TCONS_00027573-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027573-protein
Unique NameTCONS_00027573-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length644

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027573-protein ID=TCONS_00027573-protein|Name=TCONS_00027573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=644bp
SKDTPKEQRKIIFIQLEKQTNESLGLVIVGGEDSKRLTPGIYIKHIKPNS
VCERDGRLNEGDRIISVNGISLEESTHEQAAEILKRAGNKLDLVVSKTPN
NVSLLEKSGLSPSMDNSQVIRYKNWDSVLGENNEKLKKKLSGIDLIDDDT
ESEEQFSERAIDVPATGSRDDQLEVQQTSYQQPSSEYDDPAQLERTMDDI
AHDLAMDAIQERIQDVEDCKRGSTTASSKSQSQKQSTSDKNEDRFHVNSS
FPAHSSAQQSPPQGEEITPRANVVVNDVEISQGDDDFSFMTESDLDEEKP
SSNLKRFGAFQALDRLDADEPSSSCAHEEDDERSLVNRTLDQTLDEVEVE
IEKINGSFGFSVQGGKESNLPLGSIYVKQVYPNGAAARTKRIRDGDRLLA
VNGTSLENIKHQEAVTILKEAPNKSVITFDRGIELPDEPQKEPEQPVNEE
IERLRKDEKVFEVNVEKRENGLGLSLAGGKDSDVCYGEKIMIRKLFPGYA
LHECGRFLVGDVILAINDQVMEGLTYQEAIAVIRTSPKMVTIIAKRPQRD
EIPSELFETSRPVSPEKLLKDSKLLQISGRSASREGHRLAKELLQSLHDV
DETSIDIPLSSIIAHSQFDDIEGGFSDEDVGDENFPEDDDDDVS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015549XLOC_015549Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027573TCONS_00027573Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 22..99
e-value: 3.0E-21
score: 86.6
coord: 470..548
e-value: 1.3E-13
score: 61.3
coord: 356..433
e-value: 4.7E-18
score: 76.0
IPR001478PDZ domainPFAMPF00595PDZcoord: 349..423
e-value: 4.5E-16
score: 58.9
coord: 463..542
e-value: 1.1E-8
score: 35.2
coord: 14..95
e-value: 3.6E-18
score: 65.6
IPR001478PDZ domainPROSITEPS50106PDZcoord: 13..99
score: 23.159
IPR001478PDZ domainPROSITEPS50106PDZcoord: 462..548
score: 18.637
IPR001478PDZ domainPROSITEPS50106PDZcoord: 348..433
score: 21.25
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 456..551
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 7..100
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 341..433
NoneNo IPR availableGENE3D2.30.42.10coord: 1..108
e-value: 1.6E-23
score: 82.3
NoneNo IPR availableGENE3D2.30.42.10coord: 315..434
e-value: 1.7E-23
score: 82.5
coord: 435..551
e-value: 2.3E-18
score: 65.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 219..266
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 621..644
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 460..543
e-value: 1.29833E-12
score: 63.3546
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 346..428
e-value: 3.16211E-19
score: 82.2294
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 14..95
e-value: 4.37324E-23
score: 93.015

Blast
[Close]
BLAST of TCONS_00027573-protein vs. Swiss-Prot (Human)
Match: FRPD2 (FERM and PDZ domain-containing protein 2 OS=Homo sapiens GN=FRMPD2 PE=1 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 1.785e-28
Identity = 76/225 (33.78%), Postives = 114/225 (50.67%), Query Frame = 0 
Query:  349 VEIEKINGSFGFSVQGGKESNLPLGSIYVKQVYPNGAAARTKRIRDGDRLLAVNGTSLENIKHQEAVTILKEAPNKSVITFDRGIELPDEPQKEPEQPVNEEIERLR-----------------KDEKVFEVNVEKRENGLGLSLAGGKDSDVCYGEK---IMIRKLFPGYALHECGRFLVGDVILAINDQVMEGLTYQEAIAVIRTSPKMVTIIAKRPQRDEIP 553
            VE+ K +G+ GFSV GG  +++P G IYVK + P G AA+  +I  GDRLL V+G  L  + H++AV  L      + +  +R   +P   Q+ P    +   ER                    D   FEV ++K  NGLG S     + + C   K   + I++LFPG    E G    GD+ILA+N +  EGL +QE + ++R +P+ VT++  RP    +P
Sbjct:  951 VELVKEDGTLGFSVTGGINTSVPYGGIYVKSIVPGGPAAKEGQILQGDRLLQVDGVILCGLTHKQAVQCLTGPGQVARLVLER--RVPRSTQQCPSANDSMGDERTAVSLVTALPGRPSSCVSVTDGPKFEVKLKKNANGLGFSFV-QMEKESCSHLKSDLVRIKRLFPGQPAEENGAIAAGDIILAVNGRSTEGLIFQEVLHLLRGAPQEVTLLLCRPPPGALP 1172
The following BLAST results are available for this feature:
BLAST of TCONS_00027573-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FRPD21.785e-2833.78FERM and PDZ domain-containing protein 2 OS=Homo s... [more]
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