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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027103 ID=TCONS_00027103|Name=TCONS_00027103|organism=Clytia hemisphaerica|type=transcript|length=2917bpRun BLAST on NCBI transcript from alignment at sc0000606:90623..109496- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027103 ID=TCONS_00027103|Name=TCONS_00027103|organism=Clytia hemisphaerica|type=transcript|length=18874bp|location=Sequence derived from alignment at sc0000606:90623..109496- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00027103 vs. Swiss-Prot (Human)
Match: S6A13 (Sodium- and chloride-dependent GABA transporter 2 OS=Homo sapiens GN=SLC6A13 PE=1 SV=3) HSP 1 Score: 379.793 bits (974), Expect = 8.605e-119 Identity = 223/599 (37.23%), Postives = 318/599 (53.09%), Query Frame = 3
Query: 195 WGNKVEFLLASVGLAVGVGNVWRFPYLCQKNGGGAFLIPYFTMMVLQGFPLFIMEFAMGQRMKQSAVRCWNNVHPVFFGVGISCMLVSFAMCSYYIVVITWCLYYFFVSFTSDLPWQRQYCGKYKEYTALQNNISSYIQSLRDSNATMGFIYNETLRTDSEIKNFPDCCVVDPPQYFWYHNALQTSPLLERADHMNWKIFGCLAAGWFVVYLCVLKGVKSSGKAAYFTATFPYVLLFILFIRGVTLEGAGDGIKEFFRPKMSEIWKFQAWMDAATQIFYSLSIGFGALIAFSSYMPRKNNCVNDALIVVLINCGTSLFAGIVTFSFLGYRQHKTGIEIEKIG-TGPGLAFITYCEAFLLMEVSPLWSILFFMMLVLLGIDSEFGTLEGAVAPLYDL-GWVTMRKEYFMAIIGGVFVV---LEMIFCLGNGYYLFQIFDDYSVP-VPLLIIALFQVVALGWVYGTDRISNDIEYMTGKRPHIFWRICWKYISPLILIVVFFGYIVSMISETP-TYRAYVGCEQDPFNPEISEGSEHWWKKFKYPWWAQLFAAILVLISVLPIPYYFIKNWP--KGGFTKIKEALSNPAIYYPDPSWKEPE 1964
W NK+EF+L+ G +G+GNVWRFPYLC KNGGGAF IPY + G P+F++E A+GQ Q V W + P+F G+G + ++ + YYI+V+ W L+Y F SFT DLPW G Y E+ + + + +N + L SE P V++ FW L+ S ++ + W++ CL W + Y C+ KGVKS+GK YFTATFPY++L +L IRGVTL GA GI+ + P ++ +W Q WMDA TQIF+S +I G L A SY NNC D + + +N GTS AG FS LG+ + G+ I ++ +GPGLAFI Y A +++ SPLW+ FF M+VLLG+DS+F +E V L D+ V +K +I GV VV + +I G Y+FQ+FD Y+ + LL +A+F+ + + WVYG R ++IE M G RP + CW +++P + F + S+I TP TY KK+ YPWW +L L S++ IP + + KG F + L PA P + P
Sbjct: 35 WNNKMEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFFIPYLVFLFTCGIPVFLLETALGQYTSQGGVTAWRKICPIFEGIGYASQMIVILLNVYYIIVLAWALFYLFSSFTIDLPWG----GCYHEWN------TEHCMEFQKTNGS--------LNGTSENATSP---VIE----FWERRVLKISDGIQHLGALRWELALCLLLAWVICYFCIWKGVKSTGKVVYFTATFPYLMLVVLLIRGVTLPGAAQGIQFYLYPNLTRLWDPQVWMDAGTQIFFSFAICLGCLTALGSYNKYHNNCYRDCIALCFLNSGTSFVAGFAIFSILGFMSQEQGVPISEVAESGPGLAFIAYPRAVVMLPFSPLWACCFFFMVVLLGLDSQFVCVESLVTALVDMYPHVFRKKNRREVLILGVSVVSFLVGLIMLTEGGMYVFQLFDYYAASGMCLLFVAIFESLCVAWVYGAKRFYDNIEDMIGYRPWPLIKYCWLFLTPAVCTATF---LFSLIKYTPLTYN----------------------KKYTYPWWGDALGWLLALSSMVCIPAWSLYRLGTLKGPFRERIRQLMCPAEDLPQRNPAGPS 583 The following BLAST results are available for this feature:
BLAST of TCONS_00027103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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