TCONS_00027061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027061
Unique NameTCONS_00027061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length780

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027061 ID=TCONS_00027061|Name=TCONS_00027061|organism=Clytia hemisphaerica|type=transcript|length=780bp
ATTCttgattaaattgattttgtatttccTTGGAGTAAAACTATACCAAT
TTGTATAAACTCCAGTATGAGTAGGTTTGTAGTAGGTACTTGTTAAGAAT
TTCTCATCTTCTTTGACAATCTTTGTATCAAGGAAGGGGAAACTATCCTC
TGATGTCGATTCTTCTTCTTTGGTGAACACAATGTTTTTATGGCGAGTGt
tcaaataatcaaaaaatgGTGTAACGTGTGATTGATTTTTGAACAATAGA
AAACTATCATCAACATAACGTCGATAAAAGGATGGTTTTTCAATATCACC
GGGACAAATCTCGAAAGCCTTTTCCTCGAAATTTCTCATGAATATATTAG
CTAATACAGGTGCTAATGGTGAACCCATGGCAACCCCGTCAATTTGATCG
TAACATTTACCATTGAAAATGAAGTTGGTTTCTTTAGTTGCCATATCCAA
AAGGGACTTGAATTCGTTTCTTGATAAACCACTGACAGTAGTTGCGTTTT
CATAAAGGTAATCCAAAGCTATGGTTATGGTTGCATCAAGAGGAATAGAC
GTAAACAAACTGGAGACATCAAAGCTTGCGATATGACAAGATGTAGAATT
CATTCCTTGGAGTTCATTGACAAAAGCGAACGTATTTCGTATTGTGTATT
GATTCGTAGCATATGGTGAAAGAATCTTAGCAATTTCGGAAGATAGTTTA
TAATTGAAAGAGTTAACCGACGAGCAGATTGGTCGTAATGGATGGTTGTT
TTTATGAACTTTAGCAAGACCATATAATCT
Run BLAST on NCBI

protein sequence of TCONS_00027061-protein

>TCONS_00027061-protein ID=TCONS_00027061-protein|Name=TCONS_00027061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
RLYGLAKVHKNNHPLRPICSSVNSFNYKLSSEIAKILSPYATNQYTIRNT
FAFVNELQGMNSTSCHIASFDVSSLFTSIPLDATITIALDYLYENATTVS
GLSRNEFKSLLDMATKETNFIFNGKCYDQIDGVAMGSPLAPVLANIFMRN
FEEKAFEICPGDIEKPSFYRRYVDDSFLLFKNQSHVTPFFDYLNTRHKNI
VFTKEEESTSEDSFPFLDTKIVKEDEKFLTSTYYKPTHTGVYTNWYSFTP
RKYKINLIKN
Run BLAST on NCBI

transcript from alignment at sc0000605:69246..70025

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027061 ID=TCONS_00027061|Name=TCONS_00027061|organism=Clytia hemisphaerica|type=transcript|length=780bp|location=Sequence derived from alignment at sc0000605:69246..70025 (Clytia hemisphaerica)
AGATTATATGGTCTTGCTAAAGTTCATAAAAACAACCATCCATTACGACC
AATCTGCTCGTCGGTTAACTCTTTCAATTATAAACTATCTTCCGAAATTG
CTAAGATTCTTTCACCATATGCTACGAATCAATACACAATACGAAATACG
TTCGCTTTTGTCAATGAACTCCAAGGAATGAATTCTACATCTTGTCATAT
CGCAAGCTTTGATGTCTCCAGTTTGTTTACGTCTATTCCTCTTGATGCAA
CCATAACCATAGCTTTGGATTACCTTTATGAAAACGCAACTACTGTCAGT
GGTTTATCAAGAAACGAATTCAAGTCCCTTTTGGATATGGCAACTAAAGA
AACCAACTTCATTTTCAATGGTAAATGTTACGATCAAATTGACGGGGTTG
CCATGGGTTCACCATTAGCACCTGTATTAGCTAATATATTCATGAGAAAT
TTCGAGGAAAAGGCTTTCGAGATTTGTCCCGGTGATATTGAAAAACCATC
CTTTTATCGACGTTATGTTGATGATAGTTTTCTATTGTTCAAAAATCAAT
CACACGTTACACcattttttgattatttgaaCACTCGCCATAAAAACATT
GTGTTCACCAAAGAAGAAGAATCGACATCAGAGGATAGTTTCCCCTTCCT
TGATACAAAGATTGTCAAAGAAGATGAGAAATTCTTAACAAGTACCTACT
ACAAACCTACTCATACTGGAGTTTATACAAATTGGTATAGTTTTACTCCA
AggaaatacaaaatcaatttaatcaaGAAT

Coding sequence (CDS) from alignment at sc0000605:69246..70025

>TCONS_00027061 ID=TCONS_00027061|Name=TCONS_00027061|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at sc0000605:69246..70025 (Clytia hemisphaerica)
AGATTATATGGTCTTGCTAAAGTTCATAAAAACAACCATCCATTACGACC
AATCTGCTCGTCGGTTAACTCTTTCAATTATAAACTATCTTCCGAAATTG
CTAAGATTCTTTCACCATATGCTACGAATCAATACACAATACGAAATACG
TTCGCTTTTGTCAATGAACTCCAAGGAATGAATTCTACATCTTGTCATAT
CGCAAGCTTTGATGTCTCCAGTTTGTTTACGTCTATTCCTCTTGATGCAA
CCATAACCATAGCTTTGGATTACCTTTATGAAAACGCAACTACTGTCAGT
GGTTTATCAAGAAACGAATTCAAGTCCCTTTTGGATATGGCAACTAAAGA
AACCAACTTCATTTTCAATGGTAAATGTTACGATCAAATTGACGGGGTTG
CCATGGGTTCACCATTAGCACCTGTATTAGCTAATATATTCATGAGAAAT
TTCGAGGAAAAGGCTTTCGAGATTTGTCCCGGTGATATTGAAAAACCATC
CTTTTATCGACGTTATGTTGATGATAGTTTTCTATTGTTCAAAAATCAAT
CACACGTTACACcattttttgattatttgaaCACTCGCCATAAAAACATT
GTGTTCACCAAAGAAGAAGAATCGACATCAGAGGATAGTTTCCCCTTCCT
TGATACAAAGATTGTCAAAGAAGATGAGAAATTCTTAACAAGTACCTACT
ACAAACCTACTCATACTGGAGTTTATACAAATTGGTATAGTTTTACTCCA
AggaaatacaaaatcaatttaatcaaGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015208XLOC_015208Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027061-exon-sc0000605-1491911889:69246..70025TCONS_00027061-exon-sc0000605-1491911889:69246..70025Clytia hemisphaericaexon
TCONS_00027061-exon-sc0000605-1510915933:69246..70025TCONS_00027061-exon-sc0000605-1510915933:69246..70025Clytia hemisphaericaexon
TCONS_00027061-exon-sc0000605-1575043694:69246..70025TCONS_00027061-exon-sc0000605-1575043694:69246..70025Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027061-proteinTCONS_00027061-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000605supercontigsc0000605:69246..70025 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.434929	0.363535	0.562798	0.0688263	1.67579	1.12559	0.958576	1.79481	1.09952	2.07532	0.629487	0.8276	0.454547	0.600793	0.0705619	0.227171	0.373142	0.430266	0.0660484	0.0691149	0.300367	0.263715	0.14248	0	1.06735	1.25026	0	0.181847	0.27585	0.210785
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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