TCONS_00027232 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027232
Unique NameTCONS_00027232
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027232 ID=TCONS_00027232|Name=TCONS_00027232|organism=Clytia hemisphaerica|type=transcript|length=2564bp
CTTGATGTGATATATTGCACTTAGATGATTTGTTTTGCAGAAAAACACAG
AAGAAAGGAAGAGACACGAgaacgaaaaaataagaattgaTTTGCTGAGG
CCAGTGAAAGAATATTGGATATTTTACTGGAgttgtatttttttctaaaa
tggtTCAAACTGTCGCGGGAAGCTTCAAGCAACAAGTACTAGACGCGCAC
AATAGTTGCCGCCAAAAGCATGGAACACCACCCCTTCAATGGTCAGACGT
CCTAGCACAACAAGCACAGAGTTGGGCGGACAAGATTGCCAAGAAAGGCA
AATTCGAGCACTCCCCAAGCAAACTGAGGAAAGGACAAGGAGAAAATATC
GCTTGTGCTGGAGGAAAAGAATTGACAGGCGAAGATGCCGTCAAAATGTG
GTATGACGAGATCAAAGATTTCAACTTCAAAAATGTCAAGTACAATTCCA
AGTGTGGCCATTTCTCACAAATGGTATGGGTCAGTACAACCGAAATAGGA
GCCGGCAAAGGTACCGCAAAAAACGGTATGCAATTCGTAGTATGCCGTTA
CAATCCTGCTGGTAATATGCTAAGCGAGTTTAAAAACAATGTCAAACCAC
CCGGTGCACCCGCCTCTACAGCTCCACCTCCCAAACAACAAGCCGCCGCT
GCTCCACCTAAAACTCAACCACAGCccaaaccaatcaaatcacaacccat
tcaaaaatcaaaaccgAAAACTCAAATCGTGGAAAAGCCAAAACCAGTTA
AAGTTGTGAAGAAAAAAGCAGACcagaaaccaaaaacaaaacttaagaAC
GTTGAGCAGCCTATAATTCCAACAAGAACACAAGTGGTTCATGCAGCTCC
TCCGCAAATGAACAGAAAAACAATGGTTTTGAAATCAGAGaagaattttt
ataagaaaacaacaacaactatAACCAACAATAATAACATTGAGCCGACT
ATCACAACCAATCAGCCAATCAAAGTGAAGCAAAATCAACGAGCTCCTCC
AAAATCGAATGTGAAAGTCACTGAAAAGcACATCAGATACGACAGCACCT
TGAAACAAACCAGTGGCAACAAACTCATTTACGTCATGGATTACATTACT
GAAGTCAAAGAAGTCAAGCCGAAATGTTCCACAGTTCAAGTCAAGAATAT
TGGGAAAGAAGCTAAAGTAGCAATGTGGAAAACCAAAGAATATTTAAAGA
TAGGTCATTCATACACTATCATGCACCACTGTCTCTCATGAAGATGTTCT
TTCGTTGATTTATAAGACTCTGTACCAACTGTGAATAATCTCCAATCTTT
TGGGAGGAAAATATTATAATCGTTTTGAATTTGGAAATCTTACCGTgata
ttgattttaaaaattttgtttaagcaattatctaatgttcacaacgtcca
tataacgttagatgaacgttgcaACAACCTTGTGTAAAAGCtggaaaata
tattcaaagtgTGAAAACGGTACACTCACCCTATACACACCCGATACATG
ATGCCCGATTATGCCTAGGTGCACCCCTAGTCTTAACAACTACTTTGCAT
AGGGTTTTAGATGTTACTGGGACCAATGAATTGTAAATATTCGATGTCTT
CGCTATATAATGAATCTTTTTCAATGATATTACTTTCTTgagtttaattt
tttaaatggaATTTTTAGATTGATTAGGACTTTTTTTGTTCTCATGTATA
TTAATTTATATAGATTCTAACTGGCTGGGAGATATTGTGCGCCTTTTCCT
ATATACTAACTGTGATAATCTTtgcattattttttcaaagtattgatttt
gttaactttttgttcttaatataaaaagtttcattttgtgTTTCTTCTTT
GCATGTGTATTTTAGATTCCGCAGTGCCTTAAATGTGTTTGATATCTTCC
CTTCGAAGCTTTGTTttttgtacagggtgtccctaattaaagtatcgagt
ttgaacatgcgattgagtagaaaagtttgtgtgtgttatcgctaaaatat
aagaacgttctccatcacacaggtatattacaaaaggtagttacaacgta
taaattaatcgtaatgacaaagaaaaaagagggagagcttaaaatacaat
tttgtgaacacgcacataaaactttctactcatagttgtgtttcgactcg
atactttaattagggacaccctgcaGTTTGTTCttccatggaggtataaa
gaaacaggagaagtatgctattgtaaccaagctcgccctacgatggGCTA
CGATTAAagaagttacgatgtatgcatgcccataatctcatatatcgtgc
attttcaATGAGCTCTTCTGctatccataggtgaaatcttattggctcat
ttaagctttggaaattagatgagacgagattcattgtttcatttggacta
aaaaagggcgtgtaaacttggcaatgcttcatcaaatgataagacttttt
tatcaatgttttctttaaggtgaaccTTATTGCTTGATAtattcctccaa
aattctccagcgactttatgtctacaaattaagtctgaaattgtgtgtgc
ttataaagaacctT
Run BLAST on NCBI

protein sequence of TCONS_00027232-protein

>TCONS_00027232-protein ID=TCONS_00027232-protein|Name=TCONS_00027232-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
MVQTVAGSFKQQVLDAHNSCRQKHGTPPLQWSDVLAQQAQSWADKIAKKG
KFEHSPSKLRKGQGENIACAGGKELTGEDAVKMWYDEIKDFNFKNVKYNS
KCGHFSQMVWVSTTEIGAGKGTAKNGMQFVVCRYNPAGNMLSEFKNNVKP
PGAPASTAPPPKQQAAAAPPKTQPQPKPIKSQPIQKSKPKTQIVEKPKPV
KVVKKKADQKPKTKLKNVEQPIIPTRTQVVHAAPPQMNRKTMVLKSEKNF
YKKTTTTITNNNNIEPTITTNQPIKVKQNQRAPPKSNVKVTEKHIRYDST
LKQTSGNKLIYVMDYITEVKEVKPKCSTVQVKNIGKEAKVAMWKTKEYLK
IGHSYTIMHHCLS
Run BLAST on NCBI

transcript from alignment at sc0000611:150204..157378-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027232 ID=TCONS_00027232|Name=TCONS_00027232|organism=Clytia hemisphaerica|type=transcript|length=7175bp|location=Sequence derived from alignment at sc0000611:150204..157378- (Clytia hemisphaerica)
CTTGATGTGATATATTGCACTTAGATGATTTGTTTTGCAGAAAAACACAG
AAGAAAGGAAGAGACACGAGAACGAAAAAATAAGAATTGATTTGCTGAGG
CCAGTGAAAGAATATTGGATATTTTACTGGAGTTGTATTTTTTTCTAAAA
TGGTTCAAACTGTCGCGGGTAAGCTTTATTTCAATTTTTTTTTATAAACT
CGAAAAAAGTCGAATCTTCATAACTCAAAAACCAATGCGAACCAGTAATT
ATTAAGGAGAGTTTGATTAATAGATAGACNGTCGAAAACCAATGCTAACC
AGTAATTATTAAGGAGAGTCTGATTTATAGATAGACAAAATAGAAAATTA
GAAAAATTTATTTAAGGTTTGGAAGGGTTAAGTTTGACTTTCTTCGACTA
AATTATGTGCACTGATTTCGATTTATAATGCAAACTCATGATATACCTAA
TTTGAATATTATATACTATATATTATGACTTCTTTTGCATTTAATACACC
TCTCTTCGTCACTTTTTCCCACTCCAATAGTACTTTCATAAAAACTTTTT
GATGGTTTTTGTAGGAAGCTTCAAGCAACAAGTACTAGACGCGCACAATA
GTTGCCGCCAAAAGCATGGAACACCACCCCTTCAATGGTCAGACGTCCTA
GCACAACAAGCACAGAGTTGGGCGGACAAGATTGCCAAGAAAGGCAAATT
CGAGCACTCCCCAAGCAAACTGAGGAAAGGACAAGGAGAAAATATCGCTT
GTGCTGGAGGTATAACTTCTTTTTTACAACTTCAAAAGCAGAACCACTGC
GATGTACTGGTCTGGCTTAATTTTTAGATGGAGCCAACTGTAAAATTATG
TCAAAATTGAAAAGTGTCGATCTCAAGGCTAATCGGTGAAGTTTGCCGTC
AAGGTTCATAAAAATATGGACCCTAAGTGAACCCATTTAGGATGATTTAT
TTCGTCCACTAAAAAAATGGTGACTTTTTTTTTTAAATGGAGCTAAGATA
AATTTTAAAAGCTTTTTTCAAATTTTTATAAATAAGTCTCAACGAGGGGC
TGATTTTTCAATTTTTCTGTGTTTTTGATACAAGAAGAGGAGAAAATCCC
TACCTTTCTTGTTGTCAAACCCCCAACCCAGTGTATCAATAAGCTTAAGA
GAAAAATGTATTTAATGTAAATGAGCTCCTCGCATCATCGTTTTGGCAAA
GATGCAAAAATTTAATTGCCATACCTGATCCAAGGCCTCCACTCCTCATC
ATTAATTAGTTTAATAGCCCAATTATGCCTCAGAAACGATAGATGATTTT
CTCTGATAAAACATGAACAGTATCAAGCAATTATATGCTTTCCCTTTTAA
GAACTAAGTAGGTCTTTGGATATTCTTTTGGCAGTTTATCCGGTTAAAAG
TCTGGTACTAGCTTACTTAAGAGTTTATCTAAAAGTTTAGATATGATATT
TTTTGTCCGTACTTGTATGCTGGTTATATCATATCCCAAGTTGTTTGAAA
TTCCTTTTTTTTTCTCTGCTTGTGTTTTGTGCTTCTAGTCTTCATACGTT
CTTATGAAAAATCGAAAGTTGATTTTCTTGCACTCAAAACAAGCATCTAG
TGATTATGTAATTGAAATTCCTCTAGCGTAACCTGGTAATATTGATGCCA
ACTTTTGATAGAGACATATTTCTTTAATGCATCTCCAATTATGCAATCTT
AAGTTTGGTGCCAAATTGAAAGGTCTATCCAGCCTTTTTAAGTTACTGTT
AATGATACTGTAACCACTAAACCTATTCAACTGAAAATTTTATTTTACAC
GTTACTTTACATAATGTAGAATGGCGTCCTTTAAGAAAATTTTATATCAT
CTTTTCCTAAAGCGTTCAACTTTTCTTATTCTCTTTGTGGATTGTTGCTT
ATCGCATCAGCTAAATTATATAGCTAATACCATGCTTATAATTAATATTC
TTATAAAAAATAATAAATAACTTGTATTTAGAACAGGAAAATTCGTCTTG
GCTAAAATATCGACCAAAAAAGCTCTATGTGGTATTTAGGAACAGTTTTG
TGGTTCACAAAAGAGGAATTCCTTCACGCGGATCCATTTTTTTTTCAAAA
TAAAACAAAACAACCCACCGTATTACTGCGAATAAACGCCCCGGGTATTT
ATTAATTTTTTTTATTTCAGGAGGGGCGTTTATTCGAGGAGGCTTTTGAA
AGAATGGGGCGTTTATTAAATAATCTTTACCCAAAGTCACTTTAATAAAG
TGAATGGGAACCTTGTTTTGCCTTTTCCTTTTTCATTCAGTTCAAATGTG
TCATTTTATAGATATAAAAAAGGGTTAAAGTTAGTATGAACACTGAATGA
ATAATATGATTCTCCCTTACCTGTTCCAAATGAACGCCCCTCCTAGAGGG
GAGCTATTTATTCGGAGGGAAATGTTTATTCGAAGGGTGCGTTTAAAAGA
CGAGGGCGTTTATTCAAACTGATACCGTAATTTGGTTCGGTGAAATTACT
TTCTGTACTGAGGGTCGCTTGCGTTTCGAAGTGGCATCATGTAGACCTCT
GTCTTACGTCAGCCTCAATGGATGCAATGGAGATATTCTCATTCTCAACT
CAAAAAACCTAGTAACACCCCTGTGTCACAGACCCGGTGGGCCCCCCACC
CCGGTGGAAAAATAGGCCACAAAATCGTCCTCGGTGGAAAAAATATCCTA
CAATTTCAACCCCACTGGGAAATTGCTCTATGATTTTATCTCCATTGAAA
ATTGAATGTAAAAAATTGCACTCCAAAACCATTCCCGGAATTTTCGAGCT
GGAAACAATAGATTTTCTATCCCCATTGGCATTTTGATAGAAATTTTCAT
CCCCACTGACTGAAAAAATTCTACCGGGGCACTGAGACAGGGGTGTCTAG
TAGGAATGGCTATGGTGTGCAATTATTTTTCTATTGAATTTCGGATTGGG
ATGAAATAAAGTCTATTTTCCAGGTGGGCTGAGTTTGTAGGGTATTTTCC
CAGTTAGGACGAAAATTAAACCAAATTTTCCAGTGGGTAGGGTGACCCAC
CGGGTCTGTGACACAGGGCTCTATCATGTGTGGCTCAGAAAATTGGCTTT
CAATAATACCCCCTTTTATGTATTTGCCTCACTTCAATCCTTAACAAAAT
AAGTCGATCTTTTCAAAAAAATTTCTTAGTTTTTTTATGGGCTTTATTTT
TTATGCTTTATTACCTAATCCAGCCCCCACCCAACCTATCCTTTAACAGT
GCAGTGTCTGTCTTAACAATTGTAAAGAATTAAGAAACAAGAAAACTAAA
AAATTGGGAAAAGAAAATTTGTCTATGTCTCCTTTCAAAAGTCCAGAGTA
TTATATACCTAATATTTTTAATCAGTGGCAGCGGACCAATCGGGCCAACC
CTTTTTAAAAGCAAAAAGAAAATTTACCAATAAAGCCAAACTTTTTTAGA
TAACCATAACCTGTTTTAGGCGGTTTAGAAGGGCTAAAATTCCAAAAATT
ATTGGTGCCTCCTTAGTCAATATATCATGGCTCTATCAATTTCAAAGGGG
AGCCGTGGCCCCTGATGTAAGCCAAAATTTTACTCAAATTTTTCGTTTCC
CGTAGGAAAAGAATTGACAGGCGAAGATGCCGTCAAAATGTGGTATGACG
AGATCAAAGATTTCAACTTCAAAAATGTCAAGTACAATTCCAAGTGTGGC
CATTTCTCACAAATGGTATGGGTCAGTACAACCGAAATAGGAGCCGGCAA
AGGTATGAACTTACTAGAGTAGAAAATTTCTGTAACCATTTTAGACTCCT
GAATTCTAGGAAAACCTTACTTGTTAATGCTTTAAAGTGTGGGGGTACTT
AGGCAAAATGGGTGCATGTTATGTGCGAGCCATAATTGTATTTCTTCAGA
GCCACCACACGATAAGTGTAAAACTTTGCAGGGTGACTGAGAAAGGGGTG
TTTCTAATAACAAAAAAGTCACTCAAAGGTCACTTAACAAAAGCAAAGAC
TCATTACCCTTTTGAATAAAAAAACAACAACAAAATGTTATGGTTAGTAT
TACAAGAAATCATCATCATTAAATACCTCTTATTTCTTAGTTTCTCGAAA
GACATCGAGATGTTTTGGCAATTATATTAGCTTGAGCCATCGCTGAAAAA
CACCCTCTGAATAACGAGATTTGTTGATGATGTAATGATGATATGTAATG
CTTTTTAAACATGACTTAATCTTTTCCGAAAATCCCTCTTAAATGCGATA
AAAATCCAGAGACCTTCAGGGCTGTTCTTCTTGCAAAATTAAATAGATTA
GGCAAGGGTACGGGTAAGGGTAGCGTGATTATTTTTTTATTCCGTAACAT
TTTAAAATTTATTTTACTTTTTTCTCTTTGTAATCTTTTAAGGTACCGCA
AAAAACGGTATGCAATTCGTAGTATGCCGTTACAATCCTGCTGGTAATAT
GCTAAGCGAGTTTAAAAACAATGTCAAACCACCCGGTGCACCCGCCTCTA
CAGCTCCACCTCCCAAACAACAAGCCGCCGCTGCTCCACCTAAAACTCAA
CCACAGCCCAAACCAATCAAATCACAACCCATTCAAAAATCAAAACCGAA
AACTCAAATCGTGGAAAAGCCAAAACCAGTTAAAGTTGTGAAGAAAAAAG
CAGACCAGAAACCAAAAACAAAACTTAAGAACGTTGAGCAGCCTATAATT
CCAACAAGAACACAAGTGGTTCATGCAGCTCCTCCGCAAATGAACAGAAA
AACAATGGTTTTGAAATCAGAGAAGAATTTTTATAAGAAAACAACAACAA
CTATAACCAACAATAATAACATTGAGCCGACTATCACAACCAATCAGCCA
ATCAAAGTGAAGCAAAATCAACGAGCTCCTCCAAAATCGAATGTGAAAGT
CACTGAAAAGCGTAATTTTTTAAGTTTTTATTTTTCCGAATAAGATGATC
CTTCATGAAATTCAACAAATGTCACTTTTGCAAGCTATTTTTTTATATTT
TTATACAATACAAATCTATCAAATCAATGCGGTTGGAAAAATGTGTTTGT
TATTTTGCTCATAGACATCAGATACGACAGCACCTTGAAACAAACCAGTG
GCAACAAACTCATTTACGTCATGGATTACATTACTGAAGTCAAAGAAGTC
AAGCCGAGTATGTTAAGGGGTCTTATTTACATACTCCTTATTTAGGCCCG
GTGCAAGGCACGAAAAAATAGGTTTACCTCCTCAAACTAAGAATTCGCCA
GCCTAATGATCTAGAATTCATTAAAGTTTATTTTTCATACTCCAGCCTAT
CAAAAAACGCCCCCTTGTCATAGACCCACTGACAAAACTCCCCACTGGAA
CCCCTTCCCACTGGAAAAATTGTCAAAAATATTACCTCTGGTCTAAAATT
ATACTCCAACTTTCGCCCTCGCTGAAAATAATCAAATAACCAAAAAATAT
GCAAAATATTATGCTAATTTTCCCATCCCCACTGAATTATTCTTTCGAGT
CATGACTTGAAAACAAAAGAATTGAAATCTCCAGCTATAAATAATATGGG
AATATCGATCCCCATTGTGTTTACTTTCATTTCCACTGGAAGAAAAAAAA
TACCGGGTCTGTGGGAAGGGGGTGTCAAAATTGAAGCAAAACTCTTTTAT
GTTGCTATGTCAGAGCTCCTCAGATACCCGGGGAGAATTTTCTGACAAAC
AAATTATCATACGTTTGCTGTTCTATTTTTTAGAATGTTCCACAGTTCAA
GTCAAGAATATTGGGAAAGAAGCTAAAGTAGCAATGTGGAAAACCAAAGA
ATATTTAAAGATAGGTCATTCATACACTATCATGCACCACTGTCTCTCAT
GAAGATGTTCTTTCGTTGATTTATAAGACTCTGTACCAACTGTGAATAAT
CTCCAATCTTTTGGGAGGAAAATATTATAATCGTTTTGAATTTGGAAATC
TTACCGTGATATTGATTTTAAAAATTTTGTTTAAGCAATTATCTAATGTT
CACAACGTCCATATAACGTTAGATGAACGTTGCAACAACCTTGTGTAAAA
GCTGGAAAATATATTCAAAGTGTGAAAACGGTACACTCACCCTATACACA
CCCGATACATGATGCCCGATTATGCCTAGGTGCACCCCTAGTCTTAACAA
CTACTTTGCATAGGGTTTTAGATGTTACTGGGACCAATGAATTGTAAATA
TTCGATGTCTTCGCTATATAATGAATCTTTTTCAATGATATTACTTTCTT
GAGTTTAATTTTTTAAATGGAATTTTTAGATTGATTAGGACTTTTTTTGT
TCTCATGTATATTAATTTATATAGATTCTAACTGGCTGGGAGATATTGTG
CGCCTTTTCCTATATACTAACTGTGATAATCTTTGCATTATTTTTTCAAA
GTATTGATTTTGTTAACTTTTTGTTCTTAATATAAAAAGTTTCATTTTGT
GTTTCTTCTTTGCATGTGTATTTTAGATTCCGCAGTGCCTTAAATGTGTT
TGATATCTTCCCTTCGAAGCTTTGTTTTTTGTACAGGGTGTCCCTAATTA
AAGTATCGAGTTTGAACATGCGATTGAGTAGAAAAGTTTGTGTGTGTTAT
CGCTAAAATATAAGAACGTTCTCCATCACACAGGTATATTACAAAAGGTA
GTTACAACGTATAAATTAATCGTAATGACAAAGAAAAAAGAGGGAGAGCT
TAAAATACAATTTTGTGAACACGCACATAAAACTTTCTACTCATAGTTGT
GTTTCGACTCGATACTTTAATTAGGGACACCCTGCAGTTTGTTCTTCCAT
GGAGGTATAAAGAAACAGGAGAAGTATGCTATTGTAACCAAGCTCGCCCT
ACGATGGGCTACGATTAAAGAAGTTACGATGTATGCATGCCCATAATCTC
ATATATCGTGCATTTTCAATGAGCTCTTCTGCTATCCATAGGTGAAATCT
TATTGGCTCATTTAAGCTTTGGAAATTAGATGAGACGAGATTCATTGTTT
CATTTGGACTAAAAAAGGGCGTGTAAACTTGGCAATGCTTCATCAAATGA
TAAGACTTTTTTATCAATGTTTTCTTTAAGGTGAACCTTATTGCTTGATA
TATTCCTCCAAAATTCTCCAGCGACTTTATGTCTACAAATTAAGTCTGAA
ATTGTGTGTGCTTATAAAGAACCTT

Coding sequence (CDS) from alignment at sc0000611:150204..157378-

>TCONS_00027232 ID=TCONS_00027232|Name=TCONS_00027232|organism=Clytia hemisphaerica|type=CDS|length=6552bp|location=Sequence derived from alignment at sc0000611:150204..157378- (Clytia hemisphaerica)
AATGTTCCACAGTTCAAGTCAAGAATATTGGGAAAGAAGCTAAAGTAGCA
ATGTGGAAAACCAAAGAATATTTAAAGATAGGTCATTCATACACTATCAT
GCACCACTGTCTCTCATGAACATCAGATACGACAGCACCTTGAAACAAAC
CAGTGGCAACAAACTCATTTACGTCATGGATTACATTACTGAAGTCAAAG
AAGTCAAGCCGAGTACCGCAAAAAACGGTATGCAATTCGTAGTATGCCGT
TACAATCCTGCTGGTAATATGCTAAGCGAGTTTAAAAACAATGTCAAACC
ACCCGGTGCACCCGCCTCTACAGCTCCACCTCCCAAACAACAAGCCGCCG
CTGCTCCACCTAAAACTCAACCACAGCCCAAACCAATCAAATCACAACCC
ATTCAAAAATCAAAACCGAAAACTCAAATCGTGGAAAAGCCAAAACCAGT
TAAAGTTGTGAAGAAAAAAGCAGACCAGAAACCAAAAACAAAACTTAAGA
ACGTTGAGCAGCCTATAATTCCAACAAGAACACAAGTGGTTCATGCAGCT
CCTCCGCAAATGAACAGAAAAACAATGGTTTTGAAATCAGAGAAGAATTT
TTATAAGAAAACAACAACAACTATAACCAACAATAATAACATTGAGCCGA
CTATCACAACCAATCAGCCAATCAAAGTGAAGCAAAATCAACGAGCTCCT
CCAAAATCGAATGTGAAAGTCACTGAAAAGCGAAAAGAATTGACAGGCGA
AGATGCCGTCAAAATGTGGTATGACGAGATCAAAGATTTCAACTTCAAAA
ATGTCAAGTACAATTCCAAGTGTGGCCATTTCTCACAAATGGTATGGGTC
AGTACAACCGAAATAGGAGCCGGCAAAGGAAGCTTCAAGCAACAAGTACT
AGACGCGCACAATAGTTGCCGCCAAAAGCATGGAACACCACCCCTTCAAT
GGTCAGACGTCCTAGCACAACAAGCACAGAGTTGGGCGGACAAGATTGCC
AAGAAAGGCAAATTCGAGCACTCCCCAAGCAAACTGAGGAAAGGACAAGG
AGAAAATATCGCTTGTGCTGGAGATGGTTCAAACTGTCGCGGAATGTTCC
ACAGTTCAAGTCAAGAATATTGGGAAAGAAGCTAAAGTAGCAATGTGGAA
AACCAAAGAATATTTAAAGATAGGTCATTCATACACTATCATGCACCACT
GTCTCTCATGAACATCAGATACGACAGCACCTTGAAACAAACCAGTGGCA
ACAAACTCATTTACGTCATGGATTACATTACTGAAGTCAAAGAAGTCAAG
CCGAGTACCGCAAAAAACGGTATGCAATTCGTAGTATGCCGTTACAATCC
TGCTGGTAATATGCTAAGCGAGTTTAAAAACAATGTCAAACCACCCGGTG
CACCCGCCTCTACAGCTCCACCTCCCAAACAACAAGCCGCCGCTGCTCCA
CCTAAAACTCAACCACAGCCCAAACCAATCAAATCACAACCCATTCAAAA
ATCAAAACCGAAAACTCAAATCGTGGAAAAGCCAAAACCAGTTAAAGTTG
TGAAGAAAAAAGCAGACCAGAAACCAAAAACAAAACTTAAGAACGTTGAG
CAGCCTATAATTCCAACAAGAACACAAGTGGTTCATGCAGCTCCTCCGCA
AATGAACAGAAAAACAATGGTTTTGAAATCAGAGAAGAATTTTTATAAGA
AAACAACAACAACTATAACCAACAATAATAACATTGAGCCGACTATCACA
ACCAATCAGCCAATCAAAGTGAAGCAAAATCAACGAGCTCCTCCAAAATC
GAATGTGAAAGTCACTGAAAAGCGAAAAGAATTGACAGGCGAAGATGCCG
TCAAAATGTGGTATGACGAGATCAAAGATTTCAACTTCAAAAATGTCAAG
TACAATTCCAAGTGTGGCCATTTCTCACAAATGGTATGGGTCAGTACAAC
CGAAATAGGAGCCGGCAAAGGAAGCTTCAAGCAACAAGTACTAGACGCGC
ACAATAGTTGCCGCCAAAAGCATGGAACACCACCCCTTCAATGGTCAGAC
GTCCTAGCACAACAAGCACAGAGTTGGGCGGACAAGATTGCCAAGAAAGG
CAAATTCGAGCACTCCCCAAGCAAACTGAGGAAAGGACAAGGAGAAAATA
TCGCTTGTGCTGGAGATGGTTCAAACTGTCGCGGAATGTTCCACAGTTCA
AGTCAAGAATATTGGGAAAGAAGCTAAAGTAGCAATGTGGAAAACCAAAG
AATATTTAAAGATAGGTCATTCATACACTATCATGCACCACTGTCTCTCA
TGAACATCAGATACGACAGCACCTTGAAACAAACCAGTGGCAACAAACTC
ATTTACGTCATGGATTACATTACTGAAGTCAAAGAAGTCAAGCCGAGTAC
CGCAAAAAACGGTATGCAATTCGTAGTATGCCGTTACAATCCTGCTGGTA
ATATGCTAAGCGAGTTTAAAAACAATGTCAAACCACCCGGTGCACCCGCC
TCTACAGCTCCACCTCCCAAACAACAAGCCGCCGCTGCTCCACCTAAAAC
TCAACCACAGCCCAAACCAATCAAATCACAACCCATTCAAAAATCAAAAC
CGAAAACTCAAATCGTGGAAAAGCCAAAACCAGTTAAAGTTGTGAAGAAA
AAAGCAGACCAGAAACCAAAAACAAAACTTAAGAACGTTGAGCAGCCTAT
AATTCCAACAAGAACACAAGTGGTTCATGCAGCTCCTCCGCAAATGAACA
GAAAAACAATGGTTTTGAAATCAGAGAAGAATTTTTATAAGAAAACAACA
ACAACTATAACCAACAATAATAACATTGAGCCGACTATCACAACCAATCA
GCCAATCAAAGTGAAGCAAAATCAACGAGCTCCTCCAAAATCGAATGTGA
AAGTCACTGAAAAGCGAAAAGAATTGACAGGCGAAGATGCCGTCAAAATG
TGGTATGACGAGATCAAAGATTTCAACTTCAAAAATGTCAAGTACAATTC
CAAGTGTGGCCATTTCTCACAAATGGTATGGGTCAGTACAACCGAAATAG
GAGCCGGCAAAGGAAGCTTCAAGCAACAAGTACTAGACGCGCACAATAGT
TGCCGCCAAAAGCATGGAACACCACCCCTTCAATGGTCAGACGTCCTAGC
ACAACAAGCACAGAGTTGGGCGGACAAGATTGCCAAGAAAGGCAAATTCG
AGCACTCCCCAAGCAAACTGAGGAAAGGACAAGGAGAAAATATCGCTTGT
GCTGGAGATGGTTCAAACTGTCGCGGAATGTTCCACAGTTCAAGTCAAGA
ATATTGGGAAAGAAGCTAAAGTAGCAATGTGGAAAACCAAAGAATATTTA
AAGATAGGTCATTCATACACTATCATGCACCACTGTCTCTCATGAACATC
AGATACGACAGCACCTTGAAACAAACCAGTGGCAACAAACTCATTTACGT
CATGGATTACATTACTGAAGTCAAAGAAGTCAAGCCGAGTACCGCAAAAA
ACGGTATGCAATTCGTAGTATGCCGTTACAATCCTGCTGGTAATATGCTA
AGCGAGTTTAAAAACAATGTCAAACCACCCGGTGCACCCGCCTCTACAGC
TCCACCTCCCAAACAACAAGCCGCCGCTGCTCCACCTAAAACTCAACCAC
AGCCCAAACCAATCAAATCACAACCCATTCAAAAATCAAAACCGAAAACT
CAAATCGTGGAAAAGCCAAAACCAGTTAAAGTTGTGAAGAAAAAAGCAGA
CCAGAAACCAAAAACAAAACTTAAGAACGTTGAGCAGCCTATAATTCCAA
CAAGAACACAAGTGGTTCATGCAGCTCCTCCGCAAATGAACAGAAAAACA
ATGGTTTTGAAATCAGAGAAGAATTTTTATAAGAAAACAACAACAACTAT
AACCAACAATAATAACATTGAGCCGACTATCACAACCAATCAGCCAATCA
AAGTGAAGCAAAATCAACGAGCTCCTCCAAAATCGAATGTGAAAGTCACT
GAAAAGCGAAAAGAATTGACAGGCGAAGATGCCGTCAAAATGTGGTATGA
CGAGATCAAAGATTTCAACTTCAAAAATGTCAAGTACAATTCCAAGTGTG
GCCATTTCTCACAAATGGTATGGGTCAGTACAACCGAAATAGGAGCCGGC
AAAGGAAGCTTCAAGCAACAAGTACTAGACGCGCACAATAGTTGCCGCCA
AAAGCATGGAACACCACCCCTTCAATGGTCAGACGTCCTAGCACAACAAG
CACAGAGTTGGGCGGACAAGATTGCCAAGAAAGGCAAATTCGAGCACTCC
CCAAGCAAACTGAGGAAAGGACAAGGAGAAAATATCGCTTGTGCTGGAGA
TGGTTCAAACTGTCGCGGAATGTTCCACAGTTCAAGTCAAGAATATTGGG
AAAGAAGCTAAAGTAGCAATGTGGAAAACCAAAGAATATTTAAAGATAGG
TCATTCATACACTATCATGCACCACTGTCTCTCATGAACATCAGATACGA
CAGCACCTTGAAACAAACCAGTGGCAACAAACTCATTTACGTCATGGATT
ACATTACTGAAGTCAAAGAAGTCAAGCCGAGTACCGCAAAAAACGGTATG
CAATTCGTAGTATGCCGTTACAATCCTGCTGGTAATATGCTAAGCGAGTT
TAAAAACAATGTCAAACCACCCGGTGCACCCGCCTCTACAGCTCCACCTC
CCAAACAACAAGCCGCCGCTGCTCCACCTAAAACTCAACCACAGCCCAAA
CCAATCAAATCACAACCCATTCAAAAATCAAAACCGAAAACTCAAATCGT
GGAAAAGCCAAAACCAGTTAAAGTTGTGAAGAAAAAAGCAGACCAGAAAC
CAAAAACAAAACTTAAGAACGTTGAGCAGCCTATAATTCCAACAAGAACA
CAAGTGGTTCATGCAGCTCCTCCGCAAATGAACAGAAAAACAATGGTTTT
GAAATCAGAGAAGAATTTTTATAAGAAAACAACAACAACTATAACCAACA
ATAATAACATTGAGCCGACTATCACAACCAATCAGCCAATCAAAGTGAAG
CAAAATCAACGAGCTCCTCCAAAATCGAATGTGAAAGTCACTGAAAAGCG
AAAAGAATTGACAGGCGAAGATGCCGTCAAAATGTGGTATGACGAGATCA
AAGATTTCAACTTCAAAAATGTCAAGTACAATTCCAAGTGTGGCCATTTC
TCACAAATGGTATGGGTCAGTACAACCGAAATAGGAGCCGGCAAAGGAAG
CTTCAAGCAACAAGTACTAGACGCGCACAATAGTTGCCGCCAAAAGCATG
GAACACCACCCCTTCAATGGTCAGACGTCCTAGCACAACAAGCACAGAGT
TGGGCGGACAAGATTGCCAAGAAAGGCAAATTCGAGCACTCCCCAAGCAA
ACTGAGGAAAGGACAAGGAGAAAATATCGCTTGTGCTGGAGATGGTTCAA
ACTGTCGCGGAATGTTCCACAGTTCAAGTCAAGAATATTGGGAAAGAAGC
TAAAGTAGCAATGTGGAAAACCAAAGAATATTTAAAGATAGGTCATTCAT
ACACTATCATGCACCACTGTCTCTCATGAACATCAGATACGACAGCACCT
TGAAACAAACCAGTGGCAACAAACTCATTTACGTCATGGATTACATTACT
GAAGTCAAAGAAGTCAAGCCGAGTACCGCAAAAAACGGTATGCAATTCGT
AGTATGCCGTTACAATCCTGCTGGTAATATGCTAAGCGAGTTTAAAAACA
ATGTCAAACCACCCGGTGCACCCGCCTCTACAGCTCCACCTCCCAAACAA
CAAGCCGCCGCTGCTCCACCTAAAACTCAACCACAGCCCAAACCAATCAA
ATCACAACCCATTCAAAAATCAAAACCGAAAACTCAAATCGTGGAAAAGC
CAAAACCAGTTAAAGTTGTGAAGAAAAAAGCAGACCAGAAACCAAAAACA
AAACTTAAGAACGTTGAGCAGCCTATAATTCCAACAAGAACACAAGTGGT
TCATGCAGCTCCTCCGCAAATGAACAGAAAAACAATGGTTTTGAAATCAG
AGAAGAATTTTTATAAGAAAACAACAACAACTATAACCAACAATAATAAC
ATTGAGCCGACTATCACAACCAATCAGCCAATCAAAGTGAAGCAAAATCA
ACGAGCTCCTCCAAAATCGAATGTGAAAGTCACTGAAAAGCGAAAAGAAT
TGACAGGCGAAGATGCCGTCAAAATGTGGTATGACGAGATCAAAGATTTC
AACTTCAAAAATGTCAAGTACAATTCCAAGTGTGGCCATTTCTCACAAAT
GGTATGGGTCAGTACAACCGAAATAGGAGCCGGCAAAGGAAGCTTCAAGC
AACAAGTACTAGACGCGCACAATAGTTGCCGCCAAAAGCATGGAACACCA
CCCCTTCAATGGTCAGACGTCCTAGCACAACAAGCACAGAGTTGGGCGGA
CAAGATTGCCAAGAAAGGCAAATTCGAGCACTCCCCAAGCAAACTGAGGA
AAGGACAAGGAGAAAATATCGCTTGTGCTGGAGATGGTTCAAACTGTCGC
GG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015313XLOC_015313Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027232-proteinTCONS_00027232-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027232-exon-sc0000611-1575043694:157211..157378TCONS_00027232-exon-sc0000611-1575043694:157211..157378Clytia hemisphaericaexon
TCONS_00027232-exon-sc0000611-1575043694:156620..156814TCONS_00027232-exon-sc0000611-1575043694:156620..156814Clytia hemisphaericaexon
TCONS_00027232-exon-sc0000611-1575043694:153627..153773TCONS_00027232-exon-sc0000611-1575043694:153627..153773Clytia hemisphaericaexon
TCONS_00027232-exon-sc0000611-1575043694:152468..152986TCONS_00027232-exon-sc0000611-1575043694:152468..152986Clytia hemisphaericaexon
TCONS_00027232-exon-sc0000611-1575043694:152222..152314TCONS_00027232-exon-sc0000611-1575043694:152222..152314Clytia hemisphaericaexon
TCONS_00027232-exon-sc0000611-1575043694:150204..151645TCONS_00027232-exon-sc0000611-1575043694:150204..151645Clytia hemisphaericaexon
TCONS_00027232-exon-sc0000611-1510915933:157211..157378TCONS_00027232-exon-sc0000611-1510915933:157211..157378Clytia hemisphaericaexon
TCONS_00027232-exon-sc0000611-1510915933:156620..156814TCONS_00027232-exon-sc0000611-1510915933:156620..156814Clytia hemisphaericaexon
TCONS_00027232-exon-sc0000611-1510915933:153627..153773TCONS_00027232-exon-sc0000611-1510915933:153627..153773Clytia hemisphaericaexon
TCONS_00027232-exon-sc0000611-1510915933:152468..152986TCONS_00027232-exon-sc0000611-1510915933:152468..152986Clytia hemisphaericaexon
TCONS_00027232-exon-sc0000611-1510915933:152222..152314TCONS_00027232-exon-sc0000611-1510915933:152222..152314Clytia hemisphaericaexon
TCONS_00027232-exon-sc0000611-1510915933:150204..151645TCONS_00027232-exon-sc0000611-1510915933:150204..151645Clytia hemisphaericaexon
TCONS_00027232-exon-sc0000611-1491911889:157211..157378TCONS_00027232-exon-sc0000611-1491911889:157211..157378Clytia hemisphaericaexon
TCONS_00027232-exon-sc0000611-1491911889:156620..156814TCONS_00027232-exon-sc0000611-1491911889:156620..156814Clytia hemisphaericaexon
TCONS_00027232-exon-sc0000611-1491911889:153627..153773TCONS_00027232-exon-sc0000611-1491911889:153627..153773Clytia hemisphaericaexon
TCONS_00027232-exon-sc0000611-1491911889:152468..152986TCONS_00027232-exon-sc0000611-1491911889:152468..152986Clytia hemisphaericaexon
TCONS_00027232-exon-sc0000611-1491911889:152222..152314TCONS_00027232-exon-sc0000611-1491911889:152222..152314Clytia hemisphaericaexon
TCONS_00027232-exon-sc0000611-1491911889:150204..151645TCONS_00027232-exon-sc0000611-1491911889:150204..151645Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000611supercontigsc0000611:150204..157378 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.8288	13.8369	26.4143	26.1804	76.2757	60.5102	123.567	130.459	59.0688	56.1104	32.8732	42.7742	53.98	63.6205	38.9459	17.7298	6.94051	8.78282	19.2441	24.8642	1.7728	2.33608	3.55496	3.88261	0.652567	0.588664	3.21535	1.094	0.385045	0.794563
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001283Allrgn_V5/Tpx1
IPR014044CAP_domain
IPR018244Allrgn_V5/Tpx1_CS
IPR034113SCP_GAPR1-like
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region
Blast
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BLAST of TCONS_00027232 vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 4.516e-32
Identity = 63/150 (42.00%), Postives = 93/150 (62.00%), Query Frame = 3 
Query:  150 MVQTVAGSFKQQVLDAHNSCRQKHGTPPLQWSDVLAQQAQSWADKIAKKGKFEHSPSKLRKGQGENIACAGGKELTGEDAVKMWYDEIKDFNFKNVKYNSKCGHFSQMVWVSTTEIGAGKGTAKNGMQFVVCRYNPAGNMLSE--FKNNV 593
            M ++ +  F  +VL AHN  RQKHG PPL+    L ++AQ +++ +A     +HSP   R   GEN+A A   + TG++    WY EIK++NF+   + S  GHF+ MVW +T ++G GK +A +G  FVV RY PAGN+++E  F+ NV
Sbjct:    1 MGKSASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWAS-YDQTGKEVADRWYSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENV 149
The following BLAST results are available for this feature:
BLAST of TCONS_00027232 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GAPR14.516e-3242.00Golgi-associated plant pathogenesis-related protei... [more]
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