TCONS_00028557-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028557-protein
Unique NameTCONS_00028557-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length660

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028557-protein ID=TCONS_00028557-protein|Name=TCONS_00028557-protein|organism=Clytia hemisphaerica|type=polypeptide|length=660bp
MSTASSELVTVPKFESKPTNNDENDVQKDTMELKKELIHNKEPENGVVDQ
LKSVNGVTEDEKMEIEQNGDPVPKQNGFTEPSEDEEENKLLIDTESTDST
SITNEDELLNTDEESEKVLENGINYSEPDKNDDVVKSEDNKQKENNSTNQ
EDIKTESEIKNDTTDDIKDVKMEDVSNETSTNKNSESKFEIDNDIKNELI
VPEDSCTENEEESKKQRIELQMKRVEILKEDLLREEATLSLFRKLFDSQR
GKNGFKSKPVTAPQTIHPKPTPQPTPKQTASAKTASIPQNKSQQGSTQPA
QKFYIQVGNQLVPAPPPSSTTSYQHNGTAPSSNTPSIRETQPSKPAPPPQ
PPAPPKQTPEQKKNAAKAALRRQLEQTLLQIPPPRPPPADWNAIPNVNSI
DFMMLVGLDEVVDTILSFDNKPTLKNALEELRPFNPRICAQCKVDFSPCW
KAAKGSNIDEYVLCENCSLQNVKKELKAEHTSRLKSAFMKALKQEQEIEE
KIKAGEEVDIPNVPGADKHESRSHSPKVSQNNRISSPKLSSQSRSSGNHA
PSPPERTTERHHQSNGSHHSHGRHQVVQHYPHHSLVQQLHHQHIQQQQVE
LEPTSRHSSSRWHPYTTSSSSSHHREHHPHHRSYVQGSSSEGSPRQEYYV
VHHPHHYVAR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016190XLOC_016190Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028557TCONS_00028557Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013088Znf_NHR/GATA
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 215..235
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 502..575
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..369
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 587..643
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..215
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 431..601
e-value: 3.8E-4
score: 19.7

Blast
[Close]
BLAST of TCONS_00028557-protein vs. Swiss-Prot (Human)
Match: P66A (Transcriptional repressor p66-alpha OS=Homo sapiens GN=GATAD2A PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.488e-30
Identity = 69/146 (47.26%), Postives = 97/146 (66.44%), Query Frame = 0 
Query:  357 QTPEQKKNAAKAALRRQLEQTLLQIPPPRPPPADWNAIPNVNSIDFMMLVGLDEVVDTILSFDNKPTLKNALEELRPFNPRICAQCKVDFSPCWKAAKGSNIDEYVLCENCSLQNVKKELKAEHTSRLKSAFMKALKQEQEIEEKI 502
            ++P  ++ AAK ALR+QLE+TLL+IPPP+PP  + N +P+  + +F+ LVGL+EVV  +L    + +    L       P +CAQCK DF+  W+  K   I    +CENC   N KK LK EHTSRLK+AF+KAL+QEQEIE+++
Sbjct:  339 ESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQGRMSAATVLSR----EPYMCAQCKTDFTCRWREEKSGAI----MCENCMTTNQKKALKVEHTSRLKAAFVKALQQEQEIEQRL 476
The following BLAST results are available for this feature:
BLAST of TCONS_00028557-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P66A5.488e-3047.26Transcriptional repressor p66-alpha OS=Homo sapien... [more]
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