TCONS_00026989 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026989
Unique NameTCONS_00026989
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length573

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026989 ID=TCONS_00026989|Name=TCONS_00026989|organism=Clytia hemisphaerica|type=transcript|length=573bp
GGGGCATATTAAATTCCTTTTTATGCAAGGCTTGCTTGTGGTTCTGAAAA
TCTGCCTGATGAGCGATAAATTTTAGCTTGTTAATTTTGAGCtagaaatg
atagctaaaaatatttttcatcacAATAAAGCTTGAATACCTATCTTCCT
GATAGACCTTTCTACAGTATTACAATATCATTCtttataattaaaaactc
cagtatCAAAACAATAACCAACTGATGCAttataaataaaaactttgCAG
TGCACTCCCTCCAAAAATGGGAAACCACCCAATTCTGATAATGTATGAAT
GGCAATTTTGGCTCCTGTGGGGAAGAGCAGTTTAtgtttggaactggaaa
ctattgaaGGTTGGTAGAGTATCATGTCAATGAATGTTTGTGTCAAATTT
GAGTTTTCTTCTTTGCAGTATTCAGCAAACAAAGGTAGTCagaccaaaat
taaaatcagcTTGCTTCTATTCTAGAAATTAAAACTCACATGGTCAACCa
gaaaatattcatttttacatttttttttacattcttgattttcacttttc
aggagaaataattttgaaagtgA
Run BLAST on NCBI

transcript from alignment at sc0000597:123140..123712

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026989 ID=TCONS_00026989|Name=TCONS_00026989|organism=Clytia hemisphaerica|type=transcript|length=573bp|location=Sequence derived from alignment at sc0000597:123140..123712 (Clytia hemisphaerica)
Tcactttcaaaattatttctcctgaaaagtgaaaatcaagaatgtaaaaa
aaaatgtaaaaatgaatattttctGGTTGACCATGTGAGTTTTAATTTCT
AGAATAGAAGCAAgctgattttaattttggtctGACTACCTTTGTTTGCT
GAATACTGCAAAGAAGAAAACTCAAATTTGACACAAACATTCATTGACAT
GATACTCTACCAACCttcaatagtttccagttccaaacaTAAACTGCTCT
TCCCCACAGGAGCCAAAATTGCCATTCATACATTATCAGAATTGGGTGGT
TTCCCATTTTTGGAGGGAGTGCACTGcaaagtttttatttataaTGCATC
AGTTGGTTATTGTTTTGatactggagtttttaattataaaGAATGATATT
GTAATACTGTAGAAAGGTCTATCAGGAAGATAGGTATTCAAGCTTTATTg
tgatgaaaaatatttttagctatcatttctaGCTCAAAATTAACAAGCTA
AAATTTATCGCTCATCAGGCAGATTTTCAGAACCACAAGCAAGCCTTGCA
TAAAAAGGAATTTAATATGCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015153XLOC_015153Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026989-exon-sc0000597-1491911889:123140..123712TCONS_00026989-exon-sc0000597-1491911889:123140..123712Clytia hemisphaericaexon
TCONS_00026989-exon-sc0000597-1510915933:123140..123712TCONS_00026989-exon-sc0000597-1510915933:123140..123712Clytia hemisphaericaexon
TCONS_00026989-exon-sc0000597-1575043694:123140..123712TCONS_00026989-exon-sc0000597-1575043694:123140..123712Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000597supercontigsc0000597:123140..123712 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.194933	0	0.882851	0.215933	0.525755	0.415459	0.626542	0	0.246399	0.40694	0	0.584208	0.194465	0.403908	0	0.415753	0.585341	0.0749944	0.310827	0.216838	0.376944	0.27579	0.111753	0.203199	0.732517	0.56036	0.534583	0.14263	0.86544	0.220437
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026989 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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