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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027251 ID=TCONS_00027251|Name=TCONS_00027251|organism=Clytia hemisphaerica|type=transcript|length=1418bp
TAAAAAGGGGTACCACATAACCTagccctgctttttagaccaaccctttT
TTTCTACAACTACAAAAGAAATACaagaaattttataagaacaatgttaA
AGGAACATGAAGCTCAATTGTAGCcgaacaaaagaagaaattaaaagtAC
CTTAAGGGGACTAAATCTGATGGGAACTTATTTTAGCGGCCAACgtaagt
ttttaattttgaaagattaatttagtttttctaagAGCAATCAAGCCTAA
ATAACATAACGAAAAGAAATCACCAAAAATTTAgtggttcttatgaaaaa
aagtaaatgtTATTCTCGACCGATGATATCAACAGAGGGAACTTGATCAG
AATTTCCACACAATTTACAATTCTCATAATAAAATTCACTTCGATCAACA
CCAGGTAtatcttgatttttcaaatccCACGCCATCTGGTAAGTAATATC
ACTTTTACTAAATCTCGaagcaaaaacttttgtttgacCAGGAGCACCAA
ATCTTGACTTAGTACAAAACCACTTATCGCAGGGATTTTTAAAAGTCTCA
GTAACTCCTGTCGGTTGTCCTTCAATAAATTTCCATCCCTCATTCTCTCC
TAACCACACTTCAACCCAGTTATGATTTCCGTTTTCGATcttactgttcc
aagccggtgtTCCAACTAAACGTGCCGGAATGCCTTAAGCCCGCATAGCA
TCAATATACAAAATGGAAATCCCAGTACAGCTTGCGTATCCAAAAAGCAT
AGTCGACATTGGATCGTAAATTAAAGGCGTTTGACTGGACTTAAAAACGA
TGCTTTCTTTCCCTTTAGGTGCTAACTCTTTCCAAGCCTGTTTATTAACA
AACAAAGCCATTATTTCATAAATGTTCGAACGGATGTACTTTCTCCTAAA
TTCAAAATACTGAGCTGCCAAAGGAGATAACTTATCCCATAAAATCTGCC
TCCAGTTAGTACGAGCTTCATTGACATTTGCGTATGGTAAAACATAGTCA
AAGTATACATCCAGAGGTACAGAGCCAGCCCAAGGATATATTTGCCGAGC
CATCAATGAGATATTAACAGTAGGTTCGACTATACCACCGTCAAATAATG
TTGCGTTGTTTGGTTTGTCGAAATCTGGCATTTGGTTTTGTAAGAATTGA
GTAGCTTCTTTCACAGCATCTGAAATAGGTTTACAATTTCCATTGTCCCA
TGGAACTGTAGTGCTTGGACATACACTCTCTACTCCAAGTAAAGATAGCG
TCgataaaatccaaatttttaaaaGCAACATTATtacgagaaaaatattt
caagtctGAAATCAGTTAAATTCTTtatacattaaaataaaaaatgcttc
tGATAGTTGTCACAGATTTTATTGTCAGTGTCTTTTATGTAACCTCCTTG
TTTATGTTGTAAaccgaa Run BLAST on NCBI protein sequence of TCONS_00027251-protein >TCONS_00027251-protein ID=TCONS_00027251-protein|Name=TCONS_00027251-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MLLLKIWILSTLSLLGVESVCPSTTVPWDNGNCKPISDAVKEATQFLQNQ
MPDFDKPNNATLFDGGIVEPTVNISLMARQIYPWAGSVPLDVYFDYVLPY
ANVNEARTNWRQILWDKLSPLAAQYFEFRRKYIRSNIYEIMALFVNKQAW
KELAPKGKESIVFKSSQTPLIYDPMSTMLFGYASCTGISILYIDAMRA Run BLAST on NCBI transcript from alignment at sc0000611:100797..102214 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027251 ID=TCONS_00027251|Name=TCONS_00027251|organism=Clytia hemisphaerica|type=transcript|length=1418bp|location=Sequence derived from alignment at sc0000611:100797..102214 (Clytia hemisphaerica)
ttcggtTTACAACATAAACAAGGAGGTTACATAAAAGACACTGACAATAA
AATCTGTGACAACTATCagaagcattttttattttaatgtataAAGAATT
TAACTGATTTCagacttgaaatatttttctcgtaATAATGTTGCttttaa
aaatttggattttatcGACGCTATCTTTACTTGGAGTAGAGAGTGTATGT
CCAAGCACTACAGTTCCATGGGACAATGGAAATTGTAAACCTATTTCAGA
TGCTGTGAAAGAAGCTACTCAATTCTTACAAAACCAAATGCCAGATTTCG
ACAAACCAAACAACGCAACATTATTTGACGGTGGTATAGTCGAACCTACT
GTTAATATCTCATTGATGGCTCGGCAAATATATCCTTGGGCTGGCTCTGT
ACCTCTGGATGTATACTTTGACTATGTTTTACCATACGCAAATGTCAATG
AAGCTCGTACTAACTGGAGGCAGATTTTATGGGATAAGTTATCTCCTTTG
GCAGCTCAGTATTTTGAATTTAGGAGAAAGTACATCCGTTCGAACATTTA
TGAAATAATGGCTTTGTTTGTTAATAAACAGGCTTGGAAAGAGTTAGCAC
CTAAAGGGAAAGAAAGCATCGTTTTTAAGTCCAGTCAAACGCCTTTAATT
TACGATCCAATGTCGACTATGCTTTTTGGATACGCAAGCTGTACTGGGAT
TTCCATTTTGTATATTGATGCTATGCGGGCTTAAGGCATTCCGGCACGTT
TAGTTGGAacaccggcttggaacagtaagATCGAAAACGGAAATCATAAC
TGGGTTGAAGTGTGGTTAGGAGAGAATGAGGGATGGAAATTTATTGAAGG
ACAACCGACAGGAGTTACTGAGACTTTTAAAAATCCCTGCGATAAGTGGT
TTTGTACTAAGTCAAGATTTGGTGCTCCTGgtcaaacaaaagtttttgct
tCGAGATTTAGTAAAAGTGATATTACTTACCAGATGGCGTGggatttgaa
aaatcaagataTACCTGGTGTTGATCGAAGTGAATTTTATTATGAGAATT
GTAAATTGTGTGGAAATTCTGATCAAGTTCCCTCTGTTGATATCATCGGT
CGAGAATAacatttactttttttcataagaaccacTAAATTTTTGGTGAT
TTCTTTTCGTTATGTTATTTAGGCTTGATTGCTcttagaaaaactaaatt
aatctttcaaaattaaaaacttacGTTGGCCGCTAAAATAAGTTCCCATC
AGATTTAGTCCCCTTAAGGTacttttaatttcttcttttgttcgGCTACA
ATTGAGCTTCATGTTCCTTtaacattgttcttataaaatttcttGTATTT
CTTTTGTAGTTGTAGAAAAaaagggttggtctaaaaagcagggctAGGTT
ATGTGGTACCCCTTTTTA Coding sequence (CDS) from alignment at sc0000611:100797..102214 >TCONS_00027251 ID=TCONS_00027251|Name=TCONS_00027251|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at sc0000611:100797..102214 (Clytia hemisphaerica)
ATGTTGCttttaaaaatttggattttatcGACGCTATCTTTACTTGGAGT
AGAGAGTGTATGTCCAAGCACTACAGTTCCATGGGACAATGGAAATTGTA
AACCTATTTCAGATGCTGTGAAAGAAGCTACTCAATTCTTACAAAACCAA
ATGCCAGATTTCGACAAACCAAACAACGCAACATTATTTGACGGTGGTAT
AGTCGAACCTACTGTTAATATCTCATTGATGGCTCGGCAAATATATCCTT
GGGCTGGCTCTGTACCTCTGGATGTATACTTTGACTATGTTTTACCATAC
GCAAATGTCAATGAAGCTCGTACTAACTGGAGGCAGATTTTATGGGATAA
GTTATCTCCTTTGGCAGCTCAGTATTTTGAATTTAGGAGAAAGTACATCC
GTTCGAACATTTATGAAATAATGGCTTTGTTTGTTAATAAACAGGCTTGG
AAAGAGTTAGCACCTAAAGGGAAAGAAAGCATCGTTTTTAAGTCCAGTCA
AACGCCTTTAATTTACGATCCAATGTCGACTATGCTTTTTGGATACGCAA
GCTGTACTGGGATTTCCATTTTGTATATTGATGCTATGCGGGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027251-exon-sc0000611-1491911889:100797..102214 | TCONS_00027251-exon-sc0000611-1491911889:100797..102214 | Clytia hemisphaerica | exon |
| TCONS_00027251-exon-sc0000611-1510915933:100797..102214 | TCONS_00027251-exon-sc0000611-1510915933:100797..102214 | Clytia hemisphaerica | exon |
| TCONS_00027251-exon-sc0000611-1575043694:100797..102214 | TCONS_00027251-exon-sc0000611-1575043694:100797..102214 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000611 | supercontig | sc0000611:100797..102214 . |
Blast
The following BLAST results are available for this feature:
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