTGCAATATATCTCTAATATTAATTTTTTGAGAGCTTTCCAAAAATA
TACAACAGGTCTCTATTTTCTACAGCTAAGATTTTCATTAATTTCTGACC
CTATAATTTATTCCTGAGACCGTCATATTTATCCGAAAATCACACCAAAG
TGTCCGAAAAAAATTGGCACCCAAGTTATTTTGATTCCCCTACCCCTTAG
CTTTCCAAAAATGCATAACGAATGCTTTGACAAAAAAATCGAGCGATTTA
ACAAATTTACCCCTACTATTAATTATAAATTTATAAAGTATTAAGTAATA
TGTATCAAATCATCTCTGTTTTTAAGAATGCTGTTATTTTTTGCAAATTC
CCCTGCACGATACTTCAATTCTTTATACTTTGCAGGGTGTCGCGAGACAG
CGTTTGTCTATGCACTCGCTTCAGCTGGTCTAACATACGAGATGGTTCGT
GCATGCTCCGAAGGTCGTATTGGATGTCAACGCACGTGCGCAGAAAAAGT
TAACATCAAAGAAACACGACTTTTGAATGGGACACATGCAATCAACGATG
CTTGTAATGATAATTTGAGATACGGTTTTAGGACTTGGTACGATGTGGTG
TTTAAAGGCGAGCCATACAGTGATATCAGAGCTGTCTTTAATATCAAAAA
CAGCATTGTGGGCTACAAGGTAGGTGAAGGTTTCTTGAGTCAGAATTTGA
GAGTATCTTCTTGACGAAATAGTGCCGAGAAGGTTTAAAGAAAATCTTGA
CCAAAAACTGACTCTAATAGACGATATCGGCTTAACGAAATTCTCCCCGA
ATGATTACCCATGATGCATTGCGCAAAAATATTCAGTAAGTCAATATTGT
CTGTGAATTTTTTTGCGCAATGCATCATGGGTAATCATTCGGAGAGAATT
CGGAAAGCCGATATCGTCTATTGGAAATATATTCCAAAATTTATCTAAAA
ACTTTTCAAAAGACTGTTTTTAAGACTCTGATTTACGACCCCGACTTTTT
TATAAGGCAATAAGGTTTATATTTTTCCGTTCTTTTAATAGCAAATTGAA
AAATCAACTCGTCTTTCATGTCAATGCCATGGTGAATCAGGAAGTTGTCT
TGTCCGAATTTGTTCAAAAAGAATGCCACCGACTTTCAAACCTATCGGAC
AACACTTATATGATTTATATGAAAAAGCAGTTTACGAGAGACCTAATCAA
CGAACAATAGAGACTGACGCTAACAGTTTAATCCGACATCGGCAACAACC
AAAAATACACGTCAATCATCTACCCGTCGATGACGCCGACACACCGCAAC
AACGTAGCGTCAACTCCGTAAGAAGCCGGCGTTCAGATATGTTATTTAAC
GTTGAAAATTTGAAATTTTATGAACATTCGCCCGATTTTTGTCGGAAATC
GAGTTTCTCATCTGGTATTGAGAATCGGATTTGTCTGGCGGAGGTTCCCC
CGAATGAGATGTTGCGGGGAAAGAAAAGCTGCAATGAGATTTGCTGTCGT
GGCCGAGGTTGGAGATGGGTGCAACGCAAAATTAAAAAGAATTGTCAGTT
CAAGTACTGTTGTGAAGTCATTTGTGATGAGGAGCTGAAATGGGTCAAAG
AACATTATTGTTTGTGAATACTAGAACAATAGAGTATTTGCTTGTAACAC
AATAGATAATTGTTTACAGGGAATGTGTACGTTGACTGGCGAACAACATT
CGGAATCATTGGAAACGAACGATGGAACAATCTTAATTTACCAAGAACAT
CTTTGATTAATGGGGAAAATCTGCGATGAATTGTTAAATGAGTAGCAAAG
CAATAAACATTACAGACCATCAAAAATTTCCCAAACATCGACAAGTTTGC
ATCAGTACCAAATATGGATGTTGAAGTACAATAATCTTTAATAAATACGA
GGCGTGGTGAAATTTTAAACACGTCCCTTTCAGACTGACCCGGCGAGAAC
ATTTTTAAGCCGACGCGCAGTGGGGATAAATTCCAACATTTTTCTAACTG
CGACATTTCTTTTGGCCAATTCTTCCTGGTGGTAGCGGTTTCCATCGGCT
CTGTATCTAAGGTGTTATAAATGATGCACAAAAATCAAAGATTTTGGACT
ACAATTCTTTTTATGTTAAATGTATAAAGTTTATAAACTGTTTATGCGCT
AACTATATTTTGTCCTAAGTCCTAGGAAGGACTCATTCCAAGTCNCAAAA
TTAAAAAGAATTGTCAGTTCAAGTACTGTTGTGAAGTCATTTGTGATGAG
GAGCTGAAATGGGTCAAAGAACATTATTGTTTGTGAATACTAGAACAATA
GAGTATTTGCTTGTAACACAATAGATAATTGTTTACAGGGAATGTGTACG
TTGACTGGCGAACAACATTCGGAATCATTGGAAACGAACGATGGAACAAT
CTTAATTTACCAAGAACATCTTTGATTAATGGGGAAAATCTGCGATGAAT
TGTTAAATGAGTAGCAAAGCAATAAACATTACAGACCATCAATTTCCCAA
ACATCGACAGGTTTGCATCAGTACCAAATATGGATGTTGAAGTACAATAA
TCTTTAATAAATACGAGGCGTGGTGAAATTTTAAACACGTCCCTTTCAGA
CTGACCCGGCGAGAACCTTTTTAAGCCGACGCGCAGTGGGGATAAATTCC
AACATTTTTCTAACGGTGACATTTCTTTTGGTCAATTCTTCCTGGTGGTA
GCGGTTTCCATCGGCTCTGTATCTAAGGTGTTATAAATGATGCACAAAAA
TCAAAGATTTTGGACTACAATTCTTTTTATGTTAAATGTATAAAGTTTAT
AAACTGTTTATGCGCTAACTATATTTTGTCCTAAGTCCTAGGAAGGACTC
ATTCCAAGTCCTTGGAAACGAATTTTTCTATTCTTTGAAAAATTGAAATA
ATATTCCCAATACTTAAATTAAGTAATATTTTTGTTGAGTTTTGATTTTA
ATTTTTATTATTTCAATTTTTTACGTATTAGTTTTTTTTGTAAGAGAGTC
GAGTGGAATTGAGAAAGACATGCTATTTAAAATTTCAAAGTTGATATAAG
TTATTTTATTTGTAAGCTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015382XLOC_015382Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027335-exon-sc0000616-1575043694:56239..56330TCONS_00027335-exon-sc0000616-1575043694:56239..56330Clytia hemisphaericaexon
TCONS_00027335-exon-sc0000616-1575043694:55977..56048TCONS_00027335-exon-sc0000616-1575043694:55977..56048Clytia hemisphaericaexon
TCONS_00027335-exon-sc0000616-1575043694:51280..51554TCONS_00027335-exon-sc0000616-1575043694:51280..51554Clytia hemisphaericaexon
TCONS_00027335-exon-sc0000616-1575043694:50162..50445TCONS_00027335-exon-sc0000616-1575043694:50162..50445Clytia hemisphaericaexon
TCONS_00027335-exon-sc0000616-1575043694:47759..49789TCONS_00027335-exon-sc0000616-1575043694:47759..49789Clytia hemisphaericaexon
TCONS_00027335-exon-sc0000616-1510915933:56239..56330TCONS_00027335-exon-sc0000616-1510915933:56239..56330Clytia hemisphaericaexon
TCONS_00027335-exon-sc0000616-1510915933:55977..56048TCONS_00027335-exon-sc0000616-1510915933:55977..56048Clytia hemisphaericaexon
TCONS_00027335-exon-sc0000616-1510915933:51280..51554TCONS_00027335-exon-sc0000616-1510915933:51280..51554Clytia hemisphaericaexon
TCONS_00027335-exon-sc0000616-1510915933:50162..50445TCONS_00027335-exon-sc0000616-1510915933:50162..50445Clytia hemisphaericaexon
TCONS_00027335-exon-sc0000616-1510915933:47759..49789TCONS_00027335-exon-sc0000616-1510915933:47759..49789Clytia hemisphaericaexon
TCONS_00027335-exon-sc0000616-1491911889:56239..56330TCONS_00027335-exon-sc0000616-1491911889:56239..56330Clytia hemisphaericaexon
TCONS_00027335-exon-sc0000616-1491911889:55977..56048TCONS_00027335-exon-sc0000616-1491911889:55977..56048Clytia hemisphaericaexon
TCONS_00027335-exon-sc0000616-1491911889:51280..51554TCONS_00027335-exon-sc0000616-1491911889:51280..51554Clytia hemisphaericaexon
TCONS_00027335-exon-sc0000616-1491911889:50162..50445TCONS_00027335-exon-sc0000616-1491911889:50162..50445Clytia hemisphaericaexon
TCONS_00027335-exon-sc0000616-1491911889:47759..49789TCONS_00027335-exon-sc0000616-1491911889:47759..49789Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000616supercontigsc0000616:47759..56330 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.257989	0	0.400879	0	0	0.182618	0.106876	0	0.0811639	0	0.175958	0.422056	0.798706	0.363584	0	0	0.786986	0.497207	0.779845	0.74015	0.690604	0.938282	0.252171	0.105838	1.32327	1.47518	0	0.0953388	0	0
Blast
[Close]
BLAST of TCONS_00027335 vs. Swiss-Prot (Human)
Match: WNT4 (Protein Wnt-4 OS=Homo sapiens GN=WNT4 PE=1 SV=4)

HSP 1 Score: 145.976 bits (367), Expect = 1.548e-37
Identity = 106/359 (29.53%), Postives = 166/359 (46.24%), Query Frame = 1 
Query:  265 IKRAVSECQKLFKYXSHSAYVNKGIKRAVSECQNLFKYNRWNCRSNNPHEPFGDVVRKGCRETAFVYALASAGLTYEMVRACSEGRI---GCQRTCAEKVNIKETRLLNGTHAIN------DACNDNLRYGF---RTWYDVVFKGEPYSDIRAVFNIKNSIVGYKQIEKSTRLSCQCHGESGSCLVRICSKRMPPTFKPIGQHLYDLYEKAVYERPNQRTIETDANSLIRHRQQPKIHVNHLPVDDADTPQQXXXXXXXXXXXDMLFNVENLKFYEHSPDFCRKSSFSS--GIENRICLAEVPPNEMLRGKKSCNEICCRGRGWRWVQRKIKK--NCQFKYCCEVICDEELKWVKEHYC 1293
            I+R V  C++  +       V +G + A+ ECQ  F+  RWNC + +    FG VV +G RE AFVYA++SAG+ + + RACS G +   GC RT                H ++        C+DN+ YG    +++ DV  + +  S  RA+ N+ N+  G K I    R+ C+CHG SGSC V+ C + +PP F+ +G  L + ++ A    P +      + +L+    Q K H +                             E+L + E SPDFC +   S   G   R C      N+  +    C  +CC GRG+   Q ++ +  +C+F +CC V C +  + V+ H C
Sbjct:   50 IQRQVQMCKRNLEVMDS---VRRGAQLAIEECQYQFRNRRWNCSTLDSLPVFGKVVTQGTREAAFVYAISSAGVAFAVTRACSSGELEKCGCDRT---------------VHGVSPQGFQWSGCSDNIAYGVAFSQSFVDVRERSKGASSSRALMNLHNNEAGRKAILTHMRVECKCHGVSGSCEVKTCWRAVPP-FRQVGHALKEKFDGATEVEPRR---VGSSRALVPRNAQFKPHTD-----------------------------EDLVYLEPSPDFCEQDMRSGVLGTRGRTC------NKTSKAIDGCELLCC-GRGFHTAQVELAERCSCKFHWCCFVKCRQCQRLVELHTC 350
The following BLAST results are available for this feature:
BLAST of TCONS_00027335 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WNT41.548e-3729.53Protein Wnt-4 OS=Homo sapiens GN=WNT4 PE=1 SV=4[more]
back to top