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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026893 ID=TCONS_00026893|Name=TCONS_00026893|organism=Clytia hemisphaerica|type=transcript|length=2352bpRun BLAST on NCBI protein sequence of TCONS_00026893-protein >TCONS_00026893-protein ID=TCONS_00026893-protein|Name=TCONS_00026893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=551bp MSSLIMHGRREGQVKNGGLASELPRIGLMAQGINPNEVAVFQPKDWQRIQRun BLAST on NCBI transcript from alignment at sc0000596:4924..21070+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026893 ID=TCONS_00026893|Name=TCONS_00026893|organism=Clytia hemisphaerica|type=transcript|length=16147bp|location=Sequence derived from alignment at sc0000596:4924..21070+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000596:4924..21070+ >TCONS_00026893 ID=TCONS_00026893|Name=TCONS_00026893|organism=Clytia hemisphaerica|type=CDS|length=24840bp|location=Sequence derived from alignment at sc0000596:4924..21070+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00026893 vs. Swiss-Prot (Human)
Match: CC173 (Coiled-coil domain-containing protein 173 OS=Homo sapiens GN=CCDC173 PE=2 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 5.862e-21 Identity = 67/171 (39.18%), Postives = 107/171 (62.57%), Query Frame = 2
Query: 161 LIMHGRREGQVKNG-----GLASELPRIGLMAQGINPNEVAVFQPKDWQRIQNNLARYNEASEKAEQKRRDRENLHAASKELVKHWENTIEGQRLKKXXXXXXXXXXXXXXXXXXXXXXXXXQAQKRKEAIERAKQQQYYETDRVKGFHGALLLTEVLKERDAQIAFKNSR 658
L+ GRR G+ K ++ + L+ ++ +V + +W+RIQ++L R + +R+ ++ +H S+E+VKHW NT G + +KL+A+K R+E+ E ER+ +D+EE + KRK+AIE AKQ Q+Y+T+RVK FH LLL+ V+KERDAQI F+ S+
Sbjct: 8 LVRFGRRCGRAKESTEIRNSEEDQVLYLPLLPSKVDLQQVTIIPHDEWKRIQDSLDRLTREAACLRAERKAKKEMHLRSQEVVKHWTNTYAGMKEQKLEAKKKRDEEIEAERQILDLEEEIYKQGKRKKAIENAKQYQFYQTERVKNFHSGLLLSRVMKERDAQIEFRKSK 178 The following BLAST results are available for this feature:
BLAST of TCONS_00026893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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