TCONS_00027828-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00027828-protein
Unique Name	TCONS_00027828-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	260

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00027828-protein ID=TCONS_00027828-protein|Name=TCONS_00027828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MTTATSQKKAMEVEVTDSEEEMESDGGEELFMDDDFDGDGENESYDEEDD
SEQKHGHEAMGDVISKILQKKVTTDTSGLVLSKSQSTKKKRTARQEEIKA
KKAKTEELLDQREMNHVLPIEVNDVPKEARLRRIGTKGVVMLFNAVSTHQ
KSKAEKMKTAKTEGDKVRVEKSMKKSTFMDMLKNDKKSSKKVKQEIKVKE
EEEDDANKSSWNVLKNDFMLGSTLKHWDKDDEEGGSKKKKKNIKETLDVE
DSSDEADHSD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_015724	XLOC_015724	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00027828	TCONS_00027828	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012459	Rrp15

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 182..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..260
IPR012459	Ribosomal RNA-processing protein 15	PFAM	PF07890	Rrp15p	coord: 62..183 e-value: 5.6E-21 score: 75.2

Blast

[Close]

BLAST of TCONS_00027828-protein vs. Swiss-Prot (Human)
Match: RRP15 (RRP15-like protein OS=Homo sapiens GN=RRP15 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.029e-20
Identity = 74/234 (31.62%), Postives = 121/234 (51.71%), Query Frame = 0

Query:   11 MEVEVTDSEEEMESDGGEE--LFMDDDF-----DGDGENESYDEEDDSEQKHG-HEAMGDVISKILQKKVTTDTSGLVLSKSQSTKKKRTARQEEIKAKKAKTEELLDQREMNHVLPIEVNDVPKEARLRRIGTKGVVMLFNAVSTHQKSKAEKMKTAKTEGDK-VRVEKSMKKSTFMDMLK------NDKKSSKKVKQEIKVKEEEEDDANKSSWNVLKNDFMLGSTLKHWDK 229
            +E E TD+ +   S G E+   + DDD      +GD E    + E+D E   G +    D ++K+L KK       +++   +  K+K   +QE ++  K + ++ L+   M  V P  V D   E  L+RI T+GVV LFNAV  HQK+  EK+K A +   K  ++  ++ K  F+ +L+      N+  SS+K   + K K+ E        W +L++DFM+G+++K WDK
Sbjct:   35 LEDEATDTSDSEGSCGSEKDHFYSDDDAIEADSEGDAEPCDKENENDGESSVGTNMGWADAMAKVLNKKTPESKPTILVKNKKLEKEKEKLKQERLEKIKQR-DKRLEWEMMCRVKPDVVQDKETERNLQRIATRGVVQLFNAVQKHQKNVDEKVKEAGSSMRKRAKLISTVSKKDFISVLRGMDGSTNETASSRK---KPKAKQTEVKSEEGPGWTILRDDFMMGASMKDWDK 264

The following BLAST results are available for this feature:

BLAST of TCONS_00027828-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00027828-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RRP15	4.029e-20	31.62	RRP15-like protein OS=Homo sapiens GN=RRP15 PE=1 S...	[more]

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TCONS_00027828-protein (polypeptide) - C. hemisphaerica