TCONS_00026702-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00026702-protein
Unique Name	TCONS_00026702-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	689

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00026702-protein ID=TCONS_00026702-protein|Name=TCONS_00026702-protein|organism=Clytia hemisphaerica|type=polypeptide|length=689bp
MEKRSRIVVKLLCYAAIWGIVYGAPKPTKQTTVNNVCNKLKINSIFRRKT
LIEGKLNHQLQNVINNKELDHVEKTHRVRIINIVHREINDSVALLYRAVH
SLGSLLRGEHKTLHTLKEISKKRLEHLQTSMLSVEEDYRVLLEEEQNSEK
HKAQQQAAGSKNVVKKFFNDLIGDISEAADKLETDLDDDAFEMEIHSKKH
KKFDVETVVKVTGEQTSGGEETNEGVVMLIDADSNHFVLSKPKDTTTTHI
DHNLLKEIIFLTTLSFLFVIIGNLLNMPSNFACVVAGVMLGPSGGNYIKN
IVQIETIGEFGVFFMLFSVGLEFSLDKLKKVLRKSLTGVIGIFTILVVMG
LFWGSMLGFLPRQSIFVTLCLAFSSTPLITKLLQGHTATRDASSDSFVNL
LLAMLVIEDALLGILMATLPLIAGHSSSKSHSLAHVPLGSLHNRIHGAFG
GPGEALFFTLFELCVGLTGIFLIAYVLSKYVAARFFRSLNFSGSHESFVL
GIMSAVFFMLLITEYFGVSMELGCFISGTIFSTMGEQTTKKVSQTVEPFR
DFFASLFFASIGFHVFPTFVISELAIFIPITTMVILAKLFVASGVLHFVL
PKEDNTKWVIAAGLAQMSEFSFLLASRARRFGLIGREVFLIILSVTTLSL
FFSPFLWKMTHSNFRKHLRLVVQRFVNRFMSKLPLVKLS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_015016	XLOC_015016	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00026702	TCONS_00026702	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006153	Cation/H_exchanger

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006812	cation transport
GO:0055085	transmembrane transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0015299	solute:proton antiporter activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006812	cation transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015299	solute:proton antiporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.91.10		coord: 496..596 e-value: 7.8E-4 score: 18.8
IPR006153	Cation/H+ exchanger	PFAM	PF00999	Na_H_Exchanger	coord: 259..658 e-value: 1.1E-51 score: 175.8

Blast

[Close]

BLAST of TCONS_00026702-protein vs. Swiss-Prot (Human)
Match: TMCO3 (Transmembrane and coiled-coil domain-containing protein 3 OS=Homo sapiens GN=TMCO3 PE=1 SV=1)

HSP 1 Score: 421.009 bits (1081), Expect = 2.623e-138
Identity = 244/648 (37.65%), Postives = 387/648 (59.72%), Query Frame = 0

Query:   23 GAPKPTKQTTVNNVCNKLKINSIFRRKTLIEGKLNHQLQNVINNKELDHVEKTHRVRIINIVHREINDSVALLYRAVHSLGSLLRGEHKTLHTLKEISKKRLEHLQTSMLSVEEDYRVLLEEEQNSEKHKAQQ-QAAGSKNVVKKFFNDLIGDISEAADKLETDLDDDAFEMEIHSKKHKKFDVETVVKVTGEQTSGGE-------ETNEGVVMLIDADSNHFVLSKPKDTTTTHIDHNLLKEIIFLTTLSFLFVIIGNLLNMPSNFACVVAGVMLGPSGGNYIKNIVQIETIGEFGVFFMLFSVGLEFSLDKLKKVLRKSLTGVIGIFTILVVMGLFWGSMLGFLPRQSIFVTLCLAFSSTPLITKLLQGHTATRDASSD-SFVNLLLAMLVIEDALLGILMATLPLIAGHSSSKSHSLAHVPLGSLHNRIHGAFGGPGEALFFTLFELCVGLTGIFLIAYVLSKYVAARFFRSLNFS--GSHESFVLGIMSAVFFMLLITEYFGVSMELGCFISGTIFSTMGEQTTKKVSQTVEPFRDFFASLFFASIGFHVFPTFVISELAIFIPITTMVILAKLFVASGVLHFVLPKEDN-TKWVIAAGLAQMSEFSFLLASRARRFGLIGREVFLIILSVTTLSLFFSPFLWK 658
            G      +  V + C KL  + + R+K  +  KL   +  V  +  L   EK  +V    I  +E+N+S   +++AV+ L   L+G++K +  +KE S++RLE L+ + +  E +Y  LL     +EKH+ +  +    +N      ++++ D+ +AAD+LE ++++ AF+    +K  K  + E V++V  E+ +  +       E + G+ MLID+ +N ++L+KP+D+T    DH+ +K+I+ +  LS     +   + +P+ F  ++ GV+LGPSG N IK+IVQ+ET+GEFGVFF LF VGLEFS +KL+KV + SL G   +  +++  GL WG +L   P QS+F++ CL+ SSTPL+++ L G +A  D   D  +  +LL MLV +D  LG+ MA +P +    +S S S+    L     RI    G           ++   L  +FL+  V+ KY+   ++R L+    G+ E  +LGI + +F ML +TE   VSMELGCF++G + S+ G   T++++ ++EP RDF A +FFASIG HVFPTFV  EL + + +T  V++ K  +A+ VL  +LP+     KW+++AGLAQ+SEFSF+L SRARR G+I REV+L+ILSVTTLSL  +P LW+
Sbjct:   40 GVAAMQSRQWVRDSCRKL--SGLLRQKNAVLNKLKTAIGAVEKDVGLSDEEKLFQVHTFEIFQKELNESENSVFQAVYGLQRALQGDYKDVVNMKESSRQRLEALREAAIKEETEYMELL----AAEKHQVEALKNMQHQNQSLSMLDEILEDVRKAADRLEEEIEEHAFD---DNKSVKGVNFEAVLRVEEEEANSKQNITKREVEDDLGLSMLIDSQNNQYILTKPRDSTIPRADHHFIKDIVTIGMLSLPCGWLCTAIGLPTMFGYIICGVLLGPSGLNSIKSIVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWKISLQGPCYMTLLMIAFGLLWGHLLRIKPTQSVFISTCLSLSSTPLVSRFLMG-SARGDKEGDIDYSTVLLGMLVTQDVQLGLFMAVMPTLIQAGASASSSIVVEVL-----RILVLIG-----------QILFSLAAVFLLCLVIKKYLIGPYYRKLHMESKGNKEILILGISAFIFLMLTVTELLDVSMELGCFLAGALVSSQGPVVTEEIATSIEPIRDFLAIVFFASIGLHVFPTFVAYELTVLVFLTLSVVVMKFLLAALVLSLILPRSSQYIKWIVSAGLAQVSEFSFVLGSRARRAGVISREVYLLILSVTTLSLLLAPVLWR 661

The following BLAST results are available for this feature:

BLAST of TCONS_00026702-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00026702-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TMCO3	2.623e-138	37.65	Transmembrane and coiled-coil domain-containing pr...	[more]

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TCONS_00026702-protein (polypeptide) - C. hemisphaerica