TCONS_00022565-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022565-protein
Unique NameTCONS_00022565-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022565-protein ID=TCONS_00022565-protein|Name=TCONS_00022565-protein|organism=Clytia hemisphaerica|type=polypeptide|length=402bp
MSHRKFRAPRHGSLGFLPRKRSKRQNGKIKCFPKDDQTQPCHLTGFVGFK
AGMTHIVREVDRAGSKTHKKEVVEAVTILETPPIVIVGIVGYVETPRGMR
QLTTVWAEHLSEECRRRFYKNWYTSKRKAFTKSSKKWSDENGKKSIERDL
EKMKKYCKVIRVLVHTQQKLIRLKQKKAHIMEIQVNGGDIAAKVDWAKEH
LEKTVSVASVFGQDEMLDCIGITKGHGFKGVTYRWGTKKLPRKTHKGLRK
VACIGAWHPARVAYSVPRAGQCGYHHRVERNKKVYRVGRGVHTKDNKVVK
NNAATEYDLTEKTITPMGGFPHYGEVNEDFLMIKGCVMGPKKRVITLRKT
LLPQTSRKALEKISLKFIDTSSKFGHGRFQHDQEKKNFMGLLKKDKQNAV
EA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012653XLOC_012653Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022565TCONS_00022565Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000597Ribosomal_L3
IPR019926Ribosomal_L3_CS
IPR009000Transl_B-barrel
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.1430.10coord: 87..204
e-value: 7.2E-54
score: 180.7
NoneNo IPR availableGENE3D4.10.960.10coord: 3..86
e-value: 5.7E-17
score: 61.7
NoneNo IPR availableGENE3D2.40.30.10coord: 226..375
e-value: 3.3E-46
score: 156.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
IPR000597Ribosomal protein L3PFAMPF00297Ribosomal_L3coord: 1..375
e-value: 1.5E-182
score: 606.5
IPR019926Ribosomal protein L3, conserved sitePROSITEPS00474RIBOSOMAL_L3coord: 211..234
IPR009000Translation protein, beta-barrel domainSUPERFAMILY50447Translation proteinscoord: 4..375

Blast
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BLAST of TCONS_00022565-protein vs. Swiss-Prot (Human)
Match: RL3 (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 617.076 bits (1590), Expect = 0.000e+0
Identity = 286/396 (72.22%), Postives = 341/396 (86.11%), Query Frame = 0 
Query:    1 MSHRKFRAPRHGSLGFLPRKRSKRQNGKIKCFPKDDQTQPCHLTGFVGFKAGMTHIVREVDRAGSKTHKKEVVEAVTILETPPIVIVGIVGYVETPRGMRQLTTVWAEHLSEECRRRFYKNWYTSKRKAFTKSSKKWSDENGKKSIERDLEKMKKYCKVIRVLVHTQQKLIRLKQKKAHIMEIQVNGGDIAAKVDWAKEHLEKTVSVASVFGQDEMLDCIGITKGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPARVAYSVPRAGQCGYHHRVERNKKVYRVGRGVHTKDNKVVKNNAATEYDLTEKTITPMGGFPHYGEVNEDFLMIKGCVMGPKKRVITLRKTLLPQTSRKALEKISLKFIDTSSKFGHGRFQHDQEKKNFMGLLKKDK 396
            MSHRKF APRHGSLGFLPRKRS R  GK+K FPKDD ++P HLT F+G+KAGMTHIVREVDR GSK +KKEVVEAVTI+ETPP+V+VGIVGYVETPRG+R   TV+AEH+S+EC+RRFYKNW+ SK+KAFTK  KKW DE+GKK +E+D   MKKYC+VIRV+ HTQ +L+ L+QKKAH+MEIQVNGG +A K+DWA+E LE+ V V  VFGQDEM+D IG+TKG G+KGVT RW TKKLPRKTH+GLRKVACIGAWHPARVA+SV RAGQ GYHHR E NKK+Y++G+G   KD K++KNNA+T+YDL++K+I P+GGF HYGEV  DF+M+KGCV+G KKRV+TLRK+LL QT R+ALEKI LKFIDT+SKFGHGRFQ  +EKK FMG LKKD+
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDR 396
The following BLAST results are available for this feature:
BLAST of TCONS_00022565-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL30.000e+072.2260S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
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