TCONS_00027176 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027176
Unique NameTCONS_00027176
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027176 ID=TCONS_00027176|Name=TCONS_00027176|organism=Clytia hemisphaerica|type=transcript|length=292bp
TGACAAGATctttgcattttcctccgtCCTTGCAGCTATTTCTCTTGCAA
TCATTGATGTTGGTTTGACAGAATTTTCCAGTGAATCCTTTCTTGCATTG
ACATTTGAAACCATTGACAAGATctttgcattttcctccgttcTTGCAGC
TATTTCTCTTGCAATCATTGATGTTGGTTTGACAGAATTTTCCAGTGAAT
CCTTTCTTGCATTCACATTTAAATGAGGTATAAAGGCTTTTACATTTGCC
TTTGTTCTTGCAGGTCACACCTTTACAAAAGTTTGGGCGTGG
Run BLAST on NCBI

transcript from alignment at sc0000608:127155..127674-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027176 ID=TCONS_00027176|Name=TCONS_00027176|organism=Clytia hemisphaerica|type=transcript|length=520bp|location=Sequence derived from alignment at sc0000608:127155..127674- (Clytia hemisphaerica)
TGACAAGATCTTTGCATTTTCCTCCGTCCTTGCAGCTATTTCTCTTGCAA
TCATTGATGTTGGTTTGACAGAATTTTCCAGTGAATCCTTTCTTGCATTG
ACATTTGAAACCATTGACGAGATCTTTGCATTTTCCTCCGTTCTTGCAGC
TATTTCTCTTGCAATCATTGATGTTGGTTTGACAGAATTTTCCAGTGAAT
CCTTTCTTGCATTGGCATTTGAAACCATTGATAAGGTCTTTGCATTTTCC
TCCGTTCTTGCAGCTATTTCTCTTGCAATCATTGATGTTGGTTTGACAGA
ATTTTCCTGTGAATCCTTTCTTGCATTGACATTTGAAACCATTGACAAGA
TCTTTGCATTTTCCTCCGTTCTTGCAGCTATTTCTCTTGCAATCATTGAT
GTTGGTTTGACAGAATTTTCCAGTGAATCCTTTCTTGCATTCACATTTAA
ATGAGGTATAAAGGCTTTTACATTTGCCTTTGTTCTTGCAGGTCACACCT
TTACAAAAGTTTGGGCGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015279XLOC_015279Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027176-exon-sc0000608-1575043694:127573..127674TCONS_00027176-exon-sc0000608-1575043694:127573..127674Clytia hemisphaericaexon
TCONS_00027176-exon-sc0000608-1575043694:127155..127344TCONS_00027176-exon-sc0000608-1575043694:127155..127344Clytia hemisphaericaexon
TCONS_00027176-exon-sc0000608-1510915933:127573..127674TCONS_00027176-exon-sc0000608-1510915933:127573..127674Clytia hemisphaericaexon
TCONS_00027176-exon-sc0000608-1510915933:127155..127344TCONS_00027176-exon-sc0000608-1510915933:127155..127344Clytia hemisphaericaexon
TCONS_00027176-exon-sc0000608-1491911889:127573..127674TCONS_00027176-exon-sc0000608-1491911889:127573..127674Clytia hemisphaericaexon
TCONS_00027176-exon-sc0000608-1491911889:127155..127344TCONS_00027176-exon-sc0000608-1491911889:127155..127344Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000608supercontigsc0000608:127155..127674 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.471936	3.25867	0.106191	2.96644	3.57857	2.03529	2.14706	1.56521	1.44338	0.203776	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00027176 vs. Swiss-Prot (Human)
Match: JAG1 (Protein jagged-1 OS=Homo sapiens GN=JAG1 PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 1.668e-25
Identity = 49/89 (55.06%), Postives = 60/89 (67.42%), Query Frame = -1 
Query:    2 TCKNKGKCKSLYTS-FKCECKKGFTGKFCQTNINDCKRNSCKNGGKCKDLVNGFKCQCKKGFTGKFCQTNINDCKRNSCKDGGKCKDLV 265
             C   GKCKS     F C+C KGFTG +C  NINDC+ N C+NGG C D VN +KC C  G+ G +C+TNINDC +N C +GG C+DLV
Sbjct:  598 VCGPHGKCKSQSGGKFTCDCNKGFTGTYCHENINDCESNPCRNGGTCIDGVNSYKCICSDGWEGAYCETNINDCSQNPCHNGGTCRDLV 686

HSP 2 Score: 93.9745 bits (232), Expect = 5.350e-23
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = -1 
Query:    2 NFCKGVTCKNKGKCKSLYTSFKCECKKGFTGKFCQTNINDCKRNSCKNGGKCKDLVNGFKCQCKKGFTGKFCQTNINDCKRNSCKDGGKCKDLV 283
            + C    C N+G CK     F+CEC  G+TG  C TNI+DC  N+C +GG C+DLVNGFKC C   +TGK CQ + N+C+   C +   CK+L+
Sbjct:  338 HACLSDPCHNRGSCKETSLGFECECSPGWTGPTCSTNIDDCSPNNCSHGGTCQDLVNGFKCVCPPQWTGKTCQLDANECEAKPCVNAKSCKNLI 431

HSP 3 Score: 89.7373 bits (221), Expect = 1.585e-21
Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = -1 
Query:    8 NFCKGVTCKNKGKCKSLYTSFKCECKKGFTGKFCQTNINDCKRNSCKNGGKCKDLVNGFKCQCKKGFTGKFCQTNINDCKRNSCKDGGKCKD 283
            N C+   C+N G C     S+KC C  G+ G +C+TNINDC +N C NGG C+DLVN F C CK G+ GK C +  + C   +C +GG C D
Sbjct:  631 NDCESNPCRNGGTCIDGVNSYKCICSDGWEGAYCETNINDCSQNPCHNGGTCRDLVNDFYCDCKNGWKGKTCHSRDSQCDEATCNNGGTCYD 722

HSP 4 Score: 83.1889 bits (204), Expect = 3.231e-19
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = -1 
Query:    2 NFCKGVTCKNKGKCKSLYTSFKCECKKGFTGKFCQTNINDCKRNSCKNGGKCKDLVNGFKCQCKKGFTGKFCQTNINDCKRNSCKDGGKCKDLV 283
            N C+   C N   CK+L  S+ C+C  G+ G+ C  NINDC    C+N   C+DLVNG++C C  G+ G  C+ +I++C  N C +GG C++ +
Sbjct:  414 NECEAKPCVNAKSCKNLIASYYCDCLPGWMGQNCDININDC-LGQCQNDASCRDLVNGYRCICPPGYAGDHCERDIDECASNPCLNGGHCQNEI 506

HSP 5 Score: 80.1073 bits (196), Expect = 4.068e-18
Identity = 32/83 (38.55%), Postives = 52/83 (62.65%), Query Frame = -1 
Query:   14 CKNKGKCKSLYTSFKCECKKGFTGKFCQTNINDCKRNSCKNGGKCKDLVNGFKCQCKKGFTGKFCQTNINDCKRNSCKDGGKC 262
            C+N   C+ L   ++C C  G+ G  C+ +I++C  N C NGG C++ +N F+C C  GF+G  CQ +I+ C+ N C++G +C
Sbjct:  458 CQNDASCRDLVNGYRCICPPGYAGDHCERDIDECASNPCLNGGHCQNEINRFQCLCPTGFSGNLCQLDIDYCEPNPCQNGAQC 540

HSP 6 Score: 75.8702 bits (185), Expect = 9.653e-17
Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = -1 
Query:    2 GVTCKNKGKCKSLYTSFKCECKKGFTGKFCQTNINDCKRNSCKNGGKCKDLVNGFKCQCKKGFTGKFCQTNINDCKRNSCKDGGKCKDLV 271
            G TC N G  K     ++C C +G++G  C+   + C  + C N G CK+   GF+C+C  G+TG  C TNI+DC  N+C  GG C+DLV
Sbjct:  309 GGTCSNTGPDK-----YQCSCPEGYSGPNCEIAEHACLSDPCHNRGSCKETSLGFECECSPGWTGPTCSTNIDDCSPNNCSHGGTCQDLV 393

HSP 7 Score: 74.7146 bits (182), Expect = 2.574e-16
Identity = 38/96 (39.58%), Postives = 50/96 (52.08%), Query Frame = -1 
Query:    2 RPNFCKGVTCKNKGKCKSLYTSFKCECKKGFTGKFCQTNINDCKRNSCKNGGKCKDLVNGFKCQCKKGFTGKFCQTNINDCKRNSCKDGGKCKDLV 289
            R + C    C N G C     SF C CK+G+ G  C  N NDC  + C N G C D  N ++C+C  GF G  C+ NIN+C+ + C  G  C D +
Sbjct:  744 RNSSCLPNPCHNGGTCVVNGESFTCVCKEGWEGPICAQNTNDCSPHPCYNSGTCVDGDNWYRCECAPGFAGPDCRININECQSSPCAFGATCVDEI 839
The following BLAST results are available for this feature:
BLAST of TCONS_00027176 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
JAG11.668e-2555.06Protein jagged-1 OS=Homo sapiens GN=JAG1 PE=1 SV=3[more]
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