TCONS_00027100 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027100
Unique NameTCONS_00027100
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length655

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027100 ID=TCONS_00027100|Name=TCONS_00027100|organism=Clytia hemisphaerica|type=transcript|length=655bp
AATCAAATCTCCAGATCATTAATTGGAATCGCATTGGCAAGTAAAGAAaT
ATTTAGAAAGTGAAATTAAATCCAACCACCTTCAACATGCCACAGTTCGG
AGGAGCACCAAAATGCGGTCGATGCGGAAAATCAGTTTACCAACAAGAAG
AGAAGATTGCTGCAGGAGGCTCATGGCATAAACAGGGTTGTTTTACTTGC
AAAGATTGCAATAAATCGTTGGATTCCAATACTATCGCTGAGAAGAAAGG
AGAGAACGGCGCTGTTGGAGAAATCTATTGCAAATCATGTTATGGTAAAC
ACTACGGACCAAAAGGTTACGGATTTGGTGGTGGCTCCGGTACTCTTTCC
GTAAgtggaaaataagaaaatcttccGGACGTCCCAGCTATTCTCCAAGA
TTGTAAATAGGATACAAAATAGAGGTATATGGCTTACTTCAACAAACTGG
TACGTGGAACAAACGTCCAAATGGCGCCCATCTAACGCCCACGACCATCT
TTTTCATATTAGTTGGGTATAAAGTGCAATATATCAGATATTTGATTGAA
TTCCCCTGTAAATATCtttgttatatttttatgaCAATATTTAATTGAAT
TTTATATAGTTATACATTCAATTTATAATCCAAGAAAAATTTTGGACTAA
AAGAT
Run BLAST on NCBI

transcript from alignment at sc0000606:85052..86766-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027100 ID=TCONS_00027100|Name=TCONS_00027100|organism=Clytia hemisphaerica|type=transcript|length=1715bp|location=Sequence derived from alignment at sc0000606:85052..86766- (Clytia hemisphaerica)
AATCAAATCTCCAGATCATTAATTGGAATCGCATTGGCAAGTAAAGAAGT
AAGTCTTTGGTTTGTTAATGGTAAAAGATAACAGATATCTGACGGCACTG
AGTTTAAAGCTCAAAGGGTATAGAGTGGAACCATCAGCCGTTCACAAGCA
AGAAAGAATGAATCCATAAGACTTGCGCCACCTTTAGAACGACGTATTGA
ACCTAGCGCTTTCTTTGTTTCCACGCTGCCTTCTTTTCGAAAACTGGCGA
TATATTTTACTTTGAATCTAGATTTTGCATGAAAACTACCTGGGTCACGT
GTTTCAGATTGGAAATAAGTGCCTTCATTTCCCATCCAGGAGTTCTTTAA
TGAAACTCTGCGATGAAATTAGTTTATGATCTTTGATTACCCCCTGTCTC
ATTGGCACGCGGAACCAAATAAAGGAATTTCATGTGATGAGAAAGAAAAA
TATTATGCCAATCTTGACACAGGACCTTTTTGCCTCTTACTTGATTGTAT
TAGCATGGTTAGTTTCTTTACTTTAGCTTCATTATTTCTTTCTTTCAGAT
ATTTAGAAAGTGAAATTAAATCCAACCACCTTCAACATGCCACAGGTAAA
TCACGTGTTTTTATTGCATCTAAACCGAAATAGAGAAACCAATGTTTACT
GTGGAGCAATCCAGGGAGAAAGAGTGGTGTCCTTCCCTACCTTCAGCTAT
ATGGCTATTGAAAGAGGAGCTTTTATGTTGCCTCAGTTTTTGGTCGCAAG
TCTTAATAACTTCAAGTCGTGTCAGAAAAATCATAAAATCAAATACGTCA
AAACATGTTCAGGATGGACATTTTTCTTGTATTGGAAGTTTATCAGTTTG
CTAAAACCTTTCATATATTTTGATTGTTTTCTACCAGTTCGGAGGAGCAC
CAAAATGCGGTCGATGCGGAAAATCAGTTTACCAACAAGAAGAGAAGATT
GCTGCAGGAGGCTCATGGCATAAACAGGGTTGTTTTACTTGCAAAGATTG
CAATAAATCGTTGGATTCCAATACTATCGCTGAGAAGAAAGGAGGTAGGC
TAATCTCTTTATGATGCTAGGATTGACAGGTATTTTTTACAGAGGCAATG
ACTTTAATAGACATCAATAACATTCCAACTGTGGTGTTTCGATTTGCCTT
ATTCTATTCTTCCAACTCAGTATTGCTCAGGTGAGAATCTAACTCATAGA
AATCCAATATTATCAATACCATCAGAGTGTACACCTCATTTTTTTTCAGC
CATACGTCCTTTTCAAATTGACGAATGATCAAATTGAATTACTGTATATA
CTTTCGTTACAGAGAACGGCGCTGTTGGAGAAATCTATTGCAAATCATGT
TATGGTAAACACTACGGACCAAAAGGTTACGGATTTGGTGGTGGCTCCGG
TACTCTTTCCGTAAGTGGAAAATAAGAAAATCTTCCGGACGTCCCAGCTA
TTCTCCAAGATTGTAAATAGGATACAAAATAGAGGTATATGGCTTACTTC
AACAAACTGGTACGTGGAACAAACGTCCAAATGGCGCCCATCTAACGCCC
ACGACCATCTTTTTCATATTAGTTGGGTATAAAGTGCAATATATCAGATA
TTTGATTGAATTCCCCTGTAAATATCTTTGTTATATTTTTATGACAATAT
TTAATTGAATTTTATATAGTTATACATTCAATTTATAATCCAAGAAAAAT
TTTGGACTAAAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015229XLOC_015229Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027100-exon-sc0000606-1575043694:86719..86766TCONS_00027100-exon-sc0000606-1575043694:86719..86766Clytia hemisphaericaexon
TCONS_00027100-exon-sc0000606-1575043694:86172..86218TCONS_00027100-exon-sc0000606-1575043694:86172..86218Clytia hemisphaericaexon
TCONS_00027100-exon-sc0000606-1575043694:85723..85879TCONS_00027100-exon-sc0000606-1575043694:85723..85879Clytia hemisphaericaexon
TCONS_00027100-exon-sc0000606-1575043694:85052..85454TCONS_00027100-exon-sc0000606-1575043694:85052..85454Clytia hemisphaericaexon
TCONS_00027100-exon-sc0000606-1510915933:86719..86766TCONS_00027100-exon-sc0000606-1510915933:86719..86766Clytia hemisphaericaexon
TCONS_00027100-exon-sc0000606-1510915933:86172..86218TCONS_00027100-exon-sc0000606-1510915933:86172..86218Clytia hemisphaericaexon
TCONS_00027100-exon-sc0000606-1510915933:85723..85879TCONS_00027100-exon-sc0000606-1510915933:85723..85879Clytia hemisphaericaexon
TCONS_00027100-exon-sc0000606-1510915933:85052..85454TCONS_00027100-exon-sc0000606-1510915933:85052..85454Clytia hemisphaericaexon
TCONS_00027100-exon-sc0000606-1491911889:86719..86766TCONS_00027100-exon-sc0000606-1491911889:86719..86766Clytia hemisphaericaexon
TCONS_00027100-exon-sc0000606-1491911889:86172..86218TCONS_00027100-exon-sc0000606-1491911889:86172..86218Clytia hemisphaericaexon
TCONS_00027100-exon-sc0000606-1491911889:85723..85879TCONS_00027100-exon-sc0000606-1491911889:85723..85879Clytia hemisphaericaexon
TCONS_00027100-exon-sc0000606-1491911889:85052..85454TCONS_00027100-exon-sc0000606-1491911889:85052..85454Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000606supercontigsc0000606:85052..86766 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.016754	0.171479	0	0.0881161	0	0	0.02154	0.211653	0	0	0.0805913	0	27.059	19.8696	0.145021	0.0204189	37.1406	37.2016	33.8982	41.8385	83.2563	70.7452	43.0522	57.0901	23.2667	40.8839	9.86327	16.3083	16.9122	28.9909
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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