TCONS_00020366-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020366-protein
Unique NameTCONS_00020366-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020366-protein ID=TCONS_00020366-protein|Name=TCONS_00020366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=450bp
MDYPDPEDFLDQDDYDLYENRFQDEFEMMEEFENENTTKKKNDKVDFTVE
NKTTKTANELDRSLLKGSLKRTSTFLESDDDELMYSDEEDKKKESSNGAS
IKENNSPMKEKCTKKLKFDEPSPPSETITPQSQASKELSELRQRLQGNIE
DDADDFDEQQYNNTRQRVFRRPLLGYDMVNVTNTEGDRVFLKLSPDTEHE
KSKVTFRDTDGRLNLLSVPFEDLLSEVNEKRHQNLIQRRAINSSDRRVPD
IRGTKDLALWVDKYSPHKYTELLSDDGTNRLLLKWLKLWDNVVFHEGKAI
NTKRFTNNNNNNKFQNKDGGFKKQDGGKFKRRDFTKSTFASRQAILEEEL
VHDKKGRPKMKIALLCGNPGLGKTTLAHVISKHAGYNVIEMNASDDRSTE
IFRNRIESSVQMKATVTSHKKPNCLIIDEIDGAPAAAINILTELCKTTDN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011442XLOC_011442Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020366TCONS_00020366Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003959ATPase_AAA_core
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..35
NoneNo IPR availableGENE3D3.40.50.300coord: 257..450
e-value: 6.5E-23
score: 80.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 305..327
NoneNo IPR availableCDDcd00009AAAcoord: 357..447
e-value: 9.10592E-14
score: 67.1711
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 364..433
e-value: 1.8E-11
score: 44.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 346..441
coord: 234..289

Blast
[Close]
BLAST of TCONS_00020366-protein vs. Swiss-Prot (Human)
Match: CTF18 (Chromosome transmission fidelity protein 18 homolog OS=Homo sapiens GN=CHTF18 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 2.901e-56
Identity = 139/344 (40.41%), Postives = 187/344 (54.36%), Query Frame = 0 
Query:  128 ITPQSQASKELSELRQRLQGNIEDDADDFDEQQYNNTRQRVFRRPLLGYDMVNVTNTEGDRVFLKL-----SPDTEHEKSKVTFRDTDGRLNLLSVPFEDLLSEVNEKRHQNLIQR-------------------RAINSSDRRVPDIRGTKDLALWVDKYSPHKYTELLSDDGTNRLLLKWLKLWDNVVF-HEGKAINTKRFTNNNNNNKFQNKDGGFKKQDGGKFKRRDFTKSTFASRQAILEEELVH--DKKGRPKMKIALLCGNPGLGKTTLAHVISKHAGYNVIEMNASDDRSTEIFRNRIESSVQMKATVTSHKKPNCLIIDEIDGAPAAAINILTEL 444
            ITP   + ++L+EL     G  E  AD    +     R  V RRP +  D V+VT+TEG R +L L     +P  +     V +R   G+L+LL V    L  +V+ +R + L+Q                    + + + +    D +      LWVD+++P  YTELLSDD TNR LLKWLKLWD VVF HE  +   +        +K     G +K                  S + +LEE L    D   RPK K+ALLCG PGLGKTTLAHVI++HAGY+V+EMNASDDRS E+FR RIE++ QM++ + +  KPNCL+IDEIDGAP AAIN+L  +
Sbjct:  130 ITPPP-SPEDLAELWG--HGVSEAAADVGLTRASPAARNPVLRRPPILEDYVHVTSTEGVRAYLVLRADPMAPGVQGSLLHVPWRG-GGQLDLLGVSLASLKKQVDGERRERLLQEAQKLSDTLHSLRSGEEEAAQPLGAPEEEPTDGQDASSHCLWVDEFAPRHYTELLSDDFTNRCLLKWLKLWDLVVFGHERPSRKPRPSVEPARVSKEATAPGKWK------------------SHEQVLEEMLEAGLDPSQRPKQKVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESVLGAGGKPNCLVIDEIDGAPVAAINVLLSI 451
The following BLAST results are available for this feature:
BLAST of TCONS_00020366-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTF182.901e-5640.41Chromosome transmission fidelity protein 18 homolo... [more]
back to top