TCONS_00027055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027055
Unique NameTCONS_00027055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length629

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027055 ID=TCONS_00027055|Name=TCONS_00027055|organism=Clytia hemisphaerica|type=transcript|length=629bp
GTTATCTTCAGCAGCTGCAGCTCCGTCAGCCAGGAGAAGAATTGAGAGAG
ATAACAATCGAAATCCAAATACTGTTGAACGGGCTGCTGCCAACATTCAC
CAAGTTAGAATGGAGGGGCatgaaaatcgaaattcaaatgtTGTTGATGG
GGCTGCTGCTAACATTCACCAAGTCAGAACGAACGAACTGCTGAATGAGA
TGTTAGCAACTCAAAGGCGAGCCAACATTCTCCTGGGCCAATTGATTGCA
AAGGTTTCAGAGCAACCATTACCTAATGCAAACCCAAACCTAAATCAAAC
ACAAACGGCTCCTTTAGATGAAAATGACTTTgtTCTGGCAGTTGGCTCCA
ACTTGTTAGATGTGCCGAGACATAATACTCCTACAATATAAGCCATTGCC
TTGGCTACGGCGATGTTTACGACAGAAGAACTTGAAAATGGCATGGTCTC
GCCTAAATCAGGCAAAAGGAAATCGAAGACTGCATTAGATCCTAATCAAG
TCAAGAAAATAAAGCCTAAATTGAATTATTTCATCCACCATGGGTTGAca
aataacttattttcaaggttttttgctgttttataCAAATAAGTCATGTT
AAGCCTGGGAGCTCCTCAAAAAGTTATgc
Run BLAST on NCBI

protein sequence of TCONS_00027055-protein

>TCONS_00027055-protein ID=TCONS_00027055-protein|Name=TCONS_00027055-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
LSSAAAAPSARRRIERDNNRNPNTVERAAANIHQVRMEGHENRNSNVVDG
AAANIHQVRTNELLNEMLATQRRANILLGQLIAKVSEQPLPNANPNLNQT
QTAPLDENDFVLAVGSNLLDVPRHNTPTI
Run BLAST on NCBI

transcript from alignment at sc0000605:112893..115717+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027055 ID=TCONS_00027055|Name=TCONS_00027055|organism=Clytia hemisphaerica|type=transcript|length=2825bp|location=Sequence derived from alignment at sc0000605:112893..115717+ (Clytia hemisphaerica)
GTTATCTTCAGCAGCTGCAGCTCCGTCAGCCAGGAGAAGAATTGTGAGTT
AAATTTGACAGCCATCAGTTACTCATAAGGTAGAAAACATtaggaaaagt
ttaaaaatgtatgtttgaaatgttaaaatttaTACCCTTAAGGTAATGCT
TGAGTTCAGAGTATGGTCTGTCAAATTTTAATATAGGCTACAATTAgact
atttagagcaaaataaagggccttctctttgacagctgaaaatattctta
gaaatTAATAAATGGGGGTTCTAATAACATCCGGgtggggttggaaaatt
ttgaaaaattaacaagcaggcGGGTTTAACCCCTGTATTATGAGAAAAAA
GTATGATGTTTAGTGTTGTTTACAGTGTCCCACTTTAGGTTTCATTAGTC
TACATAGTGCTACATAATATACAGCACCAGGCTTTttggccttactcttg
gtctataggcactgctatataCAGAGAATTTAaatgaaagaatatttaaa
acaccgctgattggcttaggtttcgaaactctctattctTTCATTAAAAC
CTTAGTGCGCATGCAATGTATCCGGAGAATTTTAATagtcaaaacaagag
cagtgctcatatcccgaagagtaggagttttatgCTCGAATCGAAGGAAG
ACGAAGCCTAAGGTTTCGTATCTTCTgatagattttgaattttgggctga
aatttttatgtgcCCTTCTCAAAAATTAATCCCCTATGGTGTAAACTCAA
CACTTTtgaagccaattttttttcaatttcaatttccatttagaactttt
ataaaaatcttaCAGCCTTAACTTATCCCACTCAGAATtatctttattta
cttatttacttttgattatatcatttttcattcaatagCAATGAACCAAA
ATATGCGGACTgtcatttttttgagaaagactCGAATAAATATCATAAAG
ATTTTAAGGTCTTCTTTATGTGTTTAGGAGAGAGATAACAATCGAAATCC
AAATACTGTTGAACGGGCTGCTGCCAACATTCACCAAGTTAGAATGGTAA
GGAAGCCTATTCCCAATGGAATCTTCCAAATAGTAAGGATTGAAGGCCCT
TCTTTTAACTGTTTCTTTAATATTTATCTTTATCTATTGTATTATTTAAC
TGCTACTGATGATGGTACTTAGATAAGGTCGGATCGTCTAAGaataaatt
ttagtttttacaaaaagCACAAAATCAAGATTGTGGTGGGATCAACCTAT
ATGAATTTTATCTATTACAATAATTATTTGCCTTTGAAGCCTTGATTGCT
ATTTTTGCATTCCTTGATAtctcaatttaaaaaaacttttctcgtGTTTT
TTTGTGACTAACTAACTTTTGATATGAATGAGATGTTGGCAACTCGAAGA
GAAATTTGTGAGCTTCTTAATAAATATCATTGAGATGGTAAAGGTCTTCT
TTATATGTGTTTAGGAGGGGCatgaaaatcgaaattcaaatgtTGTTGAT
GGGGCTGCTGCTAACATTCACCAAGTCAGAACGGTAAGGAAGCCTAATCA
AATGGCTGTACTATTTGTTTCATCACGATGAATGCCCTTCATTATCTGTT
ATCTATTGCAGTATTTATTCAGATGTGAGACcttgattgttttatttttt
gcattCCACAATATTTCTACTTAACCTTTCCCacttttttgtgacttttt
tcaGAACGAACTGCTGAATGAGATGTTAGCAACTCAAAGGCGAGCCAACA
TTCTCCTGGGCCAATTGATTGCAAAGGTAAATTTACCTAGATAAATTTAA
AACAAGCATTATTTGTctgtttttttgtaaattttgcggCAAGGTAGAAC
ATTGGTGTCACCATTCTTTTTTAGGTTTCAGAGCAACCATTACCTAATGC
AAACCCAAACCTAAATCAAACACAAACGGCTCCTTTAGATGAAAATGACT
TTGTAAGTATCATTTcaacttctttatttttgacttcATATCCACTGAGT
TTTGAATATTTAAAGGAAAACTTTTTGGATTAAGTTcctgtcaaattttg
ttttcatcaGAAGAAGAAACTGCTAAAATTCTAAAGCTCTGTGAAAACTG
ActtgataattttgaaaaaactcttGAGAAGGAAAGAAAGACTTAATTTG
TTTTGAGTGGGAGAAaattataattgtaaaattgacattttttatatttg
aataatttttgagAGAGACATGTATCCTTTATTTACTCTCTACTTACTTT
ATGTATTTTAACCATTGTTATTCTAAACCAAATTACCGAATTAcgaaatc
aaaataaacacttttttcgaaCATGTATATAATTTTTTCATTCACAACAG
CAACGCAATTTTAatatgcaactttaagcttacacaaaggtttctagata
ACTAAAATGTTCCTTTTTGTTgctttcattactttttgctttatttccaA
TGTCTGAGTGTCGCCGTGCTAGATTACATTTAAGTACCGTAGTACGGTTG
TCTAAAGcaataaaattgtatttttaggtTCTGGCAGTTGGCTCCAACTT
GTTAGATGTGCCGAGACATAATACTCCTACAATATAAGCCATTGCCTTGG
CTACGGCGATGTTTACGACAGAAGAACTTGAAAATGGCATGGTCTCGCCT
AAATCAGGCAAAAGGAAATCGAAGACTGCATTAGATCCTAATCAAGTCAA
GAAAATAAAGCCTAAATTGAATTATTTCATCCACCATGGGTTGAcaaata
acttattttcaaggttttttgctgttttataCAAATAAGTCATGTTAAGC
CTGGGAGCTCCTCAAAAAGTTATgc

Coding sequence (CDS) from alignment at sc0000605:112893..115717+

>TCONS_00027055 ID=TCONS_00027055|Name=TCONS_00027055|organism=Clytia hemisphaerica|type=CDS|length=2340bp|location=Sequence derived from alignment at sc0000605:112893..115717+ (Clytia hemisphaerica)
TTATCTTCAGCAGCTGCAGCTCCGTCAGCCAGGAGAAGAATTGAGAGAGA
TAACAATCGAAATCCAAATACTGTTGAACGGGCTGCTGCCAACATTCACC
AAGTTAGAATGGAGGGGCatgaaaatcgaaattcaaatgtTGTTGATGGG
GCTGCTGCTAACATTCACCAAGTCAGAACGAACGAACTGCTGAATGAGAT
GTTAGCAACTCAAAGGCGAGCCAACATTCTCCTGGGCCAATTGATTGCAA
AGGTTTCAGAGCAACCATTACCTAATGCAAACCCAAACCTAAATCAAACA
CAAACGGCTCCTTTAGATGAAAATGACTTTgtTCTGGCAGTTGGCTCCAA
CTTGTTAGATGTGCCGAGACATAATACTCCTACAATATAATTATCTTCAG
CAGCTGCAGCTCCGTCAGCCAGGAGAAGAATTGAGAGAGATAACAATCGA
AATCCAAATACTGTTGAACGGGCTGCTGCCAACATTCACCAAGTTAGAAT
GGAGGGGCatgaaaatcgaaattcaaatgtTGTTGATGGGGCTGCTGCTA
ACATTCACCAAGTCAGAACGAACGAACTGCTGAATGAGATGTTAGCAACT
CAAAGGCGAGCCAACATTCTCCTGGGCCAATTGATTGCAAAGGTTTCAGA
GCAACCATTACCTAATGCAAACCCAAACCTAAATCAAACACAAACGGCTC
CTTTAGATGAAAATGACTTTgtTCTGGCAGTTGGCTCCAACTTGTTAGAT
GTGCCGAGACATAATACTCCTACAATATAATTATCTTCAGCAGCTGCAGC
TCCGTCAGCCAGGAGAAGAATTGAGAGAGATAACAATCGAAATCCAAATA
CTGTTGAACGGGCTGCTGCCAACATTCACCAAGTTAGAATGGAGGGGCat
gaaaatcgaaattcaaatgtTGTTGATGGGGCTGCTGCTAACATTCACCA
AGTCAGAACGAACGAACTGCTGAATGAGATGTTAGCAACTCAAAGGCGAG
CCAACATTCTCCTGGGCCAATTGATTGCAAAGGTTTCAGAGCAACCATTA
CCTAATGCAAACCCAAACCTAAATCAAACACAAACGGCTCCTTTAGATGA
AAATGACTTTgtTCTGGCAGTTGGCTCCAACTTGTTAGATGTGCCGAGAC
ATAATACTCCTACAATATAATTATCTTCAGCAGCTGCAGCTCCGTCAGCC
AGGAGAAGAATTGAGAGAGATAACAATCGAAATCCAAATACTGTTGAACG
GGCTGCTGCCAACATTCACCAAGTTAGAATGGAGGGGCatgaaaatcgaa
attcaaatgtTGTTGATGGGGCTGCTGCTAACATTCACCAAGTCAGAACG
AACGAACTGCTGAATGAGATGTTAGCAACTCAAAGGCGAGCCAACATTCT
CCTGGGCCAATTGATTGCAAAGGTTTCAGAGCAACCATTACCTAATGCAA
ACCCAAACCTAAATCAAACACAAACGGCTCCTTTAGATGAAAATGACTTT
gtTCTGGCAGTTGGCTCCAACTTGTTAGATGTGCCGAGACATAATACTCC
TACAATATAATTATCTTCAGCAGCTGCAGCTCCGTCAGCCAGGAGAAGAA
TTGAGAGAGATAACAATCGAAATCCAAATACTGTTGAACGGGCTGCTGCC
AACATTCACCAAGTTAGAATGGAGGGGCatgaaaatcgaaattcaaatgt
TGTTGATGGGGCTGCTGCTAACATTCACCAAGTCAGAACGAACGAACTGC
TGAATGAGATGTTAGCAACTCAAAGGCGAGCCAACATTCTCCTGGGCCAA
TTGATTGCAAAGGTTTCAGAGCAACCATTACCTAATGCAAACCCAAACCT
AAATCAAACACAAACGGCTCCTTTAGATGAAAATGACTTTgtTCTGGCAG
TTGGCTCCAACTTGTTAGATGTGCCGAGACATAATACTCCTACAATATAA
TTATCTTCAGCAGCTGCAGCTCCGTCAGCCAGGAGAAGAATTGAGAGAGA
TAACAATCGAAATCCAAATACTGTTGAACGGGCTGCTGCCAACATTCACC
AAGTTAGAATGGAGGGGCatgaaaatcgaaattcaaatgtTGTTGATGGG
GCTGCTGCTAACATTCACCAAGTCAGAACGAACGAACTGCTGAATGAGAT
GTTAGCAACTCAAAGGCGAGCCAACATTCTCCTGGGCCAATTGATTGCAA
AGGTTTCAGAGCAACCATTACCTAATGCAAACCCAAACCTAAATCAAACA
CAAACGGCTCCTTTAGATGAAAATGACTTTgtTCTGGCAGTTGGCTCCAA
CTTGTTAGATGTGCCGAGACATAATACTCCTACAATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015202XLOC_015202Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027055-proteinTCONS_00027055-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027055-exon-sc0000605-1491911889:112893..112935TCONS_00027055-exon-sc0000605-1491911889:112893..112935Clytia hemisphaericaexon
TCONS_00027055-exon-sc0000605-1510915933:112893..112935TCONS_00027055-exon-sc0000605-1510915933:112893..112935Clytia hemisphaericaexon
TCONS_00027055-exon-sc0000605-1575043694:112893..112935TCONS_00027055-exon-sc0000605-1575043694:112893..112935Clytia hemisphaericaexon
TCONS_00027055-exon-sc0000605-1491911889:113870..113938TCONS_00027055-exon-sc0000605-1491911889:113870..113938Clytia hemisphaericaexon
TCONS_00027055-exon-sc0000605-1510915933:113870..113938TCONS_00027055-exon-sc0000605-1510915933:113870..113938Clytia hemisphaericaexon
TCONS_00027055-exon-sc0000605-1575043694:113870..113938TCONS_00027055-exon-sc0000605-1575043694:113870..113938Clytia hemisphaericaexon
TCONS_00027055-exon-sc0000605-1491911889:114357..114425TCONS_00027055-exon-sc0000605-1491911889:114357..114425Clytia hemisphaericaexon
TCONS_00027055-exon-sc0000605-1510915933:114357..114425TCONS_00027055-exon-sc0000605-1510915933:114357..114425Clytia hemisphaericaexon
TCONS_00027055-exon-sc0000605-1575043694:114357..114425TCONS_00027055-exon-sc0000605-1575043694:114357..114425Clytia hemisphaericaexon
TCONS_00027055-exon-sc0000605-1491911889:114597..114668TCONS_00027055-exon-sc0000605-1491911889:114597..114668Clytia hemisphaericaexon
TCONS_00027055-exon-sc0000605-1510915933:114597..114668TCONS_00027055-exon-sc0000605-1510915933:114597..114668Clytia hemisphaericaexon
TCONS_00027055-exon-sc0000605-1575043694:114597..114668TCONS_00027055-exon-sc0000605-1575043694:114597..114668Clytia hemisphaericaexon
TCONS_00027055-exon-sc0000605-1491911889:114767..114844TCONS_00027055-exon-sc0000605-1491911889:114767..114844Clytia hemisphaericaexon
TCONS_00027055-exon-sc0000605-1510915933:114767..114844TCONS_00027055-exon-sc0000605-1510915933:114767..114844Clytia hemisphaericaexon
TCONS_00027055-exon-sc0000605-1575043694:114767..114844TCONS_00027055-exon-sc0000605-1575043694:114767..114844Clytia hemisphaericaexon
TCONS_00027055-exon-sc0000605-1491911889:115420..115717TCONS_00027055-exon-sc0000605-1491911889:115420..115717Clytia hemisphaericaexon
TCONS_00027055-exon-sc0000605-1510915933:115420..115717TCONS_00027055-exon-sc0000605-1510915933:115420..115717Clytia hemisphaericaexon
TCONS_00027055-exon-sc0000605-1575043694:115420..115717TCONS_00027055-exon-sc0000605-1575043694:115420..115717Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000605supercontigsc0000605:112893..115717 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.72827	1.14222	0.58063	0.516806	5.17297	2.75274	2.45253	3.08154	5.58859	3.77719	5.13476	4.09151	4.17071	4.09644	6.03235	5.05342	11.4488	8.5246	3.87407	3.19587	6.80603	6.3328	4.16583	3.9892	0.200029	0	1.90439	1.49122	2.04623	1.40977
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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