TCONS_00027166 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027166
Unique NameTCONS_00027166
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027166 ID=TCONS_00027166|Name=TCONS_00027166|organism=Clytia hemisphaerica|type=transcript|length=1494bp
GAAGGATCAACACACACAAAGAATAGAAGAGCCAGTAGTATTTCAACATG
AGGATTATGTTAGCCGTCGTTTTTGCCATCGCAACTTTATCAACAGTTTT
CAGTTTCGAATGTGGTTTAACAAAGAAGCAAACAGATGCAATGAACAATA
TCAACTCAAGAATCATAGGTGGTGTGGAAACTGAACTCGGTCAATGGCCT
TGGATAGCTGGTCTTACAAAGATCAATCAAACTATAAATGGACGTCCCTT
CTGCTCAGGGTCATTGATTCATCCAAAATGGATCCTAACCGCTGCTCATT
GTTTCCGCTTCCCAGAATTTCGTGAAGTCAGAGTAACTTTAGGAGATCGA
AACTACACAAAAGAGGAAGGAACCGAACAGCGTCGAAAAGTTATTCGTAT
CGTGGAGCATCCAAAATTCAGCCTTGAGACAGCCGATAACGACTATGCAT
TGGTAGAACTGGAGAGTCCTGTCGAGATCAATGATTTTGTGCGACCTATC
TGTTTACCACGAAGACCACGAGGAAGATATGCTGGTcgtaattgtaaaat
tattGGTTGGGGAATTTCGTTTGTCGGTGATTTTTCTGTTACAAGACCAG
AGGTCTTATTGGAAGGAGACGTCCGAATCTTCAATGCGTCCAAATGTTCG
AATCTTTGGAAAAGTCGAGTCAACATTACACGAAATATGGTCTGTGCCTC
CGGACCCAATCAGATTCCAGCACATTGTTTCGGTGATTCAGGAGGTCCAA
TTCAATGTCAGAATGAACGAACAGGGAAATGGTTTGTAGTTGGGAGTTCA
TCTTTTAGTACAGATTTCTGTGACGTCATACCACCTGTTTCATCGTATGT
ACCAACAAAGTTAAGATGGATTCGAAAGTTCATCGGATGGTAATCATTGA
ATTTAAAGCCCCGCTAGAGAggaaactcctggatgggaaaggAAGCTTTt
atatttcccatccaaaacgcgtggCCTGCGTCGTTTTCACACTAACACCG
GATTGAAAATAAAGTCGATTGATAGATCTAAAAAAAACCTATACTGCGgt
aaaacaaagaaagcgctAAATTTAATCTGTCGTCCCAAAACTGCcaaaat
cttaaggcttcactttttattGCTGAACGGCTGAAGATTTCTCTCTAGCC
CTTCCGGCTCTACACTCAATGGTTGGTGATGCATTTTTGTGCCCttcaat
atgttttttttttaatctaaaatCTATATGATTCGATTTGAATGTATACA
TCCCTAGAGactgaaaaaaggaaattgaaaGTTTTGCTTCGAAAGATTTA
gtcaatttgaatattttttaatcgGTTGGAtatctttgaatatttttaat
ttcgcctagcgaaagtattactatagcctttcgcggcggcggtggcggcg
gcggtgtaataaaaaaattagaaaacgaaagtacccGATATggtggacaa
actcactaaattcaatttacaaattacacgctcgtataaccacg
Run BLAST on NCBI

protein sequence of TCONS_00027166-protein

>TCONS_00027166-protein ID=TCONS_00027166-protein|Name=TCONS_00027166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MRIMLAVVFAIATLSTVFSFECGLTKKQTDAMNNINSRIIGGVETELGQW
PWIAGLTKINQTINGRPFCSGSLIHPKWILTAAHCFRFPEFREVRVTLGD
RNYTKEEGTEQRRKVIRIVEHPKFSLETADNDYALVELESPVEINDFVRP
ICLPRRPRGRYAGRNCKIIGWGISFVGDFSVTRPEVLLEGDVRIFNASKC
SNLWKSRVNITRNMVCASGPNQIPAHCFGDSGGPIQCQNERTGKWFVVGS
SSFSTDFCDVIPPVSSYVPTKLRWIRKFIGW
Run BLAST on NCBI

transcript from alignment at sc0000608:9352..14117-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027166 ID=TCONS_00027166|Name=TCONS_00027166|organism=Clytia hemisphaerica|type=transcript|length=4766bp|location=Sequence derived from alignment at sc0000608:9352..14117- (Clytia hemisphaerica)
GAAGGATCAACACACACAAAGAATAGAAGAGCCAGTAGTATTTCAACATG
AGGATTATGTTAGCCGTCGTTTTTGCCATCGCAACTTTATCAACAGTTTT
CAGTAAGTCATCTATCCATCTAGTCCTGATAAATAAAACAAGTTTAAATA
AAACAAAGTTTTAAGACCAAGTACTCATACTCTTAGGTTCCAAATAAACG
GGGAGGGGTTGGAATAAACGGGATCTTACTTAGGAAAACCCAAAAATAAG
GTAAATATAGGCTAAAATAAGAGGGGAGGTTGAAAGATTTTCGAAAAATG
AACAAGCAGGAGGGGGCATTTATTTAGAACCTAAGAGTAAGCTGTACAGC
GCATGTGCCCTGGGCGAAGCACTCAAGATAAGAAACGAATCTACCGCCCT
GAATGGCACGCTTTTTAGTGAAAAAGTTAGGAAAACGAACTTTTTTGGGT
AAAGATTTGGCAAATATGATGACCATTTTTTCCAGAAAAATGGACAAAAA
CTTTCACTTTAAAACACGGCGATCTTTGATTGGATTAATCGGATTCAAAT
TTCCTTGTTTTAGCGTAATTTCAAAAAATTAACTGAGAAAAAATGCTTTC
TTTTACTTTTATCTTTTAGAGGACAAATATAAGTACATTCTTCTAGCACT
TTCCTATCCGGAATTATCTCGATTCCGATTTAGAGGAATCTCAACCGGGA
TGAGGACGGGATAGAGGGATCTCTCGAAAACGAAAGTGCCCAATAACTGG
TGAACAGTTTGATGTATCAAAAGACTTTTTTTCCTACTTTTACATTGCTA
TAAAGAGACTATATACCAAATTTCATCTCCTTTTGAGCACTACTTAAGGA
GATACAAGGGATATTAGCCAAAATAATCCCGATTTTACAAAAGTTCCAAT
GAAAGATCACTGTGAAAGAATTTCAACATATTTTCTCAAATTTTTATAAA
GCTCCTCTGCAATGTTAGGGTCCAACCTTGAGACCATAGTAGTTTTCAAA
GCAAAGTGTCCGGGTGCAGGTGTTTCTGTAGAGACACCCCTGCCTCTATA
CCCTAGTGGGTGTTAAGCACCCAGTGGAGTGGGAATAGAAAATATAAAAT
TCACTGGGGTGCAAAATATTCTTTCAAATATTGAGTGGGGTGGTAGAAAT
CTTTTGATTTTCACTGGGGTGAGAAAAGTTTTGACAGCTTTTTACATGAC
TTTTGGTTTAAAAGCTAGTCAGAGTCTGATTCCCAGTTGGCACACAAGGG
CCACACAACGTTGTTTCAACGTTGATCTAATGTTCATAACGTCCATATAA
CGTTAGATGAACGTTGAAACAACGTTGTGTGCCAGCTGGGTTTATATATA
TGGTACTAAAGTAGAAGTTTCATTTTGATTCGATGGATCCATGACAATAT
ATGACAATACTGATCACTTGTTTGCAGGTTTCGAATGTGGTTTAACAAAG
AAGCAAACAGATGCAATGAACAATATCAACTCAAGAATCATAGGTGGTGT
GGAAACTGAACTCGGTCAATGGCCTTGGATAGTTAGTATTAATATACGAT
ATCGGCGTTCCGAATTCTCCCCGAATGATTACCAATGATGCATTGCGCGG
AAAGTCAATATCGTCCGTGAATTTATTTGCGCAATGCATCATGGGTAATC
ATTCGGGGTGAATTCGGAAAGCCGATTTCGTCTATTGAAAAACTTTTAGT
TTATCATCCATATTTTACTCGATTACTCAATTACTTGTTATATGATACAG
CCCAGCTGGCACATAACGTTGTTTCAATTTGTCTCTATTCTTGACTGATA
TATCGCTCTACCGATGGTAAAGAGCCCTTTCTTGAATCGCAAGTCAGATT
TGCAAATAACTTTGTTTCAACGTTCATCTAACGTTATATGGATGTTGTGA
ACATTAGATGGACGTCGATTCAATGTTGTGTTCCAGCTGGGAGTCAACCA
TAACTGAAACTCAAACATCTAAAATATAGAGTGTTTATAAAAGTATATGA
CTTGAAAGTTAGAGAGTCGAAATAATATTAAATTTTAGAGAGCGTCAACT
ATATATTTCTAAACTTAATATTCTTAGGCTGGTCTTACAAAGATCAATCA
AACTATAAATGGACGTCCCTTCTGCTCAGGGTCATTGATTCATCCAAAAT
GGATCCTAACCGCTGCTCATTGTTTCCGCTTCCCAGAATTTCGTGAAGTC
AGAGTAACTTTAGGTAAGAAGATATTTTTAATTTTAGTATTTTTGAGTAA
AGAGTTATTTCAAGACATTAAATCATGTTAATTTTAGTATCTATGTACGA
ACCTCTTTGACGTATTAGGGTTGGGTTCCAGTTTAATAAGATGACGTAAA
ATCTCGATATCTAAGTAACTGTCAATGCAATAATATCCAAACCCTGACTC
TTTCATGCATGTAGATCAAGGAAAGAGTTGTGAATGTCTTTGACCTTTGA
ATCTTTCTTAGCAGATTCTTCTCTAGCTTTTGACCATATCTTATCGTTTG
TCTCTTAAAACCAAAAACCATCGCAATCTTTTGACTTGATGAATACACCT
TTTCGACAGTAACCGCCAATTGCCGTGCGGGCATTTTTTTGTCCGTTTAT
CCCACTAAAACCGTCCCAGTCCTTTTTTCGCACTTATAGACAATAGAAAA
ATGTGTCAAAAAAGAATTGGATCGAGTTTAGAGGGATAATTGGCATAATT
AAATGATTAAGTGGCACGCGCTTGACCACGCGGCTACGGTCGAAAAGGTG
TATTGTTCCATCTTAAATTTTAGGAGATCGAAACTACACAAAAGAGGAAG
GAACCGAACAGCGTCGAAAAGTTATTCGTATCGTGGAGCATCCAAAATTC
AGCCTTGAGACAGCCGATAACGACTATGCATTGGTAGAACTGGAGAGTCC
TGTCGAGATCAATGATTTTGTGCGACCTATCTGTTTACCACGAAGACCAC
GAGGAAGATATGCTGGTCGTAATTGTAAAATTATTGGTTGGGGAATTTCG
TTTGTCGGTGATTTTTCTGTTACAAGACCAGAGGTGAAATAATATTTTTT
TAACCCCCTGGATATCGGATATCCAGGGGGTTAAAGATTTTTGTTCAAAA
GTGGATATCCAGGGGGTTAAATATCTACAAGGTAGCGGATATCCAGGGGG
TAAAGTGTCTTTTCAATTAAAAAAATACAATATCAAGGGGTAAGCATCTT
TATACGAGAGGATATCCAGGGGGTTGAGCATTTTTTTAAGCGTGGATATC
CAGGGGGTCTTTACTAATAAAGTGGATATCCAGGGGGTTCGATACTTCGA
AAAATCAATATCCTCAACAGTGGGGGTAAAATCTTTTTCTGGAAAAGCCC
AATCGACCCATATTTCTCTAACAAAGCTTTTAATAAATCTTTCCTCTAAT
CTCGAATTTTCCTTCATCTAACAAGCCAATTCAACGTGTGTGTTCAAGTT
ATGGACCAAGCTGGCACACAACGTTGTTTCAACGTTTATCTGACGTTCAC
AACGTCCATATAACGTTAGATGAACGTTAAAACAACGTTGTGCCTCCACT
GTACAAGGTGTGGTAGTGAAATCTCTATAAGAGCTGGTAAAACTGTTAAG
GCTTCTTTTACATATTTTTCAGCACTTCAAACCTGAATCTTTATCTTTGT
CTTATCTTTAATAAAGCAAATTGAACTATTTTGGGGTTTTTAAGGCTTTT
TTGATACTTTTTTTACAAACACGAAAGATGAGCCTTCGGGTCGCTTCCGA
CTGCGGTCGCAGACTTACTTACTTATTTTACAAACACGCTCAGTTTATTT
TGGCATTTTCGAGCCAACTCTGTTTTTCTAAAATCATTTAAAGTCTTTTT
ATAACAAAGAATCTTTTTGTTTAGGTCTTATTGGAAGGAGACGTCCGAAT
CTTCAATGCGTCCAAATGTTCGAATCTTTGGAAAAGTCGAGTCAACATTA
CACGAAATATGGTCTGTGCCTCCGGACCCAATCAGATTCCAGCACATTGT
TTCGGTGATTCAGGAGGTCCAATTCAATGTCAGAATGAACGAACAGGGAA
ATGGTTTGTAGTTGGGAGTTCATCTTTTAGTACAGATTTCTGTGACGTCA
TACCACCTGTTTCATCGTATGTACCAACAAAGTTAAGATGGATTCGAAAG
TTCATCGGATGGTAATCATTGAATTTAAAGCCCCGCTAGAGAGGAAACTC
CTGGATGGGAAAGGAAGCTTTTATATTTCCCATCCAAAACGCGTGGCCTG
CGTCGTTTTCACACTAACACCGGATTGAAAATAAAGTCGATTGATAGATC
TAAAAAAAACCTATACTGCGGTAAAACAAAGAAAGCGCTAAATTTAATCT
GTCGTCCCAAAACTGCCAAAATCTTAAGGCTTCACTTTTTATTGCTGAAC
GGCTGAAGATTTCTCTCTAGCCCTTCCGGCTCTACACTCAATGGTTGGTG
ATGCATTTTTGTGCCCTTCAATATGTTTTTTTTTTAATCTAAAATCTATA
TGATTCGATTTGAATGTATACATCCCTAGAGACTGAAAAAAGGAAATTGA
AAGTTTTGCTTCGAAAGATTTAGTCAATTTGAATATTTTTTAATCGGTTG
GATATCTTTGAATATTTTTAATTTCGCCTAGCGAAAGTATTACTATAGCC
TTTCGCGGCGGCGGTGGCGGCGGCGGTGTAATAAAAAAATTAGAAAACGA
AAGTACCCGATATGGTGGACAAACTCACTAAATTCAATTTACAAATTACA
CGCTCGTATAACCACG

Coding sequence (CDS) from alignment at sc0000608:9352..14117-

>TCONS_00027166 ID=TCONS_00027166|Name=TCONS_00027166|organism=Clytia hemisphaerica|type=CDS|length=4230bp|location=Sequence derived from alignment at sc0000608:9352..14117- (Clytia hemisphaerica)
GTCTTATTGGAAGGAGACGTCCGAATCTTCAATGCGTCCAAATGTTCGAA
TCTTTGGAAAAGTCGAGTCAACATTACACGAAATATGGTCTGTGCCTCCG
GACCCAATCAGATTCCAGCACATTGTTTCGGTGATTCAGGAGGTCCAATT
CAATGTCAGAATGAACGAACAGGGAAATGGTTTGTAGTTGGGAGTTCATC
TTTTAGTACAGATTTCTGTGACGTCATACCACCTGTTTCATCGTATGTAC
CAACAAAGTTAAGATGGATTCGAAAGTTCATCGGATGGTAAGAGATCGAA
ACTACACAAAAGAGGAAGGAACCGAACAGCGTCGAAAAGTTATTCGTATC
GTGGAGCATCCAAAATTCAGCCTTGAGACAGCCGATAACGACTATGCATT
GGTAGAACTGGAGAGTCCTGTCGAGATCAATGATTTTGTGCGACCTATCT
GTTTACCACGAAGACCACGAGGAAGATATGCTGGTCGTAATTGTAAAATT
ATTGGTTGGGGAATTTCGTTTGTCGGTGATTTTTCTGTTACAAGACCAGA
GGCTGGTCTTACAAAGATCAATCAAACTATAAATGGACGTCCCTTCTGCT
CAGGGTCATTGATTCATCCAAAATGGATCCTAACCGCTGCTCATTGTTTC
CGCTTCCCAGAATTTCGTGAAGTCAGAGTAACTTTAGGTTTCGAATGTGG
TTTAACAAAGAAGCAAACAGATGCAATGAACAATATCAACTCAAGAATCA
TAGGTGGTGTGGAAACTGAACTCGGTCAATGGCCTTGGATAATGAGGATT
ATGTTAGCCGTCGTTTTTGCCATCGCAACTTTATCAACAGTTTTCAGTCT
TATTGGAAGGAGACGTCCGAATCTTCAATGCGTCCAAATGTTCGAATCTT
TGGAAAAGTCGAGTCAACATTACACGAAATATGGTCTGTGCCTCCGGACC
CAATCAGATTCCAGCACATTGTTTCGGTGATTCAGGAGGTCCAATTCAAT
GTCAGAATGAACGAACAGGGAAATGGTTTGTAGTTGGGAGTTCATCTTTT
AGTACAGATTTCTGTGACGTCATACCACCTGTTTCATCGTATGTACCAAC
AAAGTTAAGATGGATTCGAAAGTTCATCGGATGGTAAGAGATCGAAACTA
CACAAAAGAGGAAGGAACCGAACAGCGTCGAAAAGTTATTCGTATCGTGG
AGCATCCAAAATTCAGCCTTGAGACAGCCGATAACGACTATGCATTGGTA
GAACTGGAGAGTCCTGTCGAGATCAATGATTTTGTGCGACCTATCTGTTT
ACCACGAAGACCACGAGGAAGATATGCTGGTCGTAATTGTAAAATTATTG
GTTGGGGAATTTCGTTTGTCGGTGATTTTTCTGTTACAAGACCAGAGGCT
GGTCTTACAAAGATCAATCAAACTATAAATGGACGTCCCTTCTGCTCAGG
GTCATTGATTCATCCAAAATGGATCCTAACCGCTGCTCATTGTTTCCGCT
TCCCAGAATTTCGTGAAGTCAGAGTAACTTTAGGTTTCGAATGTGGTTTA
ACAAAGAAGCAAACAGATGCAATGAACAATATCAACTCAAGAATCATAGG
TGGTGTGGAAACTGAACTCGGTCAATGGCCTTGGATAATGAGGATTATGT
TAGCCGTCGTTTTTGCCATCGCAACTTTATCAACAGTTTTCAGTCTTATT
GGAAGGAGACGTCCGAATCTTCAATGCGTCCAAATGTTCGAATCTTTGGA
AAAGTCGAGTCAACATTACACGAAATATGGTCTGTGCCTCCGGACCCAAT
CAGATTCCAGCACATTGTTTCGGTGATTCAGGAGGTCCAATTCAATGTCA
GAATGAACGAACAGGGAAATGGTTTGTAGTTGGGAGTTCATCTTTTAGTA
CAGATTTCTGTGACGTCATACCACCTGTTTCATCGTATGTACCAACAAAG
TTAAGATGGATTCGAAAGTTCATCGGATGGTAAGAGATCGAAACTACACA
AAAGAGGAAGGAACCGAACAGCGTCGAAAAGTTATTCGTATCGTGGAGCA
TCCAAAATTCAGCCTTGAGACAGCCGATAACGACTATGCATTGGTAGAAC
TGGAGAGTCCTGTCGAGATCAATGATTTTGTGCGACCTATCTGTTTACCA
CGAAGACCACGAGGAAGATATGCTGGTCGTAATTGTAAAATTATTGGTTG
GGGAATTTCGTTTGTCGGTGATTTTTCTGTTACAAGACCAGAGGCTGGTC
TTACAAAGATCAATCAAACTATAAATGGACGTCCCTTCTGCTCAGGGTCA
TTGATTCATCCAAAATGGATCCTAACCGCTGCTCATTGTTTCCGCTTCCC
AGAATTTCGTGAAGTCAGAGTAACTTTAGGTTTCGAATGTGGTTTAACAA
AGAAGCAAACAGATGCAATGAACAATATCAACTCAAGAATCATAGGTGGT
GTGGAAACTGAACTCGGTCAATGGCCTTGGATAATGAGGATTATGTTAGC
CGTCGTTTTTGCCATCGCAACTTTATCAACAGTTTTCAGTCTTATTGGAA
GGAGACGTCCGAATCTTCAATGCGTCCAAATGTTCGAATCTTTGGAAAAG
TCGAGTCAACATTACACGAAATATGGTCTGTGCCTCCGGACCCAATCAGA
TTCCAGCACATTGTTTCGGTGATTCAGGAGGTCCAATTCAATGTCAGAAT
GAACGAACAGGGAAATGGTTTGTAGTTGGGAGTTCATCTTTTAGTACAGA
TTTCTGTGACGTCATACCACCTGTTTCATCGTATGTACCAACAAAGTTAA
GATGGATTCGAAAGTTCATCGGATGGTAAGAGATCGAAACTACACAAAAG
AGGAAGGAACCGAACAGCGTCGAAAAGTTATTCGTATCGTGGAGCATCCA
AAATTCAGCCTTGAGACAGCCGATAACGACTATGCATTGGTAGAACTGGA
GAGTCCTGTCGAGATCAATGATTTTGTGCGACCTATCTGTTTACCACGAA
GACCACGAGGAAGATATGCTGGTCGTAATTGTAAAATTATTGGTTGGGGA
ATTTCGTTTGTCGGTGATTTTTCTGTTACAAGACCAGAGGCTGGTCTTAC
AAAGATCAATCAAACTATAAATGGACGTCCCTTCTGCTCAGGGTCATTGA
TTCATCCAAAATGGATCCTAACCGCTGCTCATTGTTTCCGCTTCCCAGAA
TTTCGTGAAGTCAGAGTAACTTTAGGTTTCGAATGTGGTTTAACAAAGAA
GCAAACAGATGCAATGAACAATATCAACTCAAGAATCATAGGTGGTGTGG
AAACTGAACTCGGTCAATGGCCTTGGATAATGAGGATTATGTTAGCCGTC
GTTTTTGCCATCGCAACTTTATCAACAGTTTTCAGTCTTATTGGAAGGAG
ACGTCCGAATCTTCAATGCGTCCAAATGTTCGAATCTTTGGAAAAGTCGA
GTCAACATTACACGAAATATGGTCTGTGCCTCCGGACCCAATCAGATTCC
AGCACATTGTTTCGGTGATTCAGGAGGTCCAATTCAATGTCAGAATGAAC
GAACAGGGAAATGGTTTGTAGTTGGGAGTTCATCTTTTAGTACAGATTTC
TGTGACGTCATACCACCTGTTTCATCGTATGTACCAACAAAGTTAAGATG
GATTCGAAAGTTCATCGGATGGTAAGAGATCGAAACTACACAAAAGAGGA
AGGAACCGAACAGCGTCGAAAAGTTATTCGTATCGTGGAGCATCCAAAAT
TCAGCCTTGAGACAGCCGATAACGACTATGCATTGGTAGAACTGGAGAGT
CCTGTCGAGATCAATGATTTTGTGCGACCTATCTGTTTACCACGAAGACC
ACGAGGAAGATATGCTGGTCGTAATTGTAAAATTATTGGTTGGGGAATTT
CGTTTGTCGGTGATTTTTCTGTTACAAGACCAGAGGCTGGTCTTACAAAG
ATCAATCAAACTATAAATGGACGTCCCTTCTGCTCAGGGTCATTGATTCA
TCCAAAATGGATCCTAACCGCTGCTCATTGTTTCCGCTTCCCAGAATTTC
GTGAAGTCAGAGTAACTTTAGGTTTCGAATGTGGTTTAACAAAGAAGCAA
ACAGATGCAATGAACAATATCAACTCAAGAATCATAGGTGGTGTGGAAAC
TGAACTCGGTCAATGGCCTTGGATAATGAGGATTATGTTAGCCGTCGTTT
TTGCCATCGCAACTTTATCAACAGTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015273XLOC_015273Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027166-exon-sc0000608-1575043694:14016..14117TCONS_00027166-exon-sc0000608-1575043694:14016..14117Clytia hemisphaericaexon
TCONS_00027166-exon-sc0000608-1575043694:12587..12690TCONS_00027166-exon-sc0000608-1575043694:12587..12690Clytia hemisphaericaexon
TCONS_00027166-exon-sc0000608-1575043694:11905..12040TCONS_00027166-exon-sc0000608-1575043694:11905..12040Clytia hemisphaericaexon
TCONS_00027166-exon-sc0000608-1575043694:11085..11344TCONS_00027166-exon-sc0000608-1575043694:11085..11344Clytia hemisphaericaexon
TCONS_00027166-exon-sc0000608-1575043694:9352..10243TCONS_00027166-exon-sc0000608-1575043694:9352..10243Clytia hemisphaericaexon
TCONS_00027166-exon-sc0000608-1510915933:14016..14117TCONS_00027166-exon-sc0000608-1510915933:14016..14117Clytia hemisphaericaexon
TCONS_00027166-exon-sc0000608-1510915933:12587..12690TCONS_00027166-exon-sc0000608-1510915933:12587..12690Clytia hemisphaericaexon
TCONS_00027166-exon-sc0000608-1510915933:11905..12040TCONS_00027166-exon-sc0000608-1510915933:11905..12040Clytia hemisphaericaexon
TCONS_00027166-exon-sc0000608-1510915933:11085..11344TCONS_00027166-exon-sc0000608-1510915933:11085..11344Clytia hemisphaericaexon
TCONS_00027166-exon-sc0000608-1510915933:9352..10243TCONS_00027166-exon-sc0000608-1510915933:9352..10243Clytia hemisphaericaexon
TCONS_00027166-exon-sc0000608-1491911889:14016..14117TCONS_00027166-exon-sc0000608-1491911889:14016..14117Clytia hemisphaericaexon
TCONS_00027166-exon-sc0000608-1491911889:12587..12690TCONS_00027166-exon-sc0000608-1491911889:12587..12690Clytia hemisphaericaexon
TCONS_00027166-exon-sc0000608-1491911889:11905..12040TCONS_00027166-exon-sc0000608-1491911889:11905..12040Clytia hemisphaericaexon
TCONS_00027166-exon-sc0000608-1491911889:11085..11344TCONS_00027166-exon-sc0000608-1491911889:11085..11344Clytia hemisphaericaexon
TCONS_00027166-exon-sc0000608-1491911889:9352..10243TCONS_00027166-exon-sc0000608-1491911889:9352..10243Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027166-proteinTCONS_00027166-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000608supercontigsc0000608:9352..14117 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0276091	0.0538465	0	0.061167	0.14893	0.117686	0	0.0664617	0	0	0	0.110325	0.0550859	14.7213	0.0313548	0.0168242	0	0.0637307	0	0.0307117	0.13347	0.234368	0.0633122	0.11512	0.32607	0.449742	0.0378576	0.0404027	0.122576	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR018114TRYPSIN_HIS
IPR033116TRYPSIN_SER
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00027166 vs. Swiss-Prot (Human)
Match: PRS55 (Serine protease 55 OS=Homo sapiens GN=PRSS55 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.710e-36
Identity = 81/221 (36.65%), Postives = 123/221 (55.66%), Query Frame = 3 
Query:  156 SRIIGGVETELGQWPWIAGLTKINQTINGRPFCSGSLIHPKWILTAAHCFR----FPEFREVRVTLGDRNYTKEEGTEQRRKVIRIVEHPKFSLETADNDYALVELESPVEINDFVRPICLPRRPRGRYAGRNCKIIGWGISFVGDFSVTRPEVLLEGDVRIFNASKCSNLWKSRVNITRNMVCASGPNQIPAHCFGDSGGPIQCQNERTGKWFVVGSSSF 806
            SRI GG+E E+G++PW     +++      PFC GS+++  WILTAAHC      FPE  E+ V LG  + T    + + ++V  I+ H  F     DND AL+ L SP++++D   PICLP +P G    R C + GWG +   D +  + + L++  + I +  +CS ++     +T+NM+CA   N+    C GDSGGP+ C  E   KW+ VG  S+
Sbjct:   66 SRITGGMEAEVGEFPW-----QVSIQARSEPFCGGSILNKWWILTAAHCLYSEELFPE--ELSVVLGTNDLTSP--SMEIKEVASIILHKDFKRANMDNDIALLLLASPIKLDDLKVPICLPTQP-GPATWRECWVAGWGQTNAADKNSVKTD-LMKAPMVIMDWEECSKMFP---KLTKNMLCAGYKNESYDACKGDSGGPLVCTPEPGEKWYQVGIISW 272
The following BLAST results are available for this feature:
BLAST of TCONS_00027166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRS553.710e-3636.65Serine protease 55 OS=Homo sapiens GN=PRSS55 PE=1 ... [more]
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