TCONS_00027181 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027181
Unique NameTCONS_00027181
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027181 ID=TCONS_00027181|Name=TCONS_00027181|organism=Clytia hemisphaerica|type=transcript|length=2495bp
tcttgctccacatccgtgtcaattcaatatccaAAAAGCTTGTacattaa
aattgatgagtaagcaaacgatatcactcttattataaaaacaaaacctt
taactgaTACTAGGGAAAGGGGAAATAGATAtcattcaaattattttcaa
aaattttcctgtttCGTTTGCAGAAATATTTATCAAGTTGCCTGGAACTA
AGATTAATAATGAAGTTCTcaagtcaaattattttttattcctAGCAAca
attttgttccttttttcaTCTCCTGGATGAAGTGTAATTTATTTTGACCT
ACAATCTTAATATGGTGAACTTTGTTACTCGAGCGTAGAGGTTTTTATGA
TGATACTTTTTGTACTTTGGCCGAGAGGTACGGACAAAACGCAGCAATTT
ATGAGCTGTGATGGAGAGCAGAATAGTTTATGGTGATTTTGGAACTCCAC
CGTTGAGTATCTTAAATATTGAGATAAAGAGAACGAAGAGCGAACGGATT
TCATTCGTTAAAGACATCTGCAGTAGGTGCATCGTAATAAAATTTTGACG
GTAAGTTGTCGATTTCATtttatatacagttgacgctctctaattcgatt
ttcaaggggaattggattttcatcgaataagggagcttatcgaataaggg
agcctatcgaatagtagaacgtcaaattagagagtgtcaactagATTTCG
CCTGGACTTTTTTCCCGCCtaccaaaaatctaaaattttggataaaatag
acaaaatttcgtaaatctatttttcttttattctatTAGGGGTTTTGGCA
ACATCtcgattttaagttttttgcaaACACTCTCATACCCAcgaaaatcg
caaaattcaCTAAAATTGTTGAAATTAAGCCATGCGAAACTTCAATTTTA
GACCAGCAGAAAGTCGTTATCAAACCGTGGTGGTCCTGATCACCGATGAT
TTCTTTCGACCATGAAATTacgaatattcatgatattcatgatgtaatct
tttatacggaagcacacaaaataatccggaactagtggcaaaatttgcca
ctagtcttttgttattttgccactagttccgggttatctcgggtgcttcc
gtataaaagattacgtcatgaatatcatgaatcccAATTTCTAGATTTTC
CTTAAATCAgtgacaaaatcaaaaatcagtCTATATATTTTTTACATAAG
TATTTCCAAACCCGAAAGAAATCCTCCTTTTTTCTTTGGCTTAATGAAAT
TTTTATGGTATAACCAACCATTTGCTTTATCAAAGAATTCTTCAAAgtaa
attcatgaaaattttcTGACAGTTTTCTTTTCGTTTCTTTTTCTAGGTGG
AAAACTTCTATAGTAGCTTCATTATGCATTGGCAAATTTTGGCTACCATT
TTGTTTGTGGTCACTATTAGTAACCATGTTTATGGGAAAGCCGCAATGGA
TGATGGTCCTGTTTTCTCCGAAGCAGAAGATGAAATGGTCATTAAACTGT
TGGACGAATTCCGTGCACCTTCACAATCAGCTGATGAATTAAACGATGAA
CCCAGTGGACCTTCTTTCGACGAATCTTTTCGACGTTCATTTTCGAGTCA
CAAAGATTTTTTACGAGCATTAAAAGATGATATCGAGAGACATGAGCGTA
AACGTGGTGTTCTTAGTTGTGCGAAAGTTGACCAACCTTCAAatTGTCCG
GGAAGAAAAGAAGTCAACGGCTGTGGAACAGACatgttttcgaaaattcc
tttccCCTTCCGAGATACGATGACTGCTTCATGCAATAAACACGATATTT
GTTATGGATGTGGTTATTCACGAAAATGGACACAATCAGATTGCGATAGC
CAGTTTAAAGATGACATGTACAAAAAATGTGATTGCAAATACAAGGATGA
TTGGTGGTGGACAAGAACACCATCAGTTTTAGCCTGTAAGACTACTGCTT
TCTCCATGTATCAGGCTGTTACCTGGTTTGGTTCAGGAGCTATCTCCAAA
CAAGATGAACATTACTGCCACGATAGCTGTATCTTACCTTATGGTAGCCC
AACTATCGCCCTTTATCCTTAGATTAATAACtatctaattttgattttta
atggtgattcatgatatgcaacactggagagtcttctgagaattttcaaa
aagttccacccaatacgtcactttttctattgtttaaatgacgtattggg
ttgaactttttgaaaattcttggaagactctccagtgttgcatatcatga
atacacctTTAAAACGTTAGGGAGACTGGGTTTGAAACTACCCTGAAAGA
ATGACGTCAGAATGTATGAAGTCGTTGCAGCTTTGACTTTCTCATAGACA
AAGCATTTTGGCGTCATTTTCTTATAGATTCATCACTAGTCTCCTGAAAA
GCCGTTTTAAAGGTTAATAAGTGCATTTAAGCAAATTTTACCTACATGAA
ATGCAATTATATGTTTAATTAAAAGAGAATACTATAAAATATTTC
Run BLAST on NCBI

transcript from alignment at sc0000608:145667..152054-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027181 ID=TCONS_00027181|Name=TCONS_00027181|organism=Clytia hemisphaerica|type=transcript|length=6388bp|location=Sequence derived from alignment at sc0000608:145667..152054- (Clytia hemisphaerica)
TCTTGCTCCACATCCGTGTCAATTCAATATCCAAAAAGCTTGTACATTAA
AATTGATGAGTAAGCAAACGATATCACTCTTATTATAAAAACAAAACCTT
TAACTGATACTAGGGAAAGGGGAAATAGATATCATTCAAATTATTTTCAA
AAATTTTCCTGTTTCGTTTGCAGAAATATTTATCAAGTTGCCTGGAACTA
AGATTAATAATGAAGTTCTCAAGTCAAATTATTTTTTATTCCTAGCAACA
ATTTTGTTCCTTTTTTCATCTCCTGGATGAAGTGTAATTTATTTTGACCT
ACAATCTTAATATGGTGAACTTTGTTACTCGAGCGTAGAGGTTTTTATGA
TGATACTTTTTGTACTTTGGCCGAGAGGTACGGACAAAACGCAGCAATTT
ATGAGCTGTGATGGAGAGCAGAATAGTTTATGGTGATTTTGGAACTCCAC
CGTTGAGTATCTTAAATATTGAGATAAAGAGAACGAAGAGCGAACGGATT
TCATTCGTTAAAGACATCTGCAGTAGGTGCATCGTAATAAAATTTTGACG
GTAAGTTGTCGATTTCATTTTATATACAGTTGACGCTCTCTAATTCGATT
TTCAAGGGGAATTGGATTTTCATCGAATAAGGGAGCTTATCGAATAAGGG
AGCCTATCGAATAGTAGAACGTCAAATTAGAGAGTGTCAACTAGATTTCG
CCTGGACTTTTTTCCCGCCTACCAAAAATCTAAAATTTTGGATAAAATAG
ACAAAATTTCGTAAATCTATTTTTCTTTTATTCTATTAGGGGTTTTGGCA
ACATCTCGATTTTAAGTTTTTTGCAAACACTCTCATACCCACGAAAATCG
CAAAATTCACTAAAATTGTTGAAATTAAGCCATGCGAAACTTCAATTTTA
GACCAGCAGAAAGTCGTTATCAAACCGTGGTGGTCCTGATCACCGATGAT
TTCTTTCGACCATGAAATTACGAATATTCATGATATTCATGATGTAATCT
TTTATACGGAAGCACACAAAATAATCCGGAACTAGTGGCAAAATTTGCCA
CTAGTCTTTTGTTATTTTGCCACTAGTTCCGGGTTATCTCGGGTGCTTCC
GTATAAAAGATTACGTCATGAATATCATGAATCCCAATTTCTAGATTTTC
CTTAAATCAGTGACAAAATCAAAAATCAGTCTATATATTTTTTACATAAG
TATTTCCAAACCCGAAAGAAATCCTCCTTTTTTCTTTGGCTTAATGAAAT
TTTTATGGTATAACCAACCATTTGCTTTATCAAAGAATTCTTCAAAGTAA
ATTCATGAAAATTTTCTGACAGTTTTCTTTTCGTTTCTTTTTCTAGGTGG
AAAACTTCTATAGTAGCTTCATTATGGTAAGTTTACTTCTCTACATACTG
TTACATACATGCTTGAGCTTTCTAGTAATAAAATCCGGGGGGGGCACTCG
ATTCAAAAACGACCATACCAGCAGCCCTAAATTAGGCATTGGAAATCGGA
CCCTTACAGTGCAAAGAAGATTTTGCAAAATTTGAGCAAACTTTAGCTTT
AACTTTAAATCGACCCTTGCGGTGCATTTTCTTGAAAATATCTGACAATT
TTCTGGCAAAATATGGTCAGATTTTCAAAATTAGATTGCGATTTTTTTCA
TCTTTGCTTATTTCGACCCTTACAGTACACTTTGGGAAGATATATGGGAA
GAAATATACTCTTAAGGGCTGCACGTATGATAGGTCATTTACCTTGAGTG
CCCCCCCCGGGAATAAAATCCCTTTCAGCTAAAAAATTTTGGATGTTCTT
ATAAAAAAGCGTGTAAAATAAAGAAAGTAAGAATATTTTAATGGCATTTT
TAGACTTAAGACTCAAAAAGTTAAGAACATCTGAAGGCTTCAAAAAATGT
AATGGCACTGGTTCGTTGTTCGTCCCATTGATTTCAATTTAGCTAGATTT
TAACCTCATGGATGGAAAATGAAGCAATTTATTTCCCATCCAAAACGTGT
CACCCACGTGGTTTTTGCACAAACGCTAGATTGAAAGTAAAACCTATCTT
CAGATTTCAGTTTTCACTCTTTCTTGCTGGAGAAAGGTCGAAGATTCCTC
TCTAGCCCCTATGGGCTTTAAATTCAATGGTTTGCCCGTCCAGACACGGA
AAATTTCACTTTCACTCACTAAGTGCCTACCAAATATATCCATCTCGACT
AAATAAACATAAATATTTAAACAAACAATGAAAAGAACAAAATCCTTAAT
TAGGCATTTTGTTGATTTTTGACAACGTGGTGTTATATCCATCTTTAAAA
ATACCAAAAAATTTTCATTGAGAGATTTTCTTACAAACCATACTGAGAAA
AGTTGTTAATTAGCAAAAGTATTACTCCTGAAACAGGAAAAGTGAAATGT
TCATTATCCGTCTGCTAATTAGGCGTTTTGTATACAATGAGTACCGCGAA
ATTTCAATTCATCAATTCCATATACAAAAAATAATTCAGCCTTGTTTCCT
AAAAATTTCAAAAGAGAGAAAATTTCAAATTTTTATTTTCAATTGAAATT
TTTTTTTCTAAAAATAATTTGAGTGCCATCATGAAAGAAATTTGATAAAA
GAAAAAATGACAGAAAATCAAAATGGCAATTTTGAAAATAATCAAGATTA
ATTTTTCTAATTCATTATAGCATTGGCAAATTTTGGCTACCATTTTGTTT
GTGGTCACTATTAGTAACCATGTTTATGGGAAAGCCGCAATGGATGATGG
TCCTGTTTTCTCCGAAGCAGAAGATGAAATGTGAGTCATTGTTTTTCAAT
ACGAGGGGATTATTTTCGCTAACCTTTATGAACCCTGGGTTGAAACGTTT
TCTAACCGAAAATTTCATTGAATTAAATATTGACCCATATAGAATAGTGG
CACCGTTAGGCTAACATTTTTTTTAAACTTCAGTCAATGATGACGGACTT
AAAATCTAACTTAAATCCATGGATTAAAAAGATTAGTTATTTTCTTCGAG
TCTTACTGGATACCGGTCGGTTGATGTTAAAAGCAATGGCCGTGAGAGTG
CCTCTGCTCATGGACATGTTTTAAGCATACTGACAAATCAAATAAAGTTA
AAGTATCATTCTAAGAGCGATCATTTTTACGAAACTCTGTTTTCAATCAA
CATACATTATTTACCTAACAATTGTTTGGCAACCTTGCACTCAGTGCAAT
TTTCACCACATTTTGAAAACTGTTCCTTGTACCACTTTTCCGGGAACTTT
ATTCCGAAATGCCAAAGCTTTCGCTATAGCTAGCTCAGAATTCTGAACAC
TACAAGAATTATATAAATAGGAATTAAGGGACCAGGCCACAAATTATACC
TTTTGTTTTATTCACTTTATGACAGGGTCATTAAACTGTTGGACGAATTC
CGTGCACCTTCACAATCAGCTGATGAATTAAACGATGAACCCAGTGGACC
TTCTTTCGACGAATCTTTTCGACGTTCATTTTCGAGTCACAAAGATTTTT
TACGAGCATTAAAAGATGATATCGAGAGACATGAGCGTAAACGTGGTGTT
CTTAGTTGTGCGAAAGTTGACCAACCTTCAAGTATGTTCATGTTCTGTTC
TCAGAGGTCTTAGTGCACCGAAAATGATTATGATAGGTTGAAGTGCTCTT
CTTTCAGATGTCTTTTTAAAGGGTCTAGCAAGTTGTATAACTGTCTCTAT
TGCGTTGAAAGGATATTCAGAGTAGCTATAATGCACATTTATTCTGTAAG
AATATACTCTATGAAAATTCATGATGAAATTGGGCGAAGAAATAAAAAAT
TAAAAAAGAGTATCACCATAGATTTGGCAACTGACCCTATGAGAATGTAA
TCGAAAAATCAATCGACCTGAGCATCCCGATTTCTACTTTTTCATTTTCC
AGATTGTCCGGGAAGAAAAGAAGTCAACGGCTGTGGAACAGACATGTTTT
CGAAAATTCCTTTCCCCTTCCGAGATACGATGACTGCTTCATGCAATAAA
CACGATATTTGTTATGGATGTGTAAGTTTACCTCCCATTTGCACGTTTAT
CAGTATTAACCTGTTTCTTTTAGTCAATTTCATTTTATTCGTGCACTTGA
ATATTTGCTACTACCACCAAGATCTTCACTAGGGGCCGTTTCACCCAGGC
TCGCGCCGAAGTTATCTAGTTATCTGTTATGTGGAGATTACCCTTCAAGA
AAAAAGTTGAAAAAATTGATTTTCGTCATCATCCAATGGACTTTGGGATT
CAAGAATTATTTCCAATTGTTGTTAGCTTTGTAAAACATACTAAAAGAGG
ATACACGTTTTTTTTTATAAAAACATCCAAAATTGTTGAAGCCTTCGGAT
GTTCTTAACTTTTTGGGTTTCAAGGCTAAAAATATTCTTAAACATGTTCT
TATTTTCACCATTTTTGAGTATTTTTGTGCAATTTCCTAAGAAATTGGGT
GTTTTAAAGTCTGCAAAGCCTTAAGATGTTCTTAACTTGTTCTTAACATT
CTGGCCATCGAGGCTTTATGTTCTTATATAGTTTGTTCTTATTAAAAACG
TGTATATGAATCTTAGAAAAAATAGTACGCTTAGATTCTACTTTTGTCTC
ACACATGTTTTGCTCCTGACTATATTCAGGGTTATTCACGAAAATGGACA
CAATCAGATTGCGATAGCCAGTTTAAAGATGACATGTACAAAAAATGTGA
TTGCAAGTGAGTTCATTTCATTTCTTCTCCTAAAAATTAACCACAAAATT
GTAAAGTTTCTTCCATCCCAGACTGATTTCCGTCACAAAGTTTATGAAAA
ATCTGTGACACTTGAAGAGACTTTTAAAATGCCTATTTTTCCCTAAGTAT
GTTTCCTTTTTTTTCCTTTTGCAACCGAGTGTCTTTTCCGTCCTTCTAAT
AATCGTACTCTCAAATCCTAAATATTTGATTAACAGAAGTATATTACCAA
GAAACTTGTAGAGGGTTTTTATTTTCTCCTCATAGAGTGCTCGATAAGTT
AATACAGCGTTACCAATTATCAGTGAATTATTTTTTCTTTTCACTGACGA
TTGGTGCCTGAGCACCATGAATGAAACTCTGAGTTTGAAACATAGATATT
GTGTCAACTCTTTATTATATTATATTAATAAGAAGCATCCCTTTCCTCTG
TCAATAGAATTGGGCTTTTCCAGAAAAAATTTGAATATGGGATGGATGGA
GGATATATCATATTTTGGAAATTTACCTCCGGATATTGTGAATTTTGACC
CCCCCCCAGACAACGGATCTCACCTCCCGGACAAGCATCAGTTGACCCTA
CGGACATATTCAAAATCACCCCTAATCAGAAATCAAACTTTCCAGTTTTT
TCCCCCCCCCCCCCCCGGACAACGGATCTCACCTCCCGGACAAGCATCAG
TTGACCCTACGGACATATTCAAAACCCCCCCTAAACAGAAAACAAACTTT
CCCGTTTTTTCCCCCCCCCCCCCCCGGACAACGGATCTCACCTCCCGGAC
AAGCATCAGTTGACCCTACGGACATATTCAAAACCCCCCCTAAACAGAAA
ACAAACTTTCCCGTTTTTTCCCCCCCCCCCCCCCGGACAACGGATCTCAC
CTCCCGGACAAGCATCAGTTGACCCTACGGACATATTCAAAACCCCCCCT
AAACAGAAAACAAACTTTCCCGTTTTTTCCCCCCCCCCCCCCCGGACATG
TTTAATGGACTATACGATTTTAAGAAAAAACAACGTTTTTAATGGACTAA
TAATAACTCACTATCTCCATTGTTGCCATAGATACAAGGATGATTGGTGG
TGGACAAGAACACCATCAGTTTTAGCCTGTAAGACTACTGCTTTCTCCAT
GTATCAGGCTGTTACCTGGTTTGGTTCAGGAGCTATCTCCAAACAAGATG
AACATTACTGCCACGATAGCTGTATCTTACCTTATGGTAGCCCAACTATC
GCCCTTTATCCTTAGATTAATAACTATCTAATTTTGATTTTTAATGGTGA
TTCATGATATGCAACACTGGAGAGTCTTCTGAGAATTTTCAAAAAGTTCC
ACCCAATACGTCACTTTTTCTATTGTTTAAATGACGTATTGGGTTGAACT
TTTTGAAAATTCTTGGAAGACTCTCCAGTGTTGCATATCATGAATACACC
TTTAAAACGTTAGGGAGACTGGGTTTGAAACTACCCTGAAAGAATGACGT
CAGAATGTATGAAGTCGTTGCAGCTTTGACTTTCTCATAGACAAAGCATT
TTGGCGTCATTTTCTTATAGATTCATCACTAGTCTCCTGAAAAGCCGTTT
TAAAGGTTAATAAGTGCATTTAAGCAAATTTTACCTACATGAAATGCAAT
TATATGTTTAATTAAAAGAGAATACTATAAAATATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015280XLOC_015280Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027181-exon-sc0000608-1575043694:150679..152054TCONS_00027181-exon-sc0000608-1575043694:150679..152054Clytia hemisphaericaexon
TCONS_00027181-exon-sc0000608-1575043694:149275..149384TCONS_00027181-exon-sc0000608-1575043694:149275..149384Clytia hemisphaericaexon
TCONS_00027181-exon-sc0000608-1575043694:148474..148679TCONS_00027181-exon-sc0000608-1575043694:148474..148679Clytia hemisphaericaexon
TCONS_00027181-exon-sc0000608-1575043694:148034..148152TCONS_00027181-exon-sc0000608-1575043694:148034..148152Clytia hemisphaericaexon
TCONS_00027181-exon-sc0000608-1575043694:147349..147425TCONS_00027181-exon-sc0000608-1575043694:147349..147425Clytia hemisphaericaexon
TCONS_00027181-exon-sc0000608-1575043694:145667..146273TCONS_00027181-exon-sc0000608-1575043694:145667..146273Clytia hemisphaericaexon
TCONS_00027181-exon-sc0000608-1510915933:150679..152054TCONS_00027181-exon-sc0000608-1510915933:150679..152054Clytia hemisphaericaexon
TCONS_00027181-exon-sc0000608-1510915933:149275..149384TCONS_00027181-exon-sc0000608-1510915933:149275..149384Clytia hemisphaericaexon
TCONS_00027181-exon-sc0000608-1510915933:148474..148679TCONS_00027181-exon-sc0000608-1510915933:148474..148679Clytia hemisphaericaexon
TCONS_00027181-exon-sc0000608-1510915933:148034..148152TCONS_00027181-exon-sc0000608-1510915933:148034..148152Clytia hemisphaericaexon
TCONS_00027181-exon-sc0000608-1510915933:147349..147425TCONS_00027181-exon-sc0000608-1510915933:147349..147425Clytia hemisphaericaexon
TCONS_00027181-exon-sc0000608-1510915933:145667..146273TCONS_00027181-exon-sc0000608-1510915933:145667..146273Clytia hemisphaericaexon
TCONS_00027181-exon-sc0000608-1491911889:150679..152054TCONS_00027181-exon-sc0000608-1491911889:150679..152054Clytia hemisphaericaexon
TCONS_00027181-exon-sc0000608-1491911889:149275..149384TCONS_00027181-exon-sc0000608-1491911889:149275..149384Clytia hemisphaericaexon
TCONS_00027181-exon-sc0000608-1491911889:148474..148679TCONS_00027181-exon-sc0000608-1491911889:148474..148679Clytia hemisphaericaexon
TCONS_00027181-exon-sc0000608-1491911889:148034..148152TCONS_00027181-exon-sc0000608-1491911889:148034..148152Clytia hemisphaericaexon
TCONS_00027181-exon-sc0000608-1491911889:147349..147425TCONS_00027181-exon-sc0000608-1491911889:147349..147425Clytia hemisphaericaexon
TCONS_00027181-exon-sc0000608-1491911889:145667..146273TCONS_00027181-exon-sc0000608-1491911889:145667..146273Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000608supercontigsc0000608:145667..152054 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.828738	0.66047	0.751712	1.02749	1.42043	1.14821	1.08195	1.97298	1.31058	1.46593	0.601444	1.29766	0.874499	1.33831	0.491596	0.555977	0.91051	0.569039	0.612781	0.954572	0.83066	0.87333	0.653425	0.488401	0.688153	1.31067	1.02	0.886672	0.977477	0.585893
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027181 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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