TCONS_00020428-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020428-protein
Unique Name	TCONS_00020428-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	312

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020428-protein ID=TCONS_00020428-protein|Name=TCONS_00020428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MTEPMTYEQYAKDYPGNHFLVLGPTNPVRKIAFKISTSKLFDSFILLAIV
VNCIMMAMSAPLPLNDTNELNNSIEALEVYLLAIFIGEACVKMLTQGFIL
HAGSYIRNGWNLLDFTVVVTGILGLPSVGMGENAGPMKVIKAARVLRPLK
LVSGVPSLQIVMSAIIKSMASLLQISLLIGFVIVIFAIIFLSFLPGKFHY
TCFKNATEPFPQEYQIEAGRLCSEGSSGRPCPEGSICKRYWDGPNFGVTN
FDNIFSACLTVFTCITCEGWTDTMYWTMDVMDYDGYYMFSIYWLLNVIGA
QFMLNLVCGVLS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011474	XLOC_011474	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020428	TCONS_00020428	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005821	Ion_trans_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006811	ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.70		coord: 37..312 e-value: 1.3E-48 score: 164.8
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 38..197 coord: 247..298
IPR005821	Ion transport domain	PFAM	PF00520	Ion_trans	coord: 39..311 e-value: 3.5E-57 score: 193.3

Blast

[Close]

BLAST of TCONS_00020428-protein vs. Swiss-Prot (Human)
Match: CAC1A (Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS=Homo sapiens GN=CACNA1A PE=1 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 8.018e-77
Identity = 137/287 (47.74%), Postives = 185/287 (64.46%), Query Frame = 0

Query:   26 NPVRKIAFKISTSKLFDSFILLAIVVNCIMMAMSAPLPLNDTNELNNSIEALEVYLLAIFIGEACVKMLTQGFILHAGSYIRNGWNLLDFTVVVTGILGLPSVGMGENAGPMKVIKAARVLRPLKLVSGVPSLQIVMSAIIKSMASLLQISLLIGFVIVIFAIIFLSFLPGKFHYTCFKNATEPFPQEYQIEAGRLCSEGSSGRPCPEGSICKRYWDGPNFGVTNFDNIFSACLTVFTCITCEGWTDTMYWTMDVMDYDGYYMFSIYWLLNVIGAQFMLNLVCGVLS 312
            N VRK A KI+    F+  IL  I+ NCI++A+   LP +D   ++  ++  E Y + IF  EA +K++  GF  H GSY+RNGWN++DF VV+TGIL   +VG   +   ++ ++A RVLRPLKLVSG+PSLQ+V+ +I+K+M  LLQI LL+ F I+IFAII L F  GKFH TCF+  T+    + Q E+   C      R CP G+ C+ YW+GPN G+T FDNI  A LTVF CIT EGWTD +Y + D       +++ I   L +IG+ FMLNLV GVLS
Sbjct:   85 NVVRKYAKKITEWPPFEYMILATIIANCIVLALEQHLPDDDKTPMSERLDDTEPYFIGIFCFEAGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGILA--TVGTEFD---LRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMIPLLQIGLLLFFAILIFAIIGLEFYMGKFHTTCFEEGTD----DIQGESPAPCGTEEPARTCPNGTKCQPYWEGPNNGITQFDNILFAVLTVFQCITMEGWTDLLYNSNDASGNTWNWLYFI--PLIIIGSFFMLNLVLGVLS 360

HSP 2 Score: 116.701 bits (291), Expect = 7.018e-29
Identity = 76/268 (28.36%), Postives = 128/268 (47.76%), Query Frame = 0

Query:   15 PGNHFLVLGPTNPVRKIAFKISTSKLFDSFILLAIVVNCIMMAMSAPLPLNDTNELNNSIEALEVYLLAIFIGEACVKMLTQGFILHAGSYIRNGWNLLDFTVVVTGILGLPSVG--MGENAGPMKVIKAARVLRPLKLVSGVPSLQIVMSAIIKSMASLLQISLLIGFVIVIFAIIFLSFLPGKFHYTCFKNATEPFPQEYQIEAGRLCSEGSSGRPCPEGSICKRYWDGPNFGVTNFDNIFSACLTVFTCITCEGWTDTMYWTMDV 280
            P +   +L  TNP+R++   I   + F+  IL+ I ++ I +A   P+  N     NN +   +     +F  E  +KM+  G +LH G+Y R+ WN+LDF VV   ++     G   G++   +K ++  RVLRPLK +  +P L+ V   ++ S+ ++  I ++    + IFA++ +    GKF + C   + E    E       L  E +      E     R W    F   ++DN+  A LT+FT  T EGW   +  ++D 
Sbjct: 1220 PYSSMFILSTTNPLRRLCHYILNLRYFEMCILMVIAMSSIALAAEDPVQPNAPR--NNVLRYFDYVFTGVFTFEMVIKMIDLGLVLHQGAYFRDLWNILDFIVVSGALVAFAFTGNSKGKDINTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVFNILIVYMLFMFIFAVVAVQLFKGKF-FHCTDESKE---FEKDCRGKYLLYEKN------EVKARDREWKKYEF---HYDNVLWALLTLFTVSTGEGWPQVLKHSVDA 1472

The following BLAST results are available for this feature:

BLAST of TCONS_00020428-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020428-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CAC1A	8.018e-77	47.74	Voltage-dependent P/Q-type calcium channel subunit...	[more]

You are here

TCONS_00020428-protein (polypeptide) - C. hemisphaerica